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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:210420..214585 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00620.1 vs.
Match: CBJ25619.1 (PObg1, plastid Obg/CgtA-like GTPase 1 [Ectocarpus siliculosus]) HSP 1 Score: 547.7 bits (1410), Expect = 4.800e-152 Identity = 285/455 (62.64%), Postives = 337/455 (74.07%), Query Frame = 0
Query: 184 DELEEEEEEEGGDGRPKNDPEWQFFDTAKVYVKGGDGGDGCVAFRREKFVDMGGPNGGSGGAGGSVFFRCDEGLNTLAGLRSKVHWKALGGGRGQGKSRTGPSAQDVIVDVPPGTIVRTLDGTLAGQLIEHNQRVLVARGGRGGRGNEQFKSERNNAPKLMEKGEPGAERWLQVELKLVADVGFVGVPNAGKSTLLAAVSNARPKIADYPFTTIVPNLGVWDASETVKGEWVEKGMVLADIPGLLEGAHQGIGLGLAFLRHVQRCRVLVHVVNGDSPDPVGDFVAINQELALFNPKLAEKPQVVVLNKIDLIE-PERQAHLEKLLKEAIPHTRFMSISAIKKTNTAELMHRVWKMLKVIKDEEEDLLNGEVPIQLDEQSFR-MSYQIITDPKYPGQFRVQGKQIEKICAMTNWDYYEAVERFQRILEATGIAKTLKKRGAKEGDLIMIGDRDFDY 637
+ LE EE+ E R +ND EWQFFDTA++ VK G GG+GC+A RREK + MGGPNGGSGG GGS+F RC EGLNTLA +R KVH++A G GQGKSRTG S DV V P GT+VR +G L G+L EH+Q +LVARGGRGGRGNE FK+ R+ P EKGEPG ERWL +ELKLVADVGFVGVPNAGKSTLLA SNA+PKIADYPFTT+ PNLGV D ++KG+VLADIPGLLEGAH+G+GLGLAFLRHVQRCRVLVH+V+GDS DPVGD+ AI QEL LF+PKL +K QVVVL KIDL +Q LE L+K + HTRFMSISA+ NT ELM R+ K++ + +DL +GE LD + + I TDP YPGQFRV G +I +I MT WDYYEAV+RFQR++EA G+ LKK GA+ GDLIMI + DFDY
Sbjct: 93 EALEAEEKAEREALRARNDQEWQFFDTARINVKAGKGGNGCIATRREKGISMGGPNGGSGGRGGSIFLRCSEGLNTLAMVRHKVHYRATDGQNGQGKSRTGNSGADVYVSAPLGTVVRDQEGVLCGELTEHDQELLVARGGRGGRGNEAFKTSRSKIPMFGEKGEPGGERWLSMELKLVADVGFVGVPNAGKSTLLAVSSNAKPKIADYPFTTVTPNLGVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQRCRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQVVVLTKIDLPHVRSKQKELENLIKAELDHTRFMSISAVAGENTQELMRRLRKLVNSL-PPVDDLFDGEAVKMLDSPAAEDTGFSIETDPSYPGQFRVHGARIVQIARMTEWDYYEAVQRFQRVMEAMGVDAALKKAGAQAGDLIMIDEWDFDY 546
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00620.1 ID=NO13G00620.1|Name=NO13G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp CAGGGACCATGGTGCCGCCGCCATCACCCGTGGCCGCCGGCCCTACAACA AGAAGAAGAAGGCATTCTGCGTCAACTTCAAAGACCTTCCACTTACTCCT ACTCCTGGCGGCAGCTAGCTATGCCCGTACCACCACTGGTTTCCTTCAGG TACCCACGCCTTCTAAGGAACTAAGTATAGTACGGCCTGGTGTTGGCATA AGGACAGTGCTTCCACAGACCAGCCTCCTCATCCTCCATGCCGGCAAACG CGGCGGCGGCGGAGGAAAATACAATAGTCAGAAGAAGAAGCAAGTTCAAC AAAACCCCAAAGGGCTGGGCCGCATCGAGCCCCCTGCCACCTCTGCTCCT CCTCCCCCTTCCTCCCCTGACCCCCGCGGGATGCTCTGGGAGGGCGAGGA TGAGGACGAGGACGAGGACGGAGAGGAGGAAGATTCGGAAGTATTGGAAT TTCAGGGGTTGATGGACCGAGGGGCTTTTCAGTTATTGGATGAAAATGAC GTGGAAATTGATGAGAAGTATGACATGTTCGACAAGGAGGACGAGGAAGA GAGGGAGGACGAGTTGGAGGAGGAAGAGGAGGAGGAAGGGGGGGATGGAA GGCCGAAGAACGACCCAGAGTGGCAGTTTTTTGATACGGCCAAGGTGTAC GTTAAAGGAGGCGACGGGGGGGATGGATGTGTGGCGTTCCGACGCGAGAA GTTCGTTGACATGGGAGGGCCGAATGGAGGGAGCGGGGGAGCAGGAGGGA GTGTGTTTTTTCGATGCGACGAGGGATTAAACACACTGGCAGGGCTTAGA TCCAAAGTGCATTGGAAGGCGCTGGGGGGAGGGCGGGGGCAGGGGAAGAG TCGGACGGGACCGTCGGCACAGGATGTGATAGTGGATGTGCCGCCGGGGA CGATTGTGAGGACGTTGGACGGAACGTTAGCTGGGCAGTTGATCGAGCAC AACCAGAGGGTGTTGGTAGCGAGGGGCGGGAGGGGGGGGAGGGGAAATGA GCAGTTTAAGAGCGAGAGGAACAATGCGCCCAAGCTGATGGAGAAAGGGG AGCCCGGGGCCGAACGGTGGCTGCAGGTGGAGTTGAAGCTGGTGGCGGAC GTGGGTTTTGTGGGGGTCCCTAATGCGGGGAAGAGCACCCTCCTGGCGGC TGTGAGTAACGCCAGGCCCAAGATCGCGGATTATCCATTTACCACCATCG TGCCCAATCTGGGAGTGTGGGACGCGTCGGAGACGGTGAAAGGGGAGTGG GTTGAGAAGGGTATGGTCCTCGCGGACATTCCCGGGCTTCTAGAAGGAGC ACATCAAGGCATCGGACTCGGCTTGGCCTTCCTGCGACATGTGCAGCGAT GCCGTGTGTTGGTGCATGTCGTCAACGGAGACAGTCCTGATCCTGTGGGG GATTTCGTGGCCATCAATCAGGAGCTCGCCCTCTTCAATCCGAAGCTAGC GGAGAAACCTCAGGTGGTAGTTCTTAATAAGATTGACCTAATAGAGCCTG AGAGACAAGCACACCTGGAGAAGCTTCTCAAGGAGGCGATCCCCCACACT CGCTTCATGTCCATCTCCGCCATCAAGAAAACCAACACCGCCGAGCTCAT GCACCGGGTGTGGAAGATGCTCAAGGTGATCAAGGACGAGGAAGAGGATT TGCTTAATGGAGAGGTCCCGATTCAATTAGACGAGCAGAGCTTTCGGATG TCCTACCAGATCATCACTGATCCCAAATACCCCGGGCAGTTCCGCGTGCA AGGGAAGCAGATCGAGAAGATTTGCGCCATGACCAATTGGGACTATTATG AGGCTGTGGAGCGGTTTCAACGGATTCTGGAGGCAACGGGCATTGCCAAG ACACTCAAGAAGAGGGGGGCGAAAGAAGGCGACCTGATCATGATCGGCGA TCGTGACTTTGACTATTCCCGAGAGACCAACGCATTCGCCGCTGCCGCCA ACGACATACGCACGTGGGACTCGGAGCAGCGGTATGATGAGGTGGACTAA ACAAAGGGGGAGGGAGGGAGGGAGGGAGGG back to topprotein sequence of NO13G00620.1 >NO13G00620.1-protein ID=NO13G00620.1-protein|Name=NO13G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp MVPPPSPVAAGPTTRRRRHSASTSKTFHLLLLLAAASYARTTTGFLQVPT PSKELSIVRPGVGIRTVLPQTSLLILHAGKRGGGGGKYNSQKKKQVQQNP KGLGRIEPPATSAPPPPSSPDPRGMLWEGEDEDEDEDGEEEDSEVLEFQG LMDRGAFQLLDENDVEIDEKYDMFDKEDEEEREDELEEEEEEEGGDGRPK NDPEWQFFDTAKVYVKGGDGGDGCVAFRREKFVDMGGPNGGSGGAGGSVF FRCDEGLNTLAGLRSKVHWKALGGGRGQGKSRTGPSAQDVIVDVPPGTIV RTLDGTLAGQLIEHNQRVLVARGGRGGRGNEQFKSERNNAPKLMEKGEPG AERWLQVELKLVADVGFVGVPNAGKSTLLAAVSNARPKIADYPFTTIVPN LGVWDASETVKGEWVEKGMVLADIPGLLEGAHQGIGLGLAFLRHVQRCRV LVHVVNGDSPDPVGDFVAINQELALFNPKLAEKPQVVVLNKIDLIEPERQ AHLEKLLKEAIPHTRFMSISAIKKTNTAELMHRVWKMLKVIKDEEEDLLN GEVPIQLDEQSFRMSYQIITDPKYPGQFRVQGKQIEKICAMTNWDYYEAV ERFQRILEATGIAKTLKKRGAKEGDLIMIGDRDFDYSRETNAFAAAANDI RTWDSEQRYDEVD* back to topmRNA from alignment at chr13:210420..214585- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00620.1 ID=NO13G00620.1|Name=NO13G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=4166bp|location=Sequence derived from alignment at chr13:210420..214585- (Nannochloropsis oceanica) CAGGGACCATGGTGCCGCCGCCATCACCCGTGGCCGCCGGCCCTACAACA
AGAAGAAGAAGGCATTCTGCGTCAACTTCAAAGACCTTCCACTTACTCCT
ACTCCTGGCGGCAGCTAGCTATGCCCGTACCACCACTGGTTTCCTTCAGG
TACCCACGCCTTCTAAGGAACTAAGTATAGTACGGCCTGGTGTTGGCATA
AGGACAGTGCTTCCACAGACCAGGTACGTGAGAATTGGGTGAAAAAGGGA
AGTACGACCGCAATATCTGCTGCTCCGCTGCACGTCATGTTAAGGGTTGT
GCACAGAGAGAGACATACAGCTGGTGTTGCGCATCATTTCCACTGCTTCC
AGTTTTGGAATGTATTATTTGACCTGTCTGTAGCGCTACTGTGCTTGCTG
GATACGTATATATCAACCCTTAGACCAAATTCAACCTTGCCCATATCTCA
TTCCCCTCCTCCTTCCCTCCCGTCACCTCTCCATCAAAATATAGCCTCCT
CATCCTCCATGCCGGCAAACGCGGCGGCGGCGGAGGAAAATACAATAGTC
AGAAGAAGAAGCAAGTTCAACAAAACCCCAAAGGGCTGGGCCGCATCGAG
CCCCCTGCCACCTCTGCTCCTCCTCCCCCTTCCTCCCCTGACCCCCGCGG
GATGCTCTGGGAGGGCGAGGATGAGGACGAGGACGAGGACGGAGAGGAGG
AAGATTCGGAAGTATTGGAATTTCAGGGGTTGATGGACCGAGGGGCTTTT
CAGTTATTGGATGAAAATGACGTGGAAATTGATGAGAAGTATGACATGTT
CGACAAGGAGGACGAGGAAGAGAGGGAGGACGAGTTGGAGGAGGAAGAGG
AGGAGGAAGGGGGGGATGGAAGGCCGAAGAACGACCCAGAGTGGCAGTTT
TTTGATACGGCCAAGGTGTACGTTAAAGGAGGCGACGGGGGGGATGGATG
TGTGGCGTTCCGACGCGAGAAGTTCGTTGACATGGGAGGGCCGAATGGAG
GGAGCGGGGGAGCAGGAGGGAGTGTGTTTTTTCGATGCGACGAGGGATTA
AACACACTGGCAGGGCTTAGATCCAAAGTGCATTGGAAGGCGCTGGGGGG
AGGGCGGGGGCAGGGGAAGAGTCGGACGGGACCGTCGGCACAGGATGTGA
TAGTGGATGTGCCGCCGGGGACGATTGTGAGGACGTTGGACGGAACGTTA
GCTGGGCAGTTGATCGAGCACAACCAGAGGGTGTTGGTAGCGAGGGGCGG
GAGGGGGGGGAGGGGAAATGAGCAGTTTAAGAGCGAGAGGAACAATGCGC
CCAAGCTGATGGAGAAAGGGGAGCCCGGGGCCGAACGGTGGCTGCAGGTG
GAGTTGAAGCTGGTGAGGGACAGAGGGAGGGAGGGAGGGAGGGAGGGAGG
CAAGAAAGGAAGGTAGGGCGCTCGGACGGGTATTTCGATATAATCACTTG
AAATAAAGTTGCCCACCCCCGTTCCTCCCTCGCTGGATGGCGGACAAAAG
AGCTGTTTGGCGTGCGGCCACGAAGAACCCCCGCTCTCCAATGACATATC
TCAGGCTGTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCTGT
TCCATCAGGTGGCGGACGTGGGTTTTGTGGGGGTCCCTAATGCGGGGAAG
AGCACCCTCCTGGCGGCTGTGAGTAACGCCAGGCCCAAGATCGCGGATTA
TCCATTTACCACCATCGTGCCCAATCTGGGAGTGTGGGACGCGTCGGAGA
CGGTGAAAGGTGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAC
GAAGAGGCGTTGCTCTCTTGAGCTACCATAGCCCTATTTTTGCCCAACTC
TCCAAACTGATAAACACCTCTCGCTCATTTCTTCCTCCCCCCTCCCTCCC
TCCCTTCCTCCCTCCCTGCCACACTAACTTCCCTTCCGTCTTGTTTCATT
TTCGCAGGGGAGTGGGTTGAGAAGGGTATGGTCCTCGCGGACATTCCCGG
GCTTCTAGAAGGAGCACATCAAGGCATCGGACTCGGCTTGGCCTTCCTGC
GGTAGGTGAAGGGGCTGCGAGAGGGAGGGGAGGGAGGGAGGGTAGGGAGG
GAGGGGATAGGTAGATCCAGACTTGACGAGTCAGGTGTCTGTCCCCATCT
CTCTCCTCCTCCCTCCCTCCTCCTCATCATTTGCATTTCATTCTTCCCCT
ACCTACCTCCCTCCCTCCTCACATGCGTTTTGATCCTTTCAGCTACCTCT
ACCACACGCATGTGTGTCTTGTGTCCCTCTCTTTCTTCCTCCCTCCTTCT
CTCCTCCTCATTTCTTACACCTCGATTTTTTTTCCACTAACACCTTACAG
ACATGTGCAGCGATGCCGTGTGTTGGTGCATGTCGTCAACGGAGACAGTC
CTGATCCTGTGGGGGATTTCGTGGCCATCAATCAGGTGCACCTCCTTCCC
TCCCTCCCCCCCTCCCTGCCCCCCTCCCTCCCTCCATCCCTCCCTCCCTT
TCTCCCTCCCATCCCCTTCCCTATGCCTTTGGTGATGTAAGCTGCGCAGG
CCAAGGTTTCTTTTCGTTGTCGCCTAACGCTCTGCTTACACCGACTCTCC
CTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCAGGAGCT
CGCCCTCTTCAATCCGAAGCTAGCGGAGAAACCTCAGGTGGTAGTTCTTA
ATAAGATTGACCTAATAGAGCCTGAGAGACAAGCACACCTGGAGAAGCTT
CTCAAGGAGGTACAAAGCAAGGGAGGCAGGGAGGGAGGGAGGGAGGGGGG
GAGGAAGGGAGTGTGTGTGGGGGGAAAGATTTCCTCGCTGTGCATAGGCG
TGCATCTCACCATCACGTCTTTATCTCTCCTCCCTCCCGCCCTCCTGCCC
TCCCTTCTTCCCTCCTTTCCTCCTTCCCTTCCTCCCTCCCTCCTTCCCCC
CCTCCATTCAGGCGATCCCCCACACTCGCTTCATGTCCATCTCCGCCATC
AAGAAAACCAACACCGCCGAGCTCATGCACCGGGTAGGAAGGAGGGAGGG
AGGGAGGGAGGGAAGGAGGGAGGGAGGGAGAGGAGTGAGGGCCCGTTAGA
GTGAAATCTTAAGTGCTCAAAGGCTTTCCATCCCTCCCTCCCTCCCTCCC
TCTCTCCTCTAATTCCAGGTGTGGAAGATGCTCAAGGTGATCAAGGACGA
GGAAGAGGATTTGCTTAATGGAGAGGTCCCGATTCAATTAGACGAGCAGA
GCTTTCGGATGTCCTACCAGATCATCACTGATCCCAAATACCCCGGGCAG
TTCCGCGTGGTAGGGAGGGAGGAAGGGAGGGAGGGAGATGCTTAGTTCAC
TGTGTCCTTACTCTCATGTATCGGCCTCTTTCTCATCCTTTCTCCGTCCC
TTCCTCCTTCCCTACATCGTTTTATGCTGTGATTATAGCAAGGGAAGCAG
ATCGAGAAGATTTGCGCCATGACCAATTGGGACTATTATGAGGCTGTGGA
GCGGTGGGTGATGAGGGGGGAGGGAGGGAGGGAGGGAAGGAGGGAAAATG
GGCTTGGAAAAGCACAGGCTGTCACGCTATTCGTTTGTTGTCTTCCTTAT
TGTTTTCCTCGCCTCGATTGTCTATGAATGGTTTCACTCATCTTGATTAT
CTTCTCACGCTTTCTCTCACCCTGACTGTCTCTCTTTACGTTTCGCCCCG
ACCTCCTCATTGCAGGTTTCAACGGATTCTGGAGGCAACGGGCATTGCCA
AGACACTCAAGAAGAGGGGGGCGAAAGAAGGTGAGTCCCGTCTGTCCATC
TGTCAGTGGGAGTGTGATGAGCAGGGATGGAATCAACATCGGAGGGAACA
GGGAAGGGGGGTGGGAAGGTGGGGGGCATAGCAAAGACATTCTATGAAGA
AGGTGAGTCCCCTCTGACTGTCGGTCAGTGCCGAATGAGTGGGAGTGTGA
TGAGATGGGGTGGGATCGTTTCAATGTTCCCAGTGCTAATCCCCCTCCCT
CCCTCCCTCCTCAGGCGACCTGATCATGATCGGCGATCGTGACTTTGACT
ATTCCCGAGAGACCAACGCATTCGCCGCTGCCGCCAACGACATACGCACG
TGGGACTCGGAGCAGCGGTATGATGAGGTGGACTAAACAAAGGGGGAGGG
AGGGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at chr13:210420..214585- >NO13G00620.1 ID=NO13G00620.1|Name=NO13G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at chr13:210420..214585- (Nannochloropsis oceanica) ATGGTGCCGCCGCCATCACCCGTGGCCGCCGGCCCTACAACAAGAAGAAG AAGGCATTCTGCGTCAACTTCAAAGACCTTCCACTTACTCCTACTCCTGG CGGCAGCTAGCTATGCCCGTACCACCACTGGTTTCCTTCAGGTACCCACG CCTTCTAAGGAACTAAGTATAGTACGGCCTGGTGTTGGCATAAGGACAGT GCTTCCACAGACCAGCCTCCTCATCCTCCATGCCGGCAAACGCGGCGGCG GCGGAGGAAAATACAATAGTCAGAAGAAGAAGCAAGTTCAACAAAACCCC AAAGGGCTGGGCCGCATCGAGCCCCCTGCCACCTCTGCTCCTCCTCCCCC TTCCTCCCCTGACCCCCGCGGGATGCTCTGGGAGGGCGAGGATGAGGACG AGGACGAGGACGGAGAGGAGGAAGATTCGGAAGTATTGGAATTTCAGGGG TTGATGGACCGAGGGGCTTTTCAGTTATTGGATGAAAATGACGTGGAAAT TGATGAGAAGTATGACATGTTCGACAAGGAGGACGAGGAAGAGAGGGAGG ACGAGTTGGAGGAGGAAGAGGAGGAGGAAGGGGGGGATGGAAGGCCGAAG AACGACCCAGAGTGGCAGTTTTTTGATACGGCCAAGGTGTACGTTAAAGG AGGCGACGGGGGGGATGGATGTGTGGCGTTCCGACGCGAGAAGTTCGTTG ACATGGGAGGGCCGAATGGAGGGAGCGGGGGAGCAGGAGGGAGTGTGTTT TTTCGATGCGACGAGGGATTAAACACACTGGCAGGGCTTAGATCCAAAGT GCATTGGAAGGCGCTGGGGGGAGGGCGGGGGCAGGGGAAGAGTCGGACGG GACCGTCGGCACAGGATGTGATAGTGGATGTGCCGCCGGGGACGATTGTG AGGACGTTGGACGGAACGTTAGCTGGGCAGTTGATCGAGCACAACCAGAG GGTGTTGGTAGCGAGGGGCGGGAGGGGGGGGAGGGGAAATGAGCAGTTTA AGAGCGAGAGGAACAATGCGCCCAAGCTGATGGAGAAAGGGGAGCCCGGG GCCGAACGGTGGCTGCAGGTGGAGTTGAAGCTGGTGGCGGACGTGGGTTT TGTGGGGGTCCCTAATGCGGGGAAGAGCACCCTCCTGGCGGCTGTGAGTA ACGCCAGGCCCAAGATCGCGGATTATCCATTTACCACCATCGTGCCCAAT CTGGGAGTGTGGGACGCGTCGGAGACGGTGAAAGGGGAGTGGGTTGAGAA GGGTATGGTCCTCGCGGACATTCCCGGGCTTCTAGAAGGAGCACATCAAG GCATCGGACTCGGCTTGGCCTTCCTGCGACATGTGCAGCGATGCCGTGTG TTGGTGCATGTCGTCAACGGAGACAGTCCTGATCCTGTGGGGGATTTCGT GGCCATCAATCAGGAGCTCGCCCTCTTCAATCCGAAGCTAGCGGAGAAAC CTCAGGTGGTAGTTCTTAATAAGATTGACCTAATAGAGCCTGAGAGACAA GCACACCTGGAGAAGCTTCTCAAGGAGGCGATCCCCCACACTCGCTTCAT GTCCATCTCCGCCATCAAGAAAACCAACACCGCCGAGCTCATGCACCGGG TGTGGAAGATGCTCAAGGTGATCAAGGACGAGGAAGAGGATTTGCTTAAT GGAGAGGTCCCGATTCAATTAGACGAGCAGAGCTTTCGGATGTCCTACCA GATCATCACTGATCCCAAATACCCCGGGCAGTTCCGCGTGCAAGGGAAGC AGATCGAGAAGATTTGCGCCATGACCAATTGGGACTATTATGAGGCTGTG GAGCGGTTTCAACGGATTCTGGAGGCAACGGGCATTGCCAAGACACTCAA GAAGAGGGGGGCGAAAGAAGGCGACCTGATCATGATCGGCGATCGTGACT TTGACTATTCCCGAGAGACCAACGCATTCGCCGCTGCCGCCAACGACATA CGCACGTGGGACTCGGAGCAGCGGTATGATGAGGTGGACTAA back to top
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