NO13G00540.1, NO13G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00540.1
Unique NameNO13G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1410
Alignment locationchr13:187853..189262 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:187853..189262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00540NO13G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00540.1NO13G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00540.1.cds1NO13G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00540.1 ID=NO13G00540.1|Name=NO13G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
AACAACAGGCAGGACAGCATGAACAGCAGTAGCAATGGCAGTACTGTTAA
GGAGCGCCCAAGAGCGGGGGGCTGGAGCGAGGCGGAGCTTCTATCCATGG
CTTTCAGGAAAAAACAGAGGGAGGAGGCGGAGGAGGCAGCACAGCAACTG
GAGCGCAGGTGTACAAGCAAGAACACTAAAAAGAACAAGAAGAAGAAGAC
GAGGAAGCGTCGGCACTCTTTCTCCTCTTTCTCCTCCTCCTCCATGTCAC
GCTCTCGCTCTCCACTGCCCACCCGTCATCGTGTTGCCTCCCCTCCACCC
CCAGACCCCTACTCATCCCTCCTCCGTCAGGGAGGCTCGTTTGCCCGCCA
TCACCGAGACCGTCCTTACCTTCCTCCGCCCACCTCGACACGTGATTGTG
GCTATCACTGTAAAAGTAGGGAAGAAGACGACCGCAGAGGCCGAAGCAGG
AGCAGGAGCAGGAGAAGGAGGAGTACCAGTTGGAATCGGAGGAGGAAGCA
GCGGAGCAGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCA
TCCGGAGCAGCAGTGACGGTAGACGTAAGCACAAGATAGACACCGAGAAA
TCCGCCTCCGGCTCCCGTGAACGAAACCGTGGCACCGATGACGACGACAG
CCACGGTTCAAGGAAAGGGCGGCGGCATCAGCGGAAGCATAGCAGTCAGG
TGAGCATGACTAGCTCTCTCTCTACCCACCAAAGCGACGCTGCTTGGCCT
TTGGGTGAGGTTGATGAATTTGGCCGCACCACCACCTTGCACAAACGTAC
GGTGGCCAGGCCTACCCGCAGCAGTAGCAGCAGCGCGGACAGAGGAGAGG
GAGAGAGCTCGAAATGCCGTCGTTATCGCAGCAACGGGAAGAGGACGATG
GCGCGAAACCGTGAGCATTCCTGGTCTCAGTCTCGCTCCCGTTCACGTTC
CTGTGCCAAGAATCGCAGTCGGAGTCGGAGCCGGAGTTGTGGTAGCCAGA
AGAGGAGAAGTAGGGAGAGGAGCAGGAGTAGGGAGAGGGCATGGAGTCCA
GGCCCTGACAATCTAAGGCAGTGGAACCGCGATAAATTTGCAGAGGTGGT
GCGGGAGGAAGAGGAGGAAGGTAGGGAGACGGGGGGGAAGGAAGGCCGGA
GTCCGTATAGGAGAGTGTCGAGAGACTACGTCCCGCCATTGCCGACGTGG
AAGAGCAAAGCCGGGGGGGTGTATATTCCAATAGTGCGGAAGTAAGTGAG
TTCGTGCAAGGGACCTTGAAATCCCTAGGACCTTTCCATCTTTCGATGAC
ATGACCACCAAGAGAAACTCTTGGGGCTTTGTCGTGTCAGCCAGCCCCCT
ATTTAAAATGAAAGCCTTAGGATCGCCCATAGGGTAAAGCACGAATCACA
ATTATAGGAA
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protein sequence of NO13G00540.1

>NO13G00540.1-protein ID=NO13G00540.1-protein|Name=NO13G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MNSSSNGSTVKERPRAGGWSEAELLSMAFRKKQREEAEEAAQQLERRCTS
KNTKKNKKKKTRKRRHSFSSFSSSSMSRSRSPLPTRHRVASPPPPDPYSS
LLRQGGSFARHHRDRPYLPPPTSTRDCGYHCKSREEDDRRGRSRSRSRRR
RSTSWNRRRKQRSRSRSRSRSRSRSRSIRSSSDGRRKHKIDTEKSASGSR
ERNRGTDDDDSHGSRKGRRHQRKHSSQVSMTSSLSTHQSDAAWPLGEVDE
FGRTTTLHKRTVARPTRSSSSSADRGEGESSKCRRYRSNGKRTMARNREH
SWSQSRSRSRSCAKNRSRSRSRSCGSQKRRSRERSRSRERAWSPGPDNLR
QWNRDKFAEVVREEEEEGRETGGKEGRSPYRRVSRDYVPPLPTWKSKAGG
VYIPIVRK*
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mRNA from alignment at chr13:187853..189262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00540.1 ID=NO13G00540.1|Name=NO13G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at chr13:187853..189262- (Nannochloropsis oceanica)
AACAACAGGCAGGACAGCATGAACAGCAGTAGCAATGGCAGTACTGTTAA GGAGCGCCCAAGAGCGGGGGGCTGGAGCGAGGCGGAGCTTCTATCCATGG CTTTCAGGAAAAAACAGAGGGAGGAGGCGGAGGAGGCAGCACAGCAACTG GAGCGCAGGTGTACAAGCAAGAACACTAAAAAGAACAAGAAGAAGAAGAC GAGGAAGCGTCGGCACTCTTTCTCCTCTTTCTCCTCCTCCTCCATGTCAC GCTCTCGCTCTCCACTGCCCACCCGTCATCGTGTTGCCTCCCCTCCACCC CCAGACCCCTACTCATCCCTCCTCCGTCAGGGAGGCTCGTTTGCCCGCCA TCACCGAGACCGTCCTTACCTTCCTCCGCCCACCTCGACACGTGATTGTG GCTATCACTGTAAAAGTAGGGAAGAAGACGACCGCAGAGGCCGAAGCAGG AGCAGGAGCAGGAGAAGGAGGAGTACCAGTTGGAATCGGAGGAGGAAGCA GCGGAGCAGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCA TCCGGAGCAGCAGTGACGGTAGACGTAAGCACAAGATAGACACCGAGAAA TCCGCCTCCGGCTCCCGTGAACGAAACCGTGGCACCGATGACGACGACAG CCACGGTTCAAGGAAAGGGCGGCGGCATCAGCGGAAGCATAGCAGTCAGG TGAGCATGACTAGCTCTCTCTCTACCCACCAAAGCGACGCTGCTTGGCCT TTGGGTGAGGTTGATGAATTTGGCCGCACCACCACCTTGCACAAACGTAC GGTGGCCAGGCCTACCCGCAGCAGTAGCAGCAGCGCGGACAGAGGAGAGG GAGAGAGCTCGAAATGCCGTCGTTATCGCAGCAACGGGAAGAGGACGATG GCGCGAAACCGTGAGCATTCCTGGTCTCAGTCTCGCTCCCGTTCACGTTC CTGTGCCAAGAATCGCAGTCGGAGTCGGAGCCGGAGTTGTGGTAGCCAGA AGAGGAGAAGTAGGGAGAGGAGCAGGAGTAGGGAGAGGGCATGGAGTCCA GGCCCTGACAATCTAAGGCAGTGGAACCGCGATAAATTTGCAGAGGTGGT GCGGGAGGAAGAGGAGGAAGGTAGGGAGACGGGGGGGAAGGAAGGCCGGA GTCCGTATAGGAGAGTGTCGAGAGACTACGTCCCGCCATTGCCGACGTGG AAGAGCAAAGCCGGGGGGGTGTATATTCCAATAGTGCGGAAGTAAGTGAG TTCGTGCAAGGGACCTTGAAATCCCTAGGACCTTTCCATCTTTCGATGAC ATGACCACCAAGAGAAACTCTTGGGGCTTTGTCGTGTCAGCCAGCCCCCT ATTTAAAATGAAAGCCTTAGGATCGCCCATAGGGTAAAGCACGAATCACA ATTATAGGAA
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Coding sequence (CDS) from alignment at chr13:187853..189262-

>NO13G00540.1 ID=NO13G00540.1|Name=NO13G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr13:187853..189262- (Nannochloropsis oceanica)
ATGAACAGCAGTAGCAATGGCAGTACTGTTAAGGAGCGCCCAAGAGCGGG
GGGCTGGAGCGAGGCGGAGCTTCTATCCATGGCTTTCAGGAAAAAACAGA
GGGAGGAGGCGGAGGAGGCAGCACAGCAACTGGAGCGCAGGTGTACAAGC
AAGAACACTAAAAAGAACAAGAAGAAGAAGACGAGGAAGCGTCGGCACTC
TTTCTCCTCTTTCTCCTCCTCCTCCATGTCACGCTCTCGCTCTCCACTGC
CCACCCGTCATCGTGTTGCCTCCCCTCCACCCCCAGACCCCTACTCATCC
CTCCTCCGTCAGGGAGGCTCGTTTGCCCGCCATCACCGAGACCGTCCTTA
CCTTCCTCCGCCCACCTCGACACGTGATTGTGGCTATCACTGTAAAAGTA
GGGAAGAAGACGACCGCAGAGGCCGAAGCAGGAGCAGGAGCAGGAGAAGG
AGGAGTACCAGTTGGAATCGGAGGAGGAAGCAGCGGAGCAGAAGCAGGAG
CAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCATCCGGAGCAGCAGTGACG
GTAGACGTAAGCACAAGATAGACACCGAGAAATCCGCCTCCGGCTCCCGT
GAACGAAACCGTGGCACCGATGACGACGACAGCCACGGTTCAAGGAAAGG
GCGGCGGCATCAGCGGAAGCATAGCAGTCAGGTGAGCATGACTAGCTCTC
TCTCTACCCACCAAAGCGACGCTGCTTGGCCTTTGGGTGAGGTTGATGAA
TTTGGCCGCACCACCACCTTGCACAAACGTACGGTGGCCAGGCCTACCCG
CAGCAGTAGCAGCAGCGCGGACAGAGGAGAGGGAGAGAGCTCGAAATGCC
GTCGTTATCGCAGCAACGGGAAGAGGACGATGGCGCGAAACCGTGAGCAT
TCCTGGTCTCAGTCTCGCTCCCGTTCACGTTCCTGTGCCAAGAATCGCAG
TCGGAGTCGGAGCCGGAGTTGTGGTAGCCAGAAGAGGAGAAGTAGGGAGA
GGAGCAGGAGTAGGGAGAGGGCATGGAGTCCAGGCCCTGACAATCTAAGG
CAGTGGAACCGCGATAAATTTGCAGAGGTGGTGCGGGAGGAAGAGGAGGA
AGGTAGGGAGACGGGGGGGAAGGAAGGCCGGAGTCCGTATAGGAGAGTGT
CGAGAGACTACGTCCCGCCATTGCCGACGTGGAAGAGCAAAGCCGGGGGG
GTGTATATTCCAATAGTGCGGAAGTAA
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Synonyms
Publications