NO13G00530.1, NO13G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00530.1
Unique NameNO13G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr13:185188..187234 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:185188..187234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G00530.1 vs.
Match: XP_005853973.1 (transmembrane protease, serine 2 [Nannochloropsis gaditana CCMP526]; EKU22389.1 transmembrane protease, serine 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 802.7 bits (2072), Expect = 7.600e-229
Identity = 412/599 (68.78%), Postives = 482/599 (80.47%), Query Frame = 0 
Query:    1 MRLTSSSSAFLAALAF---MTSGCASAAPSAADLKDNQPRGPVLPLRPISQVPFNAPSFIVGGELADSNESKWTVALVTNTHGRLFQFCGGTLVAPKFVVTAAHCVAAGYEMSAILGRYTLSDSTQGEMIKVAEAFMHPEYDPNTMTGDIAILRLETAAPADIPILPLIPTMQAKGMTEGEMVTVLGWGLTEERAQKEQ--KEAPPVQGSGTDVLRSVTLPIIGNKKCNAEYRALTGKESILDEEVCAGVDRGGLDSCQGDSGGPLTATVGGTTYLFGVVSWGIGCARAKVPGVYTRISAHADWLASKMLLEVVTDTGRGLGAVTVLFAGVGRVATLPLLINSLASAALDVSIGFAKNAAKGFSVDTSKLSLASAGKVGQAVVTYSSDKAQVDTTSLILQVAQGGKQAGEQSFGLTAFSLPAADFGVAFDGDWFSGADSGRNAWVMDGGEINSGVTKDEQTNVALMYIKGAGELSFKWRSSCEETYDVLYMFLNNEPVDALTGDSGWVTKSLLIEGGEEEVHTVAFAFVKDKSMGKYQDKAFVKDVQFGARAQAGMERFVQVPTVTSKAATTTVKPSKGWSAVREAGDVERKGRGLRGA 595
            MR T +SS  +  +AF   +    AS+AP+A DLK   P+GP+LPLRPI+Q PF+ PSFIVGG LAD ++SKWTVALVT+THGRLFQFCGGTL++PKFVVTAAHCVAAGY+MSA++GRY LSD++ GEMIKVAEAFMHPEYDP TM GDIAILRLE A  +DIP LPLIP  +AK + EG++VTVLGWGLTEER+QK    K   PVQGSGTDVLR+VTLP++ N KCN EYRA+T K+SILDEEVCAGVDRGGLDSCQGDSGGPLTATV G TYLFGVVSWG+GCARAKVPGVYTR+S HADWLASKMLLEV T +GRGLGAV VLFAGV R A   + I SLAS AL +++GFAK ++  F++D SKLSL ++G V  A V+Y S +A+V +  + LQ+ +GGKQ GEQ+  LTAF+LP ADFG AF G+WFSGADSG NAWV+DGGEI+SG T D QTNVAL+Y+KG+G L+FKWRSS EETYD++Y FL+NEPVDALTGDSGW++KSLLIEG EEE HTVAFA+VKDKSMGKYQDKAFVKD+ FGA A AGMERF  +               KG +  R AG V  KGRGLRG+
Sbjct:    1 MRYTQASSVIMLMVAFGAFLGDNFASSAPTAEDLKAQAPQGPMLPLRPIAQTPFHGPSFIVGGGLADRSDSKWTVALVTDTHGRLFQFCGGTLISPKFVVTAAHCVAAGYDMSAVVGRYQLSDASSGEMIKVAEAFMHPEYDPQTMQGDIAILRLERAVSSDIPTLPLIPPTKAKMVNEGQLVTVLGWGLTEERSQKVDSVKGGLPVQGSGTDVLRAVTLPVVANAKCNEEYRAVTAKDSILDEEVCAGVDRGGLDSCQGDSGGPLTATVNGKTYLFGVVSWGVGCARAKVPGVYTRVSYHADWLASKMLLEVATGSGRGLGAVNVLFAGVNRAAAFSVYIRSLASNALGLTLGFAKGSSSNFNIDESKLSLPASGAVESATVSYKSTRAEVASAEVSLQINEGGKQVGEQTIALTAFALPVADFGKAFPGEWFSGADSGANAWVVDGGEIHSGNTHDAQTNVALLYLKGSGVLNFKWRSSSEETYDIVYFFLDNEPVDALTGDSGWLSKSLLIEGEEEEEHTVAFAYVKDKSMGKYQDKAFVKDLHFGAMADAGMERFAPI-------------LPKGKAGARPAGKV-AKGRGLRGS 585
The following BLAST results are available for this feature:
BLAST of NO13G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853973.17.600e-22968.78transmembrane protease, serine 2 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00530NO13G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00530.1NO13G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00530.1.cds1NO13G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00530.1.cds2NO13G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00530.1 ID=NO13G00530.1|Name=NO13G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ATGCGTCTCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCCTTTAT
GACCTCTGGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAAGGACA
ATCAGCCTCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAGTCCCC
TTCAACGCCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGTAACGA
GTCCAAGTGGACGGTGGCCCTGGTGACCAACACGCATGGCCGCCTCTTTC
AATTCTGCGGCGGCACTCTGGTTGCACCCAAATTCGTGGTCACCGCCGCG
CATTGTGTAGCCGCCGGCTACGAAATGTCTGCGATACTGGGACGGTATAC
CTTGTCAGATTCTACGCAGGGGGAGATGATCAAGGTGGCTGAAGCGTTCA
TGCACCCTGAGTACGACCCCAATACGATGACCGGGGACATTGCCATTTTG
AGGCTTGAAACTGCCGCCCCTGCTGATATTCCAATTTTGCCTCTAATCCC
CACGATGCAAGCGAAGGGGATGACGGAGGGGGAGATGGTGACGGTATTGG
GGTGGGGGTTGACGGAGGAGAGGGCGCAGAAGGAGCAGAAGGAGGCCCCC
CCTGTGCAGGGCTCCGGGACAGATGTCCTTCGCTCAGTCACCTTGCCGAT
TATAGGAAATAAAAAGTGTAATGCGGAATATCGGGCGTTGACGGGCAAAG
AATCGATCCTGGACGAGGAGGTCTGCGCGGGGGTGGATCGTGGGGGACTA
GACTCGTGCCAGGGGGATAGCGGAGGACCCTTGACAGCGACGGTAGGAGG
GACGACCTACCTGTTTGGTGTTGTTTCATGGGGCATTGGCTGTGCGAGGG
CCAAGGTGCCGGGAGTGTATACCCGAATTTCGGCGCATGCGGATTGGCTG
GCGAGCAAGATGCTTTTGGAGGTGGTAACGGACACCGGTCGGGGCCTGGG
CGCCGTTACAGTGTTGTTCGCTGGGGTGGGACGTGTCGCGACGCTGCCTC
TGCTGATCAATTCCTTAGCATCTGCTGCCTTGGATGTCTCTATTGGGTTT
GCCAAGAATGCGGCAAAAGGATTCAGTGTCGATACGTCCAAGCTTTCTCT
TGCGTCGGCTGGGAAGGTGGGTCAGGCCGTGGTGACTTACTCCTCGGACA
AGGCGCAGGTAGATACGACTTCGCTGATCCTGCAGGTAGCACAAGGAGGA
AAGCAGGCAGGTGAACAATCCTTTGGCTTGACTGCGTTCTCTTTGCCTGC
AGCGGATTTTGGGGTGGCTTTTGATGGGGATTGGTTCTCGGGAGCGGATA
GCGGGAGAAATGCGTGGGTCATGGATGGGGGGGAGATCAATTCAGGGGTT
ACCAAGGATGAGCAGACAAATGTGGCACTCATGTACATCAAGGGCGCGGG
GGAGTTAAGCTTCAAGTGGAGGAGTTCGTGCGAGGAGACTTATGATGTGC
TTTACATGTTTTTGAATAATGAGCCCGTGGATGCGTTGACCGGCGACTCG
GGGTGGGTGACCAAGAGTTTGCTGATCGAGGGAGGGGAGGAGGAGGTGCA
CACCGTGGCGTTTGCCTTTGTGAAGGACAAGTCCATGGGGAAATATCAAG
ACAAGGCGTTTGTTAAGGACGTGCAGTTTGGAGCACGGGCACAGGCAGGA
ATGGAACGGTTCGTCCAGGTCCCGACCGTGACTTCGAAGGCGGCGACGAC
GACGGTGAAGCCGTCCAAGGGATGGAGTGCAGTGAGGGAGGCGGGTGATG
TAGAAAGGAAGGGACGAGGGTTGAGGGGGGCGGTAAAGGAGGAAAGGGAG
TCGTCTTCGGCCTGA
back to top

protein sequence of NO13G00530.1

>NO13G00530.1-protein ID=NO13G00530.1-protein|Name=NO13G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MRLTSSSSAFLAALAFMTSGCASAAPSAADLKDNQPRGPVLPLRPISQVP
FNAPSFIVGGELADSNESKWTVALVTNTHGRLFQFCGGTLVAPKFVVTAA
HCVAAGYEMSAILGRYTLSDSTQGEMIKVAEAFMHPEYDPNTMTGDIAIL
RLETAAPADIPILPLIPTMQAKGMTEGEMVTVLGWGLTEERAQKEQKEAP
PVQGSGTDVLRSVTLPIIGNKKCNAEYRALTGKESILDEEVCAGVDRGGL
DSCQGDSGGPLTATVGGTTYLFGVVSWGIGCARAKVPGVYTRISAHADWL
ASKMLLEVVTDTGRGLGAVTVLFAGVGRVATLPLLINSLASAALDVSIGF
AKNAAKGFSVDTSKLSLASAGKVGQAVVTYSSDKAQVDTTSLILQVAQGG
KQAGEQSFGLTAFSLPAADFGVAFDGDWFSGADSGRNAWVMDGGEINSGV
TKDEQTNVALMYIKGAGELSFKWRSSCEETYDVLYMFLNNEPVDALTGDS
GWVTKSLLIEGGEEEVHTVAFAFVKDKSMGKYQDKAFVKDVQFGARAQAG
MERFVQVPTVTSKAATTTVKPSKGWSAVREAGDVERKGRGLRGAVKEERE
SSSA*
back to top

mRNA from alignment at chr13:185188..187234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00530.1 ID=NO13G00530.1|Name=NO13G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr13:185188..187234+ (Nannochloropsis oceanica)
ATGCGTCTCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCCTTTAT
GACCTCTGGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAAGGACA
ATCAGCCTCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAGTCCCC
TTCAACGCCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGTAACGA
GTCCAAGTGGACGGTGGCCCTGGTGACCAACACGCATGTAAGCCACAAGC
CCTCAGCGCAAATCATTGCTAGCCCTGCCTTTCCCCCCTTCCTCTGATTG
TGTGTACCGCTGCTTGCCGTGTTCACGTCCTTTTCCTTGTCTGAATTCCA
CCCTTACTTGTTAATGTCCTCATTGTCATAATCTCTCTAACCCCTTCAAA
TACTCTCCTCCGAAGATCACCTCCACTCACCCTTTCCTCCTCGCCTACCC
ACCCCCGTCATACCCCTAGGGCCGCCTCTTTCAATTCTGCGGCGGCACTC
TGGTTGCACCCAAATTCGTGGTCACCGCCGCGCATTGTGTAGCCGCCGGC
TACGAAATGTCTGCGATACTGGGACGGTATACCTTGTCAGATTCTACGCA
GGGGGAGATGATCAAGGTGGCTGAAGCGTTCATGCACCCTGAGTACGACC
CCAATACGATGACCGGGGACATTGCCATTTTGAGGCTTGAAACTGCCGCC
CCTGCTGATATTCCAATTTTGCCTCTAATCCCCACGATGCAAGCGAAGGG
GATGACGGAGGGGGAGATGGTGACGGTATTGGGGTGGGGGTTGACGGAGG
AGAGGGCGCAGAAGGAGCAGAAGGAGGCCCCCCCTGTGCAGGGCTCCGGG
ACAGATGTCCTTCGCTCAGTCACCTTGCCGATTATAGGAAATAAAAAGTG
TAATGCGGAATATCGGGCGTTGACGGGCAAAGAATCGATCCTGGACGAGG
AGGTCTGCGCGGGGGTGGATCGTGGGGGACTAGACTCGTGCCAGGGGGAT
AGCGGAGGACCCTTGACAGCGACGGTAGGAGGGACGACCTACCTGTTTGG
TGTTGTTTCATGGGGCATTGGCTGTGCGAGGGCCAAGGTGCCGGGAGTGT
ATACCCGAATTTCGGCGCATGCGGATTGGCTGGCGAGCAAGATGCTTTTG
GAGGTGGTAACGGACACCGGTCGGGGCCTGGGCGCCGTTACAGTGTTGTT
CGCTGGGGTGGGACGTGTCGCGACGCTGCCTCTGCTGATCAATTCCTTAG
CATCTGCTGCCTTGGATGTCTCTATTGGGTTTGCCAAGAATGCGGCAAAA
GGATTCAGTGTCGATACGTCCAAGCTTTCTCTTGCGTCGGCTGGGAAGGT
GGGTCAGGCCGTGGTGACTTACTCCTCGGACAAGGCGCAGGTAGATACGA
CTTCGCTGATCCTGCAGGTAGCACAAGGAGGAAAGCAGGCAGGTGAACAA
TCCTTTGGCTTGACTGCGTTCTCTTTGCCTGCAGCGGATTTTGGGGTGGC
TTTTGATGGGGATTGGTTCTCGGGAGCGGATAGCGGGAGAAATGCGTGGG
TCATGGATGGGGGGGAGATCAATTCAGGGGTTACCAAGGATGAGCAGACA
AATGTGGCACTCATGTACATCAAGGGCGCGGGGGAGTTAAGCTTCAAGTG
GAGGAGTTCGTGCGAGGAGACTTATGATGTGCTTTACATGTTTTTGAATA
ATGAGCCCGTGGATGCGTTGACCGGCGACTCGGGGTGGGTGACCAAGAGT
TTGCTGATCGAGGGAGGGGAGGAGGAGGTGCACACCGTGGCGTTTGCCTT
TGTGAAGGACAAGTCCATGGGGAAATATCAAGACAAGGCGTTTGTTAAGG
ACGTGCAGTTTGGAGCACGGGCACAGGCAGGAATGGAACGGTTCGTCCAG
GTCCCGACCGTGACTTCGAAGGCGGCGACGACGACGGTGAAGCCGTCCAA
GGGATGGAGTGCAGTGAGGGAGGCGGGTGATGTAGAAAGGAAGGGACGAG
GGTTGAGGGGGGCGGTAAAGGAGGAAAGGGAGTCGTCTTCGGCCTGA
back to top

Coding sequence (CDS) from alignment at chr13:185188..187234+

>NO13G00530.1 ID=NO13G00530.1|Name=NO13G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr13:185188..187234+ (Nannochloropsis oceanica)
ATGCGTCTCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCCTTTAT
GACCTCTGGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAAGGACA
ATCAGCCTCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAGTCCCC
TTCAACGCCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGTAACGA
GTCCAAGTGGACGGTGGCCCTGGTGACCAACACGCATGGCCGCCTCTTTC
AATTCTGCGGCGGCACTCTGGTTGCACCCAAATTCGTGGTCACCGCCGCG
CATTGTGTAGCCGCCGGCTACGAAATGTCTGCGATACTGGGACGGTATAC
CTTGTCAGATTCTACGCAGGGGGAGATGATCAAGGTGGCTGAAGCGTTCA
TGCACCCTGAGTACGACCCCAATACGATGACCGGGGACATTGCCATTTTG
AGGCTTGAAACTGCCGCCCCTGCTGATATTCCAATTTTGCCTCTAATCCC
CACGATGCAAGCGAAGGGGATGACGGAGGGGGAGATGGTGACGGTATTGG
GGTGGGGGTTGACGGAGGAGAGGGCGCAGAAGGAGCAGAAGGAGGCCCCC
CCTGTGCAGGGCTCCGGGACAGATGTCCTTCGCTCAGTCACCTTGCCGAT
TATAGGAAATAAAAAGTGTAATGCGGAATATCGGGCGTTGACGGGCAAAG
AATCGATCCTGGACGAGGAGGTCTGCGCGGGGGTGGATCGTGGGGGACTA
GACTCGTGCCAGGGGGATAGCGGAGGACCCTTGACAGCGACGGTAGGAGG
GACGACCTACCTGTTTGGTGTTGTTTCATGGGGCATTGGCTGTGCGAGGG
CCAAGGTGCCGGGAGTGTATACCCGAATTTCGGCGCATGCGGATTGGCTG
GCGAGCAAGATGCTTTTGGAGGTGGTAACGGACACCGGTCGGGGCCTGGG
CGCCGTTACAGTGTTGTTCGCTGGGGTGGGACGTGTCGCGACGCTGCCTC
TGCTGATCAATTCCTTAGCATCTGCTGCCTTGGATGTCTCTATTGGGTTT
GCCAAGAATGCGGCAAAAGGATTCAGTGTCGATACGTCCAAGCTTTCTCT
TGCGTCGGCTGGGAAGGTGGGTCAGGCCGTGGTGACTTACTCCTCGGACA
AGGCGCAGGTAGATACGACTTCGCTGATCCTGCAGGTAGCACAAGGAGGA
AAGCAGGCAGGTGAACAATCCTTTGGCTTGACTGCGTTCTCTTTGCCTGC
AGCGGATTTTGGGGTGGCTTTTGATGGGGATTGGTTCTCGGGAGCGGATA
GCGGGAGAAATGCGTGGGTCATGGATGGGGGGGAGATCAATTCAGGGGTT
ACCAAGGATGAGCAGACAAATGTGGCACTCATGTACATCAAGGGCGCGGG
GGAGTTAAGCTTCAAGTGGAGGAGTTCGTGCGAGGAGACTTATGATGTGC
TTTACATGTTTTTGAATAATGAGCCCGTGGATGCGTTGACCGGCGACTCG
GGGTGGGTGACCAAGAGTTTGCTGATCGAGGGAGGGGAGGAGGAGGTGCA
CACCGTGGCGTTTGCCTTTGTGAAGGACAAGTCCATGGGGAAATATCAAG
ACAAGGCGTTTGTTAAGGACGTGCAGTTTGGAGCACGGGCACAGGCAGGA
ATGGAACGGTTCGTCCAGGTCCCGACCGTGACTTCGAAGGCGGCGACGAC
GACGGTGAAGCCGTCCAAGGGATGGAGTGCAGTGAGGGAGGCGGGTGATG
TAGAAAGGAAGGGACGAGGGTTGAGGGGGGCGGTAAAGGAGGAAAGGGAG
TCGTCTTCGGCCTGA
back to top
Synonyms
Publications