NO13G00320.1, NO13G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00320.1
Unique NameNO13G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1011
Alignment locationchr13:108048..109523 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:108048..109523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00320.1 vs.
Match: EWM22872.1 (hypothetical protein Naga_100931g2 [Nannochloropsis gaditana])

HSP 1 Score: 178.7 bits (452), Expect = 1.500e-41
Identity = 111/177 (62.71%), Postives = 128/177 (72.32%), Query Frame = 0
Query:    2 VTAAFNVAAPLLRASCRRCTSSTSQITQRFLGSSP----ASGRAAAAHHGLEMTPATKRNNRLVALACLAFAGSVYTYSIRKLKEEDLNDLEEDITVVNLHESGLKATKFKGLLEESQ---KKEQEKEEEEEEMERQRERGVVPGVAMIANEGSSEGEGGKVGGKAGWKKWVFFWQK 172
            +T     AA +LR S RRCT+S  Q T R +  SP    ASGRA    H LE+TP  +R NR VALAC+ FAGSVYTYSIRKLKEEDL+DLEE++TVVNLHESGLKATKFK LLEES+     E  +E  EEEMERQ E+GVV GVAMIA E   EG  G+ GGK GWK+WVFFW++
Sbjct:   57 MTIVTTAAAAVLRLSRRRCTASLHQ-TMRHVRPSPFSTNASGRAHTPPHHLEVTPEVRRRNRFVALACVVFAGSVYTYSIRKLKEEDLSDLEEEVTVVNLHESGLKATKFKSLLEESRGDAAAEAAEEAVEEEMERQLEQGVVEGVAMIAEE---EGR-GEEGGKGGWKRWVFFWRR 228          
The following BLAST results are available for this feature:
BLAST of NO13G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22872.11.500e-4162.71hypothetical protein Naga_100931g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00320NO13G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00320.1NO13G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00320.1.cds1NO13G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00320.1.cds2NO13G00320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00320.1.cds3NO13G00320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00320.1 ID=NO13G00320.1|Name=NO13G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
CGGATGAGTAAATCGAAGAATACGAAGGCGGCGTGTAGTTCTGCAACCGA
CAGCAACGTCTTGAGCGAGCACGTGAACCAGTGGGTCGCCCTTATGCCAC
ACATTCCATAATACACCCGTGTTCCACACCCGCTGGCCTGCTGTGTGAAA
GTTTTGAAGTTTGCTTTACTCCTGACCCCTCCATCTCATTCCCACACCCA
CACAGGGACGCACACACAGCCACAACTCTGCCCTAGTCTCATCGCAAACC
TGCGTCATCGTCGTAGCCGCTCCATTTACCTACACTGCACAGCGCGATGG
TAACTGCTGCCTTCAATGTCGCCGCCCCGTTGCTTCGTGCCAGCTGCAGA
AGATGCACTTCTTCGACCAGCCAGATAACGCAGCGCTTTCTGGGTTCTTC
CCCTGCCAGCGGACGGGCCGCCGCCGCGCACCATGGCTTGGAAATGACCC
CCGCCACGAAGCGAAACAACCGGTTGGTGGCTCTAGCATGCCTGGCCTTT
GCCGGCTCTGTGTACACGTACTCAATTCGCAAGCTGAAGGAGGAGGATCT
GAACGATTTGGAGGAAGACATCACTGTGGTTAATTTACACGAGAGTGGCC
TCAAGGCGACTAAATTCAAGGGCCTGCTGGAAGAGAGCCAAAAGAAGGAG
CAGGAGAAGGAGGAGGAGGAGGAGGAGATGGAGCGCCAGAGGGAGAGGGG
GGTGGTGCCGGGTGTGGCAATGATAGCGAACGAGGGAAGCTCGGAAGGAG
AGGGGGGGAAGGTGGGAGGGAAGGCGGGCTGGAAGAAGTGGGTGTTTTTC
TGGCAGAAGTAAGCGCATGCAGAGTAGTGTGGACGGCTGAAAAGAGGGAG
AGAGGGAGGGAGGGAGGGAGGGGAGTAGTTTTTGCGTGGATAGTCCACAG
AGGAGAAGCAGAGAAAGAAAAGGCTTCCACGTCCTTTTTGTAAAGAAAAA
AAAGAAGTTCAAGAAGAAGAAGCAGCATCAGCAGCAGCAACCCCAAAAAG
AATGAGTAAGA
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protein sequence of NO13G00320.1

>NO13G00320.1-protein ID=NO13G00320.1-protein|Name=NO13G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MVTAAFNVAAPLLRASCRRCTSSTSQITQRFLGSSPASGRAAAAHHGLEM
TPATKRNNRLVALACLAFAGSVYTYSIRKLKEEDLNDLEEDITVVNLHES
GLKATKFKGLLEESQKKEQEKEEEEEEMERQRERGVVPGVAMIANEGSSE
GEGGKVGGKAGWKKWVFFWQK*
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mRNA from alignment at chr13:108048..109523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00320.1 ID=NO13G00320.1|Name=NO13G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp|location=Sequence derived from alignment at chr13:108048..109523- (Nannochloropsis oceanica)
CGGATGAGTAAATCGAAGAATACGAAGGCGGCGTGTAGTTCTGCAACCGA CAGCAACGTCTTGAGCGAGCACGTGAACCAGTGGGTCGCCCTTATGCCAC ACATTCCATAATACACCCGTGTTCCACACCCGCTGGCCTGCTGTGTGAAA GTTTTGAAGTTTGCTTTACTCCTGACCCCTCCATCTCATTCCCACACCCA CACAGGGACGCACACACAGCCACAACTCTGCCCTAGTCTCATCGCAAACC TGCGTCATCGTCGTAGCCGCTCCATTTACCTACACTGCACAGCGCGATGG TAACTGCTGCCTTCAATGTCGCCGCCCCGTTGCTTCGTGCCAGCTGCAGA AGATGCACTTCTTCGACCAGCCAGATAACGCAGCGCTTTCTGGGTTCTTC CCCTGCCAGCGGACGGGTACGCATCAGGACCCTCTTCCCTCCCTCCCTCT TTCCCACCCTCCCTCCCTGCTCTTGTTCGACAATCACCGTATGTGCGTCC ATCTAAACTCCTTACATCTCTATCTCTTCGCATCCCTGCCAACGTATCCG GCGATTTCTATCTGCCTGTGCGACCGTTGTGTCGATCACCTCAATCCTAT GTGATCATGCCCTCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC TATTCCTCTTTTATCAGGCCGCCGCCGCGCACCATGGCTTGGAAATGACC CCCGCCACGAAGCGAAACAACCGGTTGGTGGCTCTAGCATGCCTGGCCTT TGCCGGCTCTGTGTACACGTACTCAATTCGCAAGCTGAAGGAGGTGAGGG AGGGAGGGAGGGAGGGAGGGAGGAAAGGGAGGGCGGGATCTAGGTTGGGA AGCATAAATTCACTGTCTCGTGTTGTTCCTGTTCTTTTCTCTATCCCCGG TGGTATTGTCCCTTCTCTAATGCTATCACCGCCCCGCTGTCCCTCACACA CCTCTCCCCATCCTCCTCCCTCCCTCCCTCTCTCCCTCCCACCCTCCTCT CCCACAGGAGGATCTGAACGATTTGGAGGAAGACATCACTGTGGTTAATT TACACGAGAGTGGCCTCAAGGCGACTAAATTCAAGGGCCTGCTGGAAGAG AGCCAAAAGAAGGAGCAGGAGAAGGAGGAGGAGGAGGAGGAGATGGAGCG CCAGAGGGAGAGGGGGGTGGTGCCGGGTGTGGCAATGATAGCGAACGAGG GAAGCTCGGAAGGAGAGGGGGGGAAGGTGGGAGGGAAGGCGGGCTGGAAG AAGTGGGTGTTTTTCTGGCAGAAGTAAGCGCATGCAGAGTAGTGTGGACG GCTGAAAAGAGGGAGAGAGGGAGGGAGGGAGGGAGGGGAGTAGTTTTTGC GTGGATAGTCCACAGAGGAGAAGCAGAGAAAGAAAAGGCTTCCACGTCCT TTTTGTAAAGAAAAAAAAGAAGTTCAAGAAGAAGAAGCAGCATCAGCAGC AGCAACCCCAAAAAGAATGAGTAAGA
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Coding sequence (CDS) from alignment at chr13:108048..109523-

>NO13G00320.1 ID=NO13G00320.1|Name=NO13G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr13:108048..109523- (Nannochloropsis oceanica)
ATGGTAACTGCTGCCTTCAATGTCGCCGCCCCGTTGCTTCGTGCCAGCTG
CAGAAGATGCACTTCTTCGACCAGCCAGATAACGCAGCGCTTTCTGGGTT
CTTCCCCTGCCAGCGGACGGGCCGCCGCCGCGCACCATGGCTTGGAAATG
ACCCCCGCCACGAAGCGAAACAACCGGTTGGTGGCTCTAGCATGCCTGGC
CTTTGCCGGCTCTGTGTACACGTACTCAATTCGCAAGCTGAAGGAGGAGG
ATCTGAACGATTTGGAGGAAGACATCACTGTGGTTAATTTACACGAGAGT
GGCCTCAAGGCGACTAAATTCAAGGGCCTGCTGGAAGAGAGCCAAAAGAA
GGAGCAGGAGAAGGAGGAGGAGGAGGAGGAGATGGAGCGCCAGAGGGAGA
GGGGGGTGGTGCCGGGTGTGGCAATGATAGCGAACGAGGGAAGCTCGGAA
GGAGAGGGGGGGAAGGTGGGAGGGAAGGCGGGCTGGAAGAAGTGGGTGTT
TTTCTGGCAGAAGTAA
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Synonyms
Publications