NO13G00280.1, NO13G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00280.1
Unique NameNO13G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1646
Alignment locationchr13:100804..103221 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:100804..103221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00280.1 vs.
Match: XP_005854660.1 (ubiquitin thioesterase otub1 [Nannochloropsis gaditana CCMP526]; EKU21705.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana CCMP526]; EWM22878.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana]; EWM22879.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana])

HSP 1 Score: 371.7 bits (953), Expect = 2.500e-99
Identity = 191/290 (65.86%), Postives = 223/290 (76.90%), Query Frame = 0 
Query:   79 AVDAESNGHDDLHPAMLNQQDDAAVAEQDRLTMAQQEEIESQIAATQPLVGALEPPSVLLPDYKDNPAKGFVAGVEDLAQRYRMMRRVRGDGNCFYRAFLFAYLAGLVEGGV----------GEGGK-----KKKEWDKLAKTVKDSKGWLVEVGFEEVAIDMFWEVFVEELEELPQKTLADLEATFNDPHGVASYMVWYCRLLTAGFLKKHREEYEAFLDGRYTDMNDFCAREVEPVGKECEELQIVALMRVLDAQVHIEYLDGRPLPDGGHLPVHVLPE--GGGREGG 352
            A D   NG      A  N Q +    ++D LT+AQQEEI+SQIAA+QPLVG LEPPS+LL  YKDNP KGFV GVEDLA+RY  MRR+R DGNCFYRAFLFAYLAGLVE G+          G GGK     +KKEW++ ++TVKDSK WL+ VG+EEVAID+FWEVFVEELE LP K+L+DLE+TFN+PHGVASYMVWYCRLLT+G+LKKH+EEYEAFLD  Y DM+DFC REVEP GKECE++QI+AL+R L   V IEYLDGR LP GG LP HVLP+   GG+E G
Sbjct:   13 AEDVHENGLSQSQAAGHNHQVEE---DRDLLTIAQQEEIDSQIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRDGNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERFSQTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPHGVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKECEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEG 299
The following BLAST results are available for this feature:
BLAST of NO13G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854660.12.500e-9965.86ubiquitin thioesterase otub1 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00280NO13G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00280.1NO13G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00280.1.cds1NO13G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00280.1.cds2NO13G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00280.1.cds3NO13G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp
GTATGGGGAGGATCTTGCTCGACCTGGCGGCAGGGCTAGAAAGCCTCGTC
CTTGATTTTCTTGCTAACGTCATGAGACACACATAAAGGTGGCTGATGTT
GCCGTTCGCGGGTGGACATTAAAAGGAGACGGGAAGCACGCAACACAAAA
AAGGCGTGCGGTAAAAATCATGCGTGAGGTGTCACAGACGTGAGTTCTTG
CAGCCCCATGAATTGCGGCTCATTAAAAATGTACCATGCCACGAAATACT
CTTCTTTCAGGCGTGGCTTTCCTCTCATTGCAACCAAGCCATGTCCGTGT
CTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTTGAGCTTGATG
TTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATTATTCTTCCTT
TAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAATAAGCACATAG
AAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCCTCAATCCACC
AGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGAGCAATGGCCA
CGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGACGCTGCCGTGG
CGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGATAGAAAGTCAA
ATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCACCATCCGTCTT
GCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTAGCGGGCGTGG
AGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCGCGGGGATGGG
AACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTGGGCTGGTGGA
GGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGGGATAAGCTGG
CCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGTGGGGTTTGAG
GAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAGAGCTGGAAGA
GCTTCCCCAAAAGACACTCGCCGATCTGGAGGCGACATTTAACGACCCTC
ACGGCGTGGCATCTTACATGGTCTGGTACTGCCGTCTCTTGACCGCAGGC
TTTCTGAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGGATGGCCGCTA
CACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCCGTAGGGAAGG
AGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTTGGACGCCCAG
GTCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATGGAGGGCATTT
GCCTGTGCATGTCCTGCCGGAGGGAGGGGGGAGGGAGGGGGGGAGGGAGG
GGGGGTAACGCTGTTGTACCGCCCAGGACATTATGACGTGTTGTCGGCGT
GAGAAGACCGAGTGGGGACCGCGGGCTTGTCCCGAGTCGAAGCCGAGGTA
GGAGGGGGCTAAGATGTGTGTGTAGAGAGGGGGGGGATGATTATGACGAG
ACGATGCGCAGGCGTAGACAGAGGAGTACAGGCGGAGCATGTGATAAAGG
CATGCAGTGCCCCCAGCAAATCCCCCGCCGGGCCGTGAACAAATCCGTGG
TAATAGAGGAAGCACCAAAGCATAAGCACCTTCGATTCGATACTGA
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protein sequence of NO13G00280.1

>NO13G00280.1-protein ID=NO13G00280.1-protein|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MSVSSCLRGACASVSCLSLMFNAARVAHRRSGHYSSFRNALTTSIPHTLN
KHIENSGRAASMGGEVPQSTRPTTTPSTAVDAESNGHDDLHPAMLNQQDD
AAVAEQDRLTMAQQEEIESQIAATQPLVGALEPPSVLLPDYKDNPAKGFV
AGVEDLAQRYRMMRRVRGDGNCFYRAFLFAYLAGLVEGGVGEGGKKKKEW
DKLAKTVKDSKGWLVEVGFEEVAIDMFWEVFVEELEELPQKTLADLEATF
NDPHGVASYMVWYCRLLTAGFLKKHREEYEAFLDGRYTDMNDFCAREVEP
VGKECEELQIVALMRVLDAQVHIEYLDGRPLPDGGHLPVHVLPEGGGREG
GREGG*
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mRNA from alignment at chr13:100804..103221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at chr13:100804..103221- (Nannochloropsis oceanica)
GTATGGGGAGGATCTTGCTCGACCTGGCGGCAGGGCTAGAAAGCCTCGTC
CTTGATTTTCTTGCTAACGTCATGAGACACACATAAAGGTGGCTGATGTT
GCCGTTCGCGGGTGGACATTAAAAGGAGACGGGAAGCACGCAACACAAAA
AAGGCGTGCGGTAAAAATCATGCGTGAGGTGTCACAGACGTGAGTTCTTG
CAGCCCCATGAATTGCGGCTCATTAAAAATGTACCATGCCACGAAATACT
CTTCTTTCAGGCGTGGCTTTCCTCTCATTGCAACCAAGCCATGTCCGTGT
CTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTTGAGCTTGATG
TTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATTATTCTTCCTT
TAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAATAAGCACATAG
AAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCCTCAATCCACC
AGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGAGCAATGGCCA
CGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGACGCTGCCGTGG
CGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGATAGAAAGTCAA
ATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCACCATCCGTCTT
GCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTAGCGGGCGTGG
AGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCGCGGGGATGGG
AACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTGGGCTGGTGGA
GGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGGGATAAGCTGG
CCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGTGGGGTTTGAG
GAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAGAGGTAAGATG
GGGAAAGGAGTTTGAAACTCCCAACCAATAAGCAACCCACCACCCACTCA
CACACGGGTATACCCCTCCCCTCGTTCCTCCCCACTCCCTCCCTCCTCTC
CTCCCTCCTCCTCTCCCTCCTTCCACCCCTCCTTCAGCTGGAAGAGCTTC
CCCAAAAGACACTCGCCGATCTGGAGGCGACATTTAACGACCCTCACGGC
GTGGCATCTTACATGGTCTGGTACTGCCGTCTCTTGACCGCAGGCTTTCT
GAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGGATGGCCGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAAGAGCAAGGCATATCACCG
GTTCTCAGAAGCGTCGACTTGGTGAGAGGTAGAGAGAGACTGAAGAGGGT
AGGTGTACGACGTAAGGAGAGGATGTGAGCCAATTGCGTTACCGTGTACA
AGCTCTTACCACTTTAGACACCTACCTCTCTGTCTCTCTCTGTCTCTCTC
TATCTGTCTGTCTCTTTCTCTGTCTCTGTCCCTCTTTTATCTCCCTCTCT
CTGTCTATCTCTGTCCCTCTTTTTATCTTCCTCTCTGTCTCTCCCTGTCT
CTCCCTGTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTATGTCTTTGTCT
CTGTCTCTCTTTTTATCTCCCTCTCTCTGTCTCTCTTTTAATCTCCCTCT
CTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTTTTTATCT
CTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTTTTC
ATCTCTCTCTCTTTTCATCTCTCTCTCATTTTCTCATCTCTCTCTCTCTT
CATCTCCCTCTTCCTCTCTCTCTCTGTCTCTGTCTCTATCTCTCTCTCTT
CCTCACTCTCTCTTCACAGCTACACCGACATGAACGACTTCTGCGCCCGG
GAAGTAGAGCCCGTAGGGAAGGAGTGCGAGGAACTGCAGATAGTGGCCTT
GATGCGCGTTTTGGACGCCCAGGTCCATATCGAATACCTGGACGGGAGGC
CTCTGCCGGATGGAGGGCATTTGCCTGTGCATGTCCTGCCGGAGGGAGGG
GGGAGGGAGGGGGGGAGGGAGGGGGGGTAACGCTGTTGTACCGCCCAGGA
CATTATGACGTGTTGTCGGCGTGAGAAGACCGAGTGGGGACCGCGGGCTT
GTCCCGAGTCGAAGCCGAGGTAGGAGGGGGCTAAGATGTGTGTGTAGAGA
GGGGGGGGATGATTATGACGAGACGATGCGCAGGCGTAGACAGAGGAGTA
CAGGCGGAGCATGTGATAAAGGCATGCAGTGCCCCCAGCAAATCCCCCGC
CGGGCCGTGAACAAATCCGTGGTAATAGAGGAAGCACCAAAGCATAAGCA
CCTTCGATTCGATACTGA
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Coding sequence (CDS) from alignment at chr13:100804..103221-

>NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr13:100804..103221- (Nannochloropsis oceanica)
ATGTCCGTGTCTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTT
GAGCTTGATGTTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATT
ATTCTTCCTTTAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAAT
AAGCACATAGAAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCC
TCAATCCACCAGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGA
GCAATGGCCACGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGAC
GCTGCCGTGGCGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGAT
AGAAAGTCAAATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCAC
CATCCGTCTTGCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTA
GCGGGCGTGGAGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCG
CGGGGATGGGAACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTG
GGCTGGTGGAGGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGG
GATAAGCTGGCCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGT
GGGGTTTGAGGAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAG
AGCTGGAAGAGCTTCCCCAAAAGACACTCGCCGATCTGGAGGCGACATTT
AACGACCCTCACGGCGTGGCATCTTACATGGTCTGGTACTGCCGTCTCTT
GACCGCAGGCTTTCTGAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGG
ATGGCCGCTACACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCC
GTAGGGAAGGAGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTT
GGACGCCCAGGTCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATG
GAGGGCATTTGCCTGTGCATGTCCTGCCGGAGGGAGGGGGGAGGGAGGGG
GGGAGGGAGGGGGGGTAA
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Synonyms
Publications