NO13G00240.1, NO13G00240.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00240.1
Unique Name	NO13G00240.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2944
Alignment location	chr13:87851..90794 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:87851..90794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G00240.1 vs.
Match: EWM22840.1 (hypothetical protein Naga_100295g4 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 2.100e-56
Identity = 149/354 (42.09%), Postives = 196/354 (55.37%), Query Frame = 0

Query:  283 ATAAVVAAQRQQQRVTALREAERDRERLPHHLPL-------PMSSYSVPASTASSFSSS-STMAPSRLPPPKTQARNPPQAEVKSAIRRHLALGPFTSGLEWTMLACMGTAFMSIASMCAESAGFFVGYNDISFPVVGSVNLIDVNIGWNRFSIDLNGAGIIATRSLESISQSAYILGCVTFVLHLLCVGLSLATLGYIYNLRTYGRLSPLGGAYTHTRWLSGLQILLGLGLAGVGCMAFPWYVQKGFTDTF--TPEMDAFHSKVGWAYALTLAVALLCLITGFRLLMGATKMDSIIAWGAGRMREGRRLGDIGRDREERKEEIPMRRPSWNDAGHGRHPP-----PPRPAFLS 622
            AT AV A   +  R            + P  LPL       P +S   P+S ASS S + S   P R P            +   A+RRHLALGPFTSGLEWTMLA + T  +S A + AE  GFF+G+ND  +   G +NLID++IGWNRFS+D+NG  ++  R L SIS+ AY+LGC+TF  HLL V LS   + +++ +R+ GR+SPL GA+ HTR +SG  I L L LAGV C+ F + V + F   F   P+M+ F  K GWAY LT+ V+ LCL+ G RL + A  MD ++A  A           IG + E+      +R+P      H   PP     PPRPAFLS
Sbjct:    7 ATTAVRALPPRGGRAEGGSNRPGPLGKRPPALPLASPPLLSPATSSVPPSSMASSLSCTPSASLPPRRPDVHRSISGYAHVDAGRALRRHLALGPFTSGLEWTMLAGVATGLLSAACVVAEKHGFFMGFNDFEYTTAGDLNLIDLSIGWNRFSMDVNGMAVVTLRPLSSISRMAYLLGCLTFAGHLLSVCLSAILVSFLHQVRSQGRISPLAGAFVHTRLISGCLIFLSLFLAGVSCIEFRYVVLRDFNAEFRDAPQMEGFRIKPGWAYFLTVTVSALCLLMGGRLGINAGMMDKVLAHAAA----------IGTETED-----SLRKPKRGQVHHFAGPPARSQRPPRPAFLS 345

The following BLAST results are available for this feature:

BLAST of NO13G00240.1 vs.

BLAST of NO13G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22840.1	2.100e-56	42.09	hypothetical protein Naga_100295g4 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00240	NO13G00240	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00240.1	NO13G00240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00240.1.cds1	NO13G00240.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:87851..90794-
coding sequence from alignment at chr13:87851..90794-

mRNA sequence

>NO13G00240.1 ID=NO13G00240.1|Name=NO13G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2944bp
CCGCCTGTCCATATGGGGGTAGCCTGCCCGGGGCAGGTTCGTGAGGGAGG
TTTTGCCAGAAGTAGGCCGTCAAAAGGACATGGTCTTATTGTATGCATTC
CTAACCCCTTGAAAGGTCACACTCTGTTCATGGTGGTCACAGAGAGGCTG
CAGCGGTGGAAATATACGCGCATCGAATGTGTCGAGTGGGCTGTTGCAAA
ACCCTGGCAGAGTCCTCCGTCTGCCTTCCTTCTCTTGCAAGTTGCTTCTG
TGATGCTCTGACCACCTGGACATATTTTCATCTGCACTCACAGGCTCACT
TTTTAAACTTTTCAACCAACAAACAGGCGCATCAAGAACTTAAGGCGTAC
CTGCAGCACCATTTCACCACTTTTCGCATCGCGCCTTCTCCTCCTCGCCC
CTCCTCCTCATCCTTTAACACTAAATGCGGAGCACTCCGTCCTTTAACTC
TCCGCCATCTTATGGACACGATAAAGGGCATCACCATCACCCAAAGCCTC
ATCCTCCTCCAATACTGGTTAAAGACAACGATGGCAGCTTTAGCTTAGAC
GGTTCCGAGCTGATAACTCCGCGCACCCAGAAGCGCGTGACGCTCAATGA
CACGCCTATTATCAGCGGACCCGCTTATGCCTTTTTCGCCTCGCCCTCCC
CTCGCCACGAGCCTCCCATGATGAGGCCTGGCTCTTCCTACACGCCTGTT
CCGCCACCCCCCCCAACGCTGCGCCATCACGAAAAGGAAGTCAAAAGCCA
CCGCCGCCCAACATTACCCTCCTCTCTGTAAGCTGGAACCAAAAGAAAGC
TCCACCACACACCATGCCTCCTCAACCCACCTCTCATCCTTCTCCTTCTG
TACCTCCTCGTCGCCCTTCCCGGTATAATATTCCTTCCGTCCAACCTTCT
CCTCGCTCTGCCCTGAAGAAGACGCCTTCCAACTTCTCGCAACACCCCTC
TGCTCAAGCCGTCATGAATAGCGCTCCCATCTCCGCGCCCTCCTACCCTC
CCCCAGGCTCTTCGTCCCTCCCTCCCGCACACAGCACAAGAATATGGGAG
GGCGGAAGCAGCAGCAGTTACCACAAGACCAGTGTCACGGCTGCTGGTGG
GGGTGGGAGCAGTCGACATGGACGCATCGTCTCGCCGAGTACCACGAAAC
CCGTGCCCAGTTCTGCACCTGTGCTGGCGCCGCTACACGAAGGGAATGAA
GGGGAGGAGGACAGTGAATTCGGGAGCAGCGATGGTGGGACGGAGGAGGA
GGAAGAGGGGGTTCAAATGGCTTCGAGACGCTCTTCTATCCCACCACGAC
GCTCCCAACAACAACCCACCCAGCATGCCGCAGTGTTGCCCCCTCGCTCC
TCTTTGCCACCCCGTTCGCAATTTACTGACTCCCCATCGTCCTTGTCCTC
CTCGCCATTACCATCGTGGGTACGGCCCACGGGCCAGCCGCAGAGGCCCC
CGCAGGAACACTTACGGCAACTTGAGAGACTGCCTTCTGGGGTTGAGGCG
GGGGAGAGGGCGGGAAGGAGGACAGGGTGGCAGCAGGACAAAGTAGAGGA
AGCCCCCGACTCGAAGAATGTGCAGGGAGGGCACCACAAGTTAGAGGAGG
TAAACCGCGAAGCCCCTTCTCATCCCAACAGCATCGGCGGTGCTCCGTCT
CTGGCGGCAGCTACTGCAGCTGTGGTGGCGGCCCAGCGCCAGCAGCAACG
CGTAACAGCATTACGAGAAGCCGAACGCGACCGAGAGCGATTGCCTCATC
ACCTTCCCTTGCCCATGTCCTCCTACTCAGTGCCCGCCTCCACCGCTTCC
TCGTTTTCCTCCTCCTCCACCATGGCCCCCTCTCGTCTCCCCCCCCCCAA
AACGCAAGCCCGCAACCCACCGCAAGCCGAGGTGAAGAGTGCTATACGGC
GACACCTGGCACTCGGGCCCTTTACCTCTGGTCTGGAGTGGACTATGCTG
GCCTGCATGGGCACTGCCTTCATGTCCATAGCGTCCATGTGCGCCGAGAG
CGCTGGCTTCTTCGTGGGCTACAATGACATTTCCTTCCCTGTCGTAGGCA
GCGTCAATCTGATCGATGTGAACATCGGCTGGAACCGGTTTTCAATCGAC
CTGAATGGGGCTGGTATCATTGCGACCCGCTCTCTCGAGAGCATTTCCCA
GTCCGCCTACATCCTTGGCTGCGTCACCTTCGTCTTGCACCTCCTCTGTG
TTGGACTCTCCCTCGCGACCCTGGGCTATATCTACAACCTGCGGACGTAC
GGTCGCCTGTCGCCATTGGGAGGGGCCTACACACACACACGCTGGCTTTC
CGGGCTGCAAATACTGCTAGGCTTGGGCCTGGCGGGCGTGGGCTGCATGG
CATTCCCGTGGTATGTCCAAAAAGGGTTCACGGACACATTTACGCCCGAG
ATGGATGCTTTCCACAGTAAAGTTGGATGGGCATATGCGCTGACGCTGGC
AGTTGCGCTCTTGTGTCTGATCACAGGTTTTAGGCTGCTGATGGGCGCCA
CGAAGATGGACTCCATCATTGCATGGGGGGCGGGCAGGATGAGGGAAGGG
AGGAGGTTGGGGGACATTGGCAGGGACAGGGAGGAGAGGAAGGAGGAGAT
ACCGATGAGAAGGCCATCGTGGAATGATGCAGGGCATGGGCGCCATCCGC
CTCCGCCTCGGCCTGCGTTCTTGTCGTCTGTATGAAGAAATAGAAATAGA
AAAAAAACTAATTGTAATATCACTTTGAAAGCATATCAGTCGTGTGGGTA
GGGTAGGCACCAGCGTATGGGGTGGATGTGATGGGAGCAGTCCACCACTG
TCGAGTTTTAAAAGTTCACCGAACGCAAGAAAGTGTGTGGGCGTAAAGGA
AATAATGGCTCATCAAGGCTTTGTATCTCTATTTGTATGTGTATACTTTG
GTTCTCGCATAACAAAAAGAAAAAATGAATGCGACTAAATTGAA

protein sequence of NO13G00240.1

>NO13G00240.1-protein ID=NO13G00240.1-protein|Name=NO13G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MPPQPTSHPSPSVPPRRPSRYNIPSVQPSPRSALKKTPSNFSQHPSAQAV
MNSAPISAPSYPPPGSSSLPPAHSTRIWEGGSSSSYHKTSVTAAGGGGSS
RHGRIVSPSTTKPVPSSAPVLAPLHEGNEGEEDSEFGSSDGGTEEEEEGV
QMASRRSSIPPRRSQQQPTQHAAVLPPRSSLPPRSQFTDSPSSLSSSPLP
SWVRPTGQPQRPPQEHLRQLERLPSGVEAGERAGRRTGWQQDKVEEAPDS
KNVQGGHHKLEEVNREAPSHPNSIGGAPSLAAATAAVVAAQRQQQRVTAL
REAERDRERLPHHLPLPMSSYSVPASTASSFSSSSTMAPSRLPPPKTQAR
NPPQAEVKSAIRRHLALGPFTSGLEWTMLACMGTAFMSIASMCAESAGFF
VGYNDISFPVVGSVNLIDVNIGWNRFSIDLNGAGIIATRSLESISQSAYI
LGCVTFVLHLLCVGLSLATLGYIYNLRTYGRLSPLGGAYTHTRWLSGLQI
LLGLGLAGVGCMAFPWYVQKGFTDTFTPEMDAFHSKVGWAYALTLAVALL
CLITGFRLLMGATKMDSIIAWGAGRMREGRRLGDIGRDREERKEEIPMRR
PSWNDAGHGRHPPPPRPAFLSSV*

mRNA from alignment at chr13:87851..90794-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00240.1 ID=NO13G00240.1|Name=NO13G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2944bp|location=Sequence derived from alignment at chr13:87851..90794- (Nannochloropsis oceanica)
CCGCCTGTCCATATGGGGGTAGCCTGCCCGGGGCAGGTTCGTGAGGGAGG
TTTTGCCAGAAGTAGGCCGTCAAAAGGACATGGTCTTATTGTATGCATTC
CTAACCCCTTGAAAGGTCACACTCTGTTCATGGTGGTCACAGAGAGGCTG
CAGCGGTGGAAATATACGCGCATCGAATGTGTCGAGTGGGCTGTTGCAAA
ACCCTGGCAGAGTCCTCCGTCTGCCTTCCTTCTCTTGCAAGTTGCTTCTG
TGATGCTCTGACCACCTGGACATATTTTCATCTGCACTCACAGGCTCACT
TTTTAAACTTTTCAACCAACAAACAGGCGCATCAAGAACTTAAGGCGTAC
CTGCAGCACCATTTCACCACTTTTCGCATCGCGCCTTCTCCTCCTCGCCC
CTCCTCCTCATCCTTTAACACTAAATGCGGAGCACTCCGTCCTTTAACTC
TCCGCCATCTTATGGACACGATAAAGGGCATCACCATCACCCAAAGCCTC
ATCCTCCTCCAATACTGGTTAAAGACAACGATGGCAGCTTTAGCTTAGAC
GGTTCCGAGCTGATAACTCCGCGCACCCAGAAGCGCGTGACGCTCAATGA
CACGCCTATTATCAGCGGACCCGCTTATGCCTTTTTCGCCTCGCCCTCCC
CTCGCCACGAGCCTCCCATGATGAGGCCTGGCTCTTCCTACACGCCTGTT
CCGCCACCCCCCCCAACGCTGCGCCATCACGAAAAGGAAGTCAAAAGCCA
CCGCCGCCCAACATTACCCTCCTCTCTGTAAGCTGGAACCAAAAGAAAGC
TCCACCACACACCATGCCTCCTCAACCCACCTCTCATCCTTCTCCTTCTG
TACCTCCTCGTCGCCCTTCCCGGTATAATATTCCTTCCGTCCAACCTTCT
CCTCGCTCTGCCCTGAAGAAGACGCCTTCCAACTTCTCGCAACACCCCTC
TGCTCAAGCCGTCATGAATAGCGCTCCCATCTCCGCGCCCTCCTACCCTC
CCCCAGGCTCTTCGTCCCTCCCTCCCGCACACAGCACAAGAATATGGGAG
GGCGGAAGCAGCAGCAGTTACCACAAGACCAGTGTCACGGCTGCTGGTGG
GGGTGGGAGCAGTCGACATGGACGCATCGTCTCGCCGAGTACCACGAAAC
CCGTGCCCAGTTCTGCACCTGTGCTGGCGCCGCTACACGAAGGGAATGAA
GGGGAGGAGGACAGTGAATTCGGGAGCAGCGATGGTGGGACGGAGGAGGA
GGAAGAGGGGGTTCAAATGGCTTCGAGACGCTCTTCTATCCCACCACGAC
GCTCCCAACAACAACCCACCCAGCATGCCGCAGTGTTGCCCCCTCGCTCC
TCTTTGCCACCCCGTTCGCAATTTACTGACTCCCCATCGTCCTTGTCCTC
CTCGCCATTACCATCGTGGGTACGGCCCACGGGCCAGCCGCAGAGGCCCC
CGCAGGAACACTTACGGCAACTTGAGAGACTGCCTTCTGGGGTTGAGGCG
GGGGAGAGGGCGGGAAGGAGGACAGGGTGGCAGCAGGACAAAGTAGAGGA
AGCCCCCGACTCGAAGAATGTGCAGGGAGGGCACCACAAGTTAGAGGAGG
TAAACCGCGAAGCCCCTTCTCATCCCAACAGCATCGGCGGTGCTCCGTCT
CTGGCGGCAGCTACTGCAGCTGTGGTGGCGGCCCAGCGCCAGCAGCAACG
CGTAACAGCATTACGAGAAGCCGAACGCGACCGAGAGCGATTGCCTCATC
ACCTTCCCTTGCCCATGTCCTCCTACTCAGTGCCCGCCTCCACCGCTTCC
TCGTTTTCCTCCTCCTCCACCATGGCCCCCTCTCGTCTCCCCCCCCCCAA
AACGCAAGCCCGCAACCCACCGCAAGCCGAGGTGAAGAGTGCTATACGGC
GACACCTGGCACTCGGGCCCTTTACCTCTGGTCTGGAGTGGACTATGCTG
GCCTGCATGGGCACTGCCTTCATGTCCATAGCGTCCATGTGCGCCGAGAG
CGCTGGCTTCTTCGTGGGCTACAATGACATTTCCTTCCCTGTCGTAGGCA
GCGTCAATCTGATCGATGTGAACATCGGCTGGAACCGGTTTTCAATCGAC
CTGAATGGGGCTGGTATCATTGCGACCCGCTCTCTCGAGAGCATTTCCCA
GTCCGCCTACATCCTTGGCTGCGTCACCTTCGTCTTGCACCTCCTCTGTG
TTGGACTCTCCCTCGCGACCCTGGGCTATATCTACAACCTGCGGACGTAC
GGTCGCCTGTCGCCATTGGGAGGGGCCTACACACACACACGCTGGCTTTC
CGGGCTGCAAATACTGCTAGGCTTGGGCCTGGCGGGCGTGGGCTGCATGG
CATTCCCGTGGTATGTCCAAAAAGGGTTCACGGACACATTTACGCCCGAG
ATGGATGCTTTCCACAGTAAAGTTGGATGGGCATATGCGCTGACGCTGGC
AGTTGCGCTCTTGTGTCTGATCACAGGTTTTAGGCTGCTGATGGGCGCCA
CGAAGATGGACTCCATCATTGCATGGGGGGCGGGCAGGATGAGGGAAGGG
AGGAGGTTGGGGGACATTGGCAGGGACAGGGAGGAGAGGAAGGAGGAGAT
ACCGATGAGAAGGCCATCGTGGAATGATGCAGGGCATGGGCGCCATCCGC
CTCCGCCTCGGCCTGCGTTCTTGTCGTCTGTATGAAGAAATAGAAATAGA
AAAAAAACTAATTGTAATATCACTTTGAAAGCATATCAGTCGTGTGGGTA
GGGTAGGCACCAGCGTATGGGGTGGATGTGATGGGAGCAGTCCACCACTG
TCGAGTTTTAAAAGTTCACCGAACGCAAGAAAGTGTGTGGGCGTAAAGGA
AATAATGGCTCATCAAGGCTTTGTATCTCTATTTGTATGTGTATACTTTG
GTTCTCGCATAACAAAAAGAAAAAATGAATGCGACTAAATTGAA

Coding sequence (CDS) from alignment at chr13:87851..90794-

>NO13G00240.1 ID=NO13G00240.1|Name=NO13G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr13:87851..90794- (Nannochloropsis oceanica)
ATGCCTCCTCAACCCACCTCTCATCCTTCTCCTTCTGTACCTCCTCGTCG
CCCTTCCCGGTATAATATTCCTTCCGTCCAACCTTCTCCTCGCTCTGCCC
TGAAGAAGACGCCTTCCAACTTCTCGCAACACCCCTCTGCTCAAGCCGTC
ATGAATAGCGCTCCCATCTCCGCGCCCTCCTACCCTCCCCCAGGCTCTTC
GTCCCTCCCTCCCGCACACAGCACAAGAATATGGGAGGGCGGAAGCAGCA
GCAGTTACCACAAGACCAGTGTCACGGCTGCTGGTGGGGGTGGGAGCAGT
CGACATGGACGCATCGTCTCGCCGAGTACCACGAAACCCGTGCCCAGTTC
TGCACCTGTGCTGGCGCCGCTACACGAAGGGAATGAAGGGGAGGAGGACA
GTGAATTCGGGAGCAGCGATGGTGGGACGGAGGAGGAGGAAGAGGGGGTT
CAAATGGCTTCGAGACGCTCTTCTATCCCACCACGACGCTCCCAACAACA
ACCCACCCAGCATGCCGCAGTGTTGCCCCCTCGCTCCTCTTTGCCACCCC
GTTCGCAATTTACTGACTCCCCATCGTCCTTGTCCTCCTCGCCATTACCA
TCGTGGGTACGGCCCACGGGCCAGCCGCAGAGGCCCCCGCAGGAACACTT
ACGGCAACTTGAGAGACTGCCTTCTGGGGTTGAGGCGGGGGAGAGGGCGG
GAAGGAGGACAGGGTGGCAGCAGGACAAAGTAGAGGAAGCCCCCGACTCG
AAGAATGTGCAGGGAGGGCACCACAAGTTAGAGGAGGTAAACCGCGAAGC
CCCTTCTCATCCCAACAGCATCGGCGGTGCTCCGTCTCTGGCGGCAGCTA
CTGCAGCTGTGGTGGCGGCCCAGCGCCAGCAGCAACGCGTAACAGCATTA
CGAGAAGCCGAACGCGACCGAGAGCGATTGCCTCATCACCTTCCCTTGCC
CATGTCCTCCTACTCAGTGCCCGCCTCCACCGCTTCCTCGTTTTCCTCCT
CCTCCACCATGGCCCCCTCTCGTCTCCCCCCCCCCAAAACGCAAGCCCGC
AACCCACCGCAAGCCGAGGTGAAGAGTGCTATACGGCGACACCTGGCACT
CGGGCCCTTTACCTCTGGTCTGGAGTGGACTATGCTGGCCTGCATGGGCA
CTGCCTTCATGTCCATAGCGTCCATGTGCGCCGAGAGCGCTGGCTTCTTC
GTGGGCTACAATGACATTTCCTTCCCTGTCGTAGGCAGCGTCAATCTGAT
CGATGTGAACATCGGCTGGAACCGGTTTTCAATCGACCTGAATGGGGCTG
GTATCATTGCGACCCGCTCTCTCGAGAGCATTTCCCAGTCCGCCTACATC
CTTGGCTGCGTCACCTTCGTCTTGCACCTCCTCTGTGTTGGACTCTCCCT
CGCGACCCTGGGCTATATCTACAACCTGCGGACGTACGGTCGCCTGTCGC
CATTGGGAGGGGCCTACACACACACACGCTGGCTTTCCGGGCTGCAAATA
CTGCTAGGCTTGGGCCTGGCGGGCGTGGGCTGCATGGCATTCCCGTGGTA
TGTCCAAAAAGGGTTCACGGACACATTTACGCCCGAGATGGATGCTTTCC
ACAGTAAAGTTGGATGGGCATATGCGCTGACGCTGGCAGTTGCGCTCTTG
TGTCTGATCACAGGTTTTAGGCTGCTGATGGGCGCCACGAAGATGGACTC
CATCATTGCATGGGGGGCGGGCAGGATGAGGGAAGGGAGGAGGTTGGGGG
ACATTGGCAGGGACAGGGAGGAGAGGAAGGAGGAGATACCGATGAGAAGG
CCATCGTGGAATGATGCAGGGCATGGGCGCCATCCGCCTCCGCCTCGGCC
TGCGTTCTTGTCGTCTGTATGA

Synonyms

Publications