NO13G00220.1, NO13G00220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00220.1
Unique Name	NO13G00220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2753
Alignment location	chr13:83893..87009 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:83893..87009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO13G00220.1 vs.
Match: EWM22837.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 6.600e-41
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 0

Query:   35 LLLHSAAQWGLVKMVARQVELQPESVNAPDTQGWTPLMLASSRGHIAVVAWLLEHGACPHTQDLDGFTALTHAATGRRGKPEVLRMLLERGGADPNVACAWGSTPLMEAAALGFEERVRVLLALHPRERKGGEGEAEKKKGDRGEKIRRRVEGVDVNMQDGKGSTALLK 204
            LLLHSAAQWGL K+V   +E   E+++  D  GWTPLMLA+SRGH +VV  LL+ GA  H +DLDG TALTHAA GR G  +V+++LLE+GGADP  AC WGSTPLMEAAALGFE R++ LL       +G  G++E KK   G         V ++ QDGKG+TAL K
Sbjct:   16 LLLHSAAQWGLEKIVLCLLESHSEAIDVTDEHGWTPLMLAASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRLGNAKVVQLLLEKGGADPGAACKWGSTPLMEAAALGFEGRMQALLTRRRGANQGRGGKSETKKTWSGG------SRVSIDRQDGKGATALFK 178

The following BLAST results are available for this feature:

BLAST of NO13G00220.1 vs.

BLAST of NO13G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22837.1	6.600e-41	55.62	ankyrin repeat protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00220	NO13G00220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00220.1	NO13G00220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00220.1.cds1	NO13G00220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00220.1.cds2	NO13G00220.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00220.1.cds3	NO13G00220.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:83893..87009-
coding sequence from alignment at chr13:83893..87009-

mRNA sequence

>NO13G00220.1 ID=NO13G00220.1|Name=NO13G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2753bp
ACGTGCATACACATCAAGCGAAAGGAAAGAAACAAAAATGAAGCAAGTCT
CGCAAATATTCATCTGGTCTCTCTTATGAATGAAGTCGTGGCTCTATATT
GTATAGTGTTGCATTTTCAATGATCGCAAAGATAGAATAAGCACAAATGG
AATGCCCTAAATTGACGTGGTTCACTTGACAGTAAAACCCACGGAAAGGA
AACAAGAAGGAATGCACGTGTTTACTTTTGTATTGCCCTTGACCCGACCA
ATCCATGCCACCTCTAAATGTAACACACAAGCATTGAGAACGTGCATCTC
GGTGGCTTGAAAGAAATGCACGTGCTGGAAAAACACCACATCACGAAAAG
AAGCAAGCATCACTTGCAACTCCCTTCGCAACGTTTCTCCAAAAAGTCAA
ATCTGGCGGACAATTAAGTCCAGGCGACAGCAGTCTCTCCCTCTCTGCAG
CGCCCGACTCTCCTCCTGTCCCAATCCAATATTCGGGCGGCGTACGCCGG
TGCCTTTCAGTTGGGGCCAGTCTTGTCATCAACCACAGCGTGGATGCGGC
GTTGTATGCTATTCCACACTCTGCAAAATGGATTACTCGATGTGCCCCGC
CAACTCCACTTTCTTCTCATTGAATTGCAGACCATGCGGTGGGCCAGAGA
CGTCCATTCATTCCTAGAGGAGCAGCGCAAAAAGGGCCGCAATTCGGCGA
GTGGCTCGTCCGAGCCCGTGAAACTCCGTCGCTCCCCAACCTCTCTACTT
TTCTTGGCACCTAGTAGGAGACAAACTACCGCTTTCAGGACATTCCGCCC
TTCTGTTTTCATGTTTGGAATCTTCATTGAGATCCGTGTCTTTTGCTCTG
GGACAGGAATGATACATCCAACTCTTACACAACTACACACAGGTCAGGTC
GCGCGCGCGGGTATTTCACGCCGCGCACGCCTGAAGGAGTTTGCTTTCTC
GTGGGGCGACCGAGGCTCTCCCTCCTACAACTTGCTAGGCAACTCAAGGC
AGCTACCACCTAACAAAAAATCAAAAGCAGGTACAGGTTGGAGGATATGT
CCCATATACCACAGTGCGTGCAGCCTCCGGCGGTTCCCAAGGAACTGCCA
CTGCAACCAGTGCTGTTTCAGCCATCCTCTGTCCCGGCTCACGGAGGGCT
GTTGTTGCACAGCGCAGCACAATGGGGCCTAGTGAAGATGGTAGCGCGGC
AAGTGGAACTGCAGCCGGAGAGCGTGAATGCTCCGGACACCCAGGGATGG
ACGCCACTCATGCTGGCCTCGTCGCGGGGGCACATCGCGGTGGTAGCCTG
GCTGCTGGAGCACGGTGCTTGCCCGCACACACAGGACTTAGACGGCTTCA
CGGCCCTGACACACGCCGCCACGGGCCGGAGAGGTAAGCCAGAGGTCCTC
AGGATGTTGTTGGAACGAGGAGGGGCAGACCCAAACGTGGCGTGTGCCTG
GGGATCGACTCCTTTAATGGAAGCGGCCGCCTTGGGGTTTGAGGAGCGGG
TGCGGGTGCTGCTGGCACTTCACCCACGGGAGCGAAAAGGAGGAGAAGGA
GAAGCAGAGAAGAAGAAAGGAGACAGAGGAGAGAAAATAAGAAGAAGGGT
AGAGGGGGTCGACGTCAATATGCAGGATGGGAAGGGGTCTACGGCGCTCT
TAAAGGCCTGCCTTTACGGGCGTGTGACCACGGTGAACCTCCTGCTGGAG
GCCGGAGCCGACCCGACCCTTCATAATCACGAGGGCTTGTCGCCTATGCT
GGCTACACTGCCTTGCCCACACGATAGGGGCATGCTCATAACCCGCTTGT
TGGAGCACGCCATGCTCGAGCCCTGTCGGATCCGCTACCTCCTCAAAGCT
CGTTTCCTTGTCGCACTGTCATCCACCACCAGCCCCCTCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGATCGACGAGAACCCACTCACCATCGAGCA
GGACCGTCCCTCCCTCCCCCCTTACCTCCCTCCTTCCCTCCACGCCTCCA
TCTCCTTTGCTCGGGGCCACGGCGGGCGGTGCCTCCTACGCCCAGCTCCG
TCTCAACCGCAAAGAGTTGGCCTGGCCCCGGGTCGAGGTCCACTCTTCCT
CCTCCTCCTCTTTTTTCTCCTCCTCCTCTTCATCTTCGTCGTTGTTTCTC
GAAAGGACGGCAGGAGCGATAGAAGAAGAAAAGACCCCCAAAAAGCGGAA
AATGAAAGTGGAGGAGGAGGCGGAAGAGGAGGAGGAGAAGGAGGAGGAGA
ATGATGAACGAGAGGACCAAAGCCATCTGACCCAACGGGAGGCGGAGGAG
GAGGAGAAACAGCGGAGCGTCTTATCGCATGTGCTTGGGGCTGGGTTTTC
GTCGGCGTGCATGGACATGCTGGTGGAGATGATGTTGGTGCCATGGGATC
CCATGAGGAGAGGGAGGGAGGTGGGGGTGGAAGGGATAGAAACAGGGGCA
AAGGCAACGAGGGCGTGGGTTGAGAGACATAGAGGGGAGGTGGCGGGTCT
GCGGAGTGCGAGGGAGGAGAGTAGGAGAAGGAAGAGGAGGAGGAGGGAGG
CGGAAGAGGAGGGAGGGTGGATGTGTGAGGATGAGGTTGTTGAGGGGGAG
GAGGCGTTGACGACCGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGACGACGACGACGACGACGAAAGAGTGGATATGGAGGAGGAGACGGAGG
CGAGTGATGACAGTGGAGAGGAGGACGAGAAGGAAGACTGGGGTTGGGAG
TAG

protein sequence of NO13G00220.1

>NO13G00220.1-protein ID=NO13G00220.1-protein|Name=NO13G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MSHIPQCVQPPAVPKELPLQPVLFQPSSVPAHGGLLLHSAAQWGLVKMVA
RQVELQPESVNAPDTQGWTPLMLASSRGHIAVVAWLLEHGACPHTQDLDG
FTALTHAATGRRGKPEVLRMLLERGGADPNVACAWGSTPLMEAAALGFEE
RVRVLLALHPRERKGGEGEAEKKKGDRGEKIRRRVEGVDVNMQDGKGSTA
LLKACLYGRVTTVNLLLEAGADPTLHNHEGLSPMLATLPCPHDRGMLITR
LLEHAMLEPCRIRYLLKARFLVALSSTTSPLSSSSSSSSSSRSTRTHSPS
SRTVPPSPLTSLLPSTPPSPLLGATAGGASYAQLRLNRKELAWPRVEVHS
SSSSSFFSSSSSSSSLFLERTAGAIEEEKTPKKRKMKVEEEAEEEEEKEE
ENDEREDQSHLTQREAEEEEKQRSVLSHVLGAGFSSACMDMLVEMMLVPW
DPMRRGREVGVEGIETGAKATRAWVERHRGEVAGLRSAREESRRRKRRRR
EAEEEGGWMCEDEVVEGEEALTTGDEEEEEEEEEEDDDDDDERVDMEEET
EASDDSGEEDEKEDWGWE*

mRNA from alignment at chr13:83893..87009-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00220.1 ID=NO13G00220.1|Name=NO13G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3117bp|location=Sequence derived from alignment at chr13:83893..87009- (Nannochloropsis oceanica)
ACGTGCATACACATCAAGCGAAAGGAAAGAAACAAAAATGAAGCAAGTCT
CGCAAATATTCATCTGGTCTCTCTTATGAATGAAGTCGTGGCTCTATATT
GTATAGTGTTGCATTTTCAATGATCGCAAAGATAGAATAAGCACAAATGG
AATGCCCTAAATTGACGTGGTTCACTTGACAGTAAAACCCACGGAAAGGA
AACAAGAAGGAATGCACGTGTTTACTTTTGTATTGCCCTTGACCCGACCA
ATCCATGCCACCTCTAAATGTAACACACAAGCATTGAGAACGTGCATCTC
GGTGGCTTGAAAGAAATGCACGTGCTGGAAAAACACCACATCACGAAAAG
AAGCAAGCATCACTTGCAACTCCCTTCGCAACGTTTCTCCAAAAAGTCAA
ATCTGGCGGACAATTAAGTCCAGGCGACAGCAGTCTCTCCCTCTCTGCAG
CGCCCGACTCTCCTCCTGTCCCAATCCAATATTCGGGCGGCGTACGCCGG
TGCCTTTCAGTTGGGGCCAGTCTTGTCATCAACCACAGCGTGGATGCGGC
GTTGTATGCTATTCCACACTCTGCAAAATGGATTACTCGATGTGCCCCGC
CAACTCCACTTTCTTCTCATTGAATTGCAGACCATGCGGTGGGCCAGAGA
CGTCCATTCATTCCTAGAGGAGCAGCGCAAAAAGGGCCGCAATTCGGCGA
GTGGCTCGTCCGAGCCCGTGAAACTCCGTCGCTCCCCAACCTCTCTACTT
TTCTTGGCACCTAGTAGGAGACAAACTACCGCTTTCAGGACATTCCGCCC
TTCTGTTTTCATGTTTGGAATCTTCATTGAGATCCGTGTCTTTTGCTCTG
GGACAGGAATGATACATCCAACTCTTACACAACTACACACAGGTCAGGTC
GCGCGCGCGGGTATTTCACGCCGCGCACGCCTGAAGGAGTTTGCTTTCTC
GTGGGGCGACCGAGGCTCTCCCTCCTACAACTTGCTAGGCAACTCAAGGC
AGCTACCACCTAACAAAAAATCAAAAGCAGGTACAGGTTGGAGGATATGT
CCCATATACCACAGTGCGTGCAGCCTCCGGCGGTTCCCAAGGAACTGCCA
CTGCAACCAGTGCTGTTTCAGCCATCCTCTGTCCCGGCTCACGGAGGGCT
GTTGTTGCACAGCGCAGCACAATGGGGCCTAGTGAAGATGGTAGCGCGGC
AAGTGGAACTGCAGCCGGAGAGCGTGAATGCTCCGGACACCCAGGGATGG
ACGCCACTCATGCTGGCCTCGTCGCGGGGGCACATCGCGGTGGTAGCCTG
GCTGCTGGAGCACGGTGCTTGCCCGCACACACAGGACTTAGACGGCTTCA
CGGCCCTGACACACGCCGCCACGGGCCGGAGAGGTAAGCCAGAGGTCCTC
AGGATGTTGTTGGAACGAGGAGGGGCAGACCCAAACGTGGCGTGTGCCTG
GGGATCGACTCCTTTAATGGAAGCGGCCGCCTTGGGGTTTGAGGAGCGGG
TGCGGGTGCTGCTGGCACTTCACCCACGGGAGCGAAAAGGAGGAGAAGGA
GAAGCAGAGAAGAAGAAAGGAGACAGAGGAGAGAAAATAAGAAGAAGGGT
AGAGGGGGTCGACGTCAATATGCAGGATGGGAAGGGGTCTACGGCGCTCT
TAAAGGTATGAAAACGAAAGGGAGGGAGGGAAGGAACGTGTTAGGGAGGA
GAGAAGAAAGAAACACCGATACGCATACCTGTTTTTGCTTGCAATGACAT
CAAATGGTGTCAAGAAAAAAGAAAAAGAGGGAGAAGGAGTGGGACAATTA
TAAAAGCCACTAAGCTTCTTTACCACCCTCCCACCCCTCCCCTCTTTGCA
GGCCTGCCTTTACGGGCGTGTGACCACGGTGAACCTCCTGCTGGAGGCCG
GAGCCGACCCGACCCTTCATAATCACGAGGGCTTGTCGCCTATGCTGGCT
ACACTGCCTTGCCCACACGATAGGGGCATGCTCATAACCCGCTTGTTGGA
GGTGAGAGGGAGTGAGGGGAGGGAGGGAGGGAGGGAAGGAAAGAAGGAGA
TGCGGACGTCTTCACCCACATTGCACCAACACAGATAATTCGTGGTTTGA
ACTTTTCGCATTCATCTTCTCTTTCACCCTCTCACCCTCTTACGCTCCCT
CCCTTTCCTTTCAAAACAGCACGCCATGCTCGAGCCCTGTCGGATCCGCT
ACCTCCTCAAAGCTCGTTTCCTTGTCGCACTGTCATCCACCACCAGCCCC
CTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATCGACGAGAACCCA
CTCACCATCGAGCAGGACCGTCCCTCCCTCCCCCCTTACCTCCCTCCTTC
CCTCCACGCCTCCATCTCCTTTGCTCGGGGCCACGGCGGGCGGTGCCTCC
TACGCCCAGCTCCGTCTCAACCGCAAAGAGTTGGCCTGGCCCCGGGTCGA
GGTCCACTCTTCCTCCTCCTCCTCTTTTTTCTCCTCCTCCTCTTCATCTT
CGTCGTTGTTTCTCGAAAGGACGGCAGGAGCGATAGAAGAAGAAAAGACC
CCCAAAAAGCGGAAAATGAAAGTGGAGGAGGAGGCGGAAGAGGAGGAGGA
GAAGGAGGAGGAGAATGATGAACGAGAGGACCAAAGCCATCTGACCCAAC
GGGAGGCGGAGGAGGAGGAGAAACAGCGGAGCGTCTTATCGCATGTGCTT
GGGGCTGGGTTTTCGTCGGCGTGCATGGACATGCTGGTGGAGATGATGTT
GGTGCCATGGGATCCCATGAGGAGAGGGAGGGAGGTGGGGGTGGAAGGGA
TAGAAACAGGGGCAAAGGCAACGAGGGCGTGGGTTGAGAGACATAGAGGG
GAGGTGGCGGGTCTGCGGAGTGCGAGGGAGGAGAGTAGGAGAAGGAAGAG
GAGGAGGAGGGAGGCGGAAGAGGAGGGAGGGTGGATGTGTGAGGATGAGG
TTGTTGAGGGGGAGGAGGCGTTGACGACCGGGGATGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGACGACGACGACGACGACGAAAGAGTGGATATGGA
GGAGGAGACGGAGGCGAGTGATGACAGTGGAGAGGAGGACGAGAAGGAAG
ACTGGGGTTGGGAGTAG

Coding sequence (CDS) from alignment at chr13:83893..87009-

>NO13G00220.1 ID=NO13G00220.1|Name=NO13G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr13:83893..87009- (Nannochloropsis oceanica)
ATGTCCCATATACCACAGTGCGTGCAGCCTCCGGCGGTTCCCAAGGAACT
GCCACTGCAACCAGTGCTGTTTCAGCCATCCTCTGTCCCGGCTCACGGAG
GGCTGTTGTTGCACAGCGCAGCACAATGGGGCCTAGTGAAGATGGTAGCG
CGGCAAGTGGAACTGCAGCCGGAGAGCGTGAATGCTCCGGACACCCAGGG
ATGGACGCCACTCATGCTGGCCTCGTCGCGGGGGCACATCGCGGTGGTAG
CCTGGCTGCTGGAGCACGGTGCTTGCCCGCACACACAGGACTTAGACGGC
TTCACGGCCCTGACACACGCCGCCACGGGCCGGAGAGGTAAGCCAGAGGT
CCTCAGGATGTTGTTGGAACGAGGAGGGGCAGACCCAAACGTGGCGTGTG
CCTGGGGATCGACTCCTTTAATGGAAGCGGCCGCCTTGGGGTTTGAGGAG
CGGGTGCGGGTGCTGCTGGCACTTCACCCACGGGAGCGAAAAGGAGGAGA
AGGAGAAGCAGAGAAGAAGAAAGGAGACAGAGGAGAGAAAATAAGAAGAA
GGGTAGAGGGGGTCGACGTCAATATGCAGGATGGGAAGGGGTCTACGGCG
CTCTTAAAGGCCTGCCTTTACGGGCGTGTGACCACGGTGAACCTCCTGCT
GGAGGCCGGAGCCGACCCGACCCTTCATAATCACGAGGGCTTGTCGCCTA
TGCTGGCTACACTGCCTTGCCCACACGATAGGGGCATGCTCATAACCCGC
TTGTTGGAGCACGCCATGCTCGAGCCCTGTCGGATCCGCTACCTCCTCAA
AGCTCGTTTCCTTGTCGCACTGTCATCCACCACCAGCCCCCTCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGATCGACGAGAACCCACTCACCATCG
AGCAGGACCGTCCCTCCCTCCCCCCTTACCTCCCTCCTTCCCTCCACGCC
TCCATCTCCTTTGCTCGGGGCCACGGCGGGCGGTGCCTCCTACGCCCAGC
TCCGTCTCAACCGCAAAGAGTTGGCCTGGCCCCGGGTCGAGGTCCACTCT
TCCTCCTCCTCCTCTTTTTTCTCCTCCTCCTCTTCATCTTCGTCGTTGTT
TCTCGAAAGGACGGCAGGAGCGATAGAAGAAGAAAAGACCCCCAAAAAGC
GGAAAATGAAAGTGGAGGAGGAGGCGGAAGAGGAGGAGGAGAAGGAGGAG
GAGAATGATGAACGAGAGGACCAAAGCCATCTGACCCAACGGGAGGCGGA
GGAGGAGGAGAAACAGCGGAGCGTCTTATCGCATGTGCTTGGGGCTGGGT
TTTCGTCGGCGTGCATGGACATGCTGGTGGAGATGATGTTGGTGCCATGG
GATCCCATGAGGAGAGGGAGGGAGGTGGGGGTGGAAGGGATAGAAACAGG
GGCAAAGGCAACGAGGGCGTGGGTTGAGAGACATAGAGGGGAGGTGGCGG
GTCTGCGGAGTGCGAGGGAGGAGAGTAGGAGAAGGAAGAGGAGGAGGAGG
GAGGCGGAAGAGGAGGGAGGGTGGATGTGTGAGGATGAGGTTGTTGAGGG
GGAGGAGGCGTTGACGACCGGGGATGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGACGACGACGACGACGACGAAAGAGTGGATATGGAGGAGGAGACG
GAGGCGAGTGATGACAGTGGAGAGGAGGACGAGAAGGAAGACTGGGGTTG
GGAGTAG

Synonyms

Publications