NO13G00170.1, NO13G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00170.1
Unique NameNO13G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1686
Alignment locationchr13:73367..75232 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:73367..75232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00170.1 vs.
Match: XP_005854474.1 (hypothetical protein NGA_0103002, partial [Nannochloropsis gaditana CCMP526]; EKU21882.1 hypothetical protein NGA_0103002, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.1 bits (248), Expect = 6.700e-18
Identity = 62/116 (53.45%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   35 EEENTDHRCVAAVDERLDQLTHSVLQDVIPGLERELHKVRGWLAMIEARDHAGTTTMSTSHGDKIAIKREGLSSGSGGGASGSDPHQSSLSWEKAITHHKLETLTTAVRVFKTALG 151
            + EN+D  C+A VD+RL+ L HSV QDVIPGLEREL+KVRGWLAM++AR   G   +S         K + LS  S G +      QS L+ +    HHKLETL TAVRVFKTALG
Sbjct:   26 DAENSDGCCLAGVDDRLEALAHSVSQDVIPGLERELNKVRGWLAMLDARQPVG--CISARANPSGLSKTQSLSERS-GESEAVPISQSELNLK---VHHKLETLNTAVRVFKTALG 135
The following BLAST results are available for this feature:
BLAST of NO13G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854474.16.700e-1853.45hypothetical protein NGA_0103002, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00170NO13G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00170.1NO13G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00170.1.cds1NO13G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00170.1.cds2NO13G00170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00170.1.cds3NO13G00170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00170.1 ID=NO13G00170.1|Name=NO13G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
GGAAGAGATTCCCTTTGATCCTGTGGTTATGGGAACCAGATAATAGGATG
GTGAGTCCGTGGGCGTTTTGGTCGTGGGTTCTGAGCGCAGCGGCTGCATT
TCGTATACACGTCGCCTTTCGAGTCGCTCACGCTCGTCGCTCGTTCCGTG
ACTGAAGGACATATGTGAAAGGGCACGTGATTATCTGACCCACAGCACAA
GACAAGGGACAGGCTCCTCATTTTGGGTTCACAGGCGTGAGGTTGTATAT
TTGCACATTGTTTGCTTGGTTCTGGAGTCGGCAGGGCAACCCTATTCGTA
AATATTATCCGGCAGAGGCATGCCCCAGCGAGACTGAATCTGAACAACAC
AACACATCAATCAAGCGAAAAGGAACGCAGGCAACATAATAATGACATCC
CTCTCGCACTCAGCCTCTTCCGACCGTCACACGCGTGTTTCTGTGCCGGA
GGAACGTACTGCCCATGGCTTCCGGGGCTGCCCCCCTACCGAAGAGGAAG
AAAACACAGACCATCGCTGCGTCGCCGCGGTCGACGAGCGCCTCGATCAG
TTGACGCACTCGGTTTTGCAAGACGTCATTCCAGGACTTGAGCGTGAGCT
GCACAAGGTACGGGGCTGGCTTGCCATGATCGAGGCGCGGGACCACGCCG
GCACCACTACCATGTCTACCTCACATGGCGACAAAATAGCTATCAAACGT
GAAGGGCTTTCCAGTGGCAGCGGTGGTGGGGCGAGCGGCAGCGACCCTCA
TCAATCCTCTCTCTCATGGGAAAAAGCCATTACACATCACAAGCTCGAGA
CATTAACCACCGCCGTCCGCGTATTCAAGACGGCACTTGGTCCCCTGCAA
AAGCCGCCCCACGAAACGACAAACCCCTATCAGTATTAGCCGGAAAGGTA
TGATCACGTCTAAGAAGTAGATGATGGCTAGAAATAAGTTGGAACATCTC
CGCCCCCCAAAAAAACTTATTTATGATTCGCTTTTATGTCTTGCCCACCC
CCTGTCACAAATTCTAAAATGGAAGCTGACTGTGTCGATTTGTCGCGACT
GATTCCGATTGCTTGCAGTATATAGATCCCAAGGTCTTAAAGAAGCGGTG
TTTGCGAGGGGTTATGGCCTAGTGGTATGGCGTCCGCTTTGCAAGCGGAA
GATCGAGGGTTCAAACCCCTCTAGCTCCATGATGATATTTTTTTCCCCGA
TGAGTAGGCACTTTCTCTGTCCTTTGTTGTTTGTCCCTGTTACTTTAACC
TCTATTTCTAAATAACACACGATGTTGTGAACGGCCTATTAATTTATGAC
AGTGCGGCCCATGTCAGGTTGTTTTTCCCATCTTATTCCCATTCCAGCCC
GCACGCGTCCATTCAATGGGAGGCAGGGAAGAATATGTCTGGAGGAGTCA
GTGGAGTTTAAAAAGTCACATCCTTCACCTGCGTGCATAAAGGAAGAAAA
AACAAAGAGACTTGGAAGCTTATGCTCTCAGGCAGAATCGAACCGCCGTT
TCTTCGGGATTTGCTTCTTTGACAAGCCACAACGAAGTGTCCTTCATGTC
GACCGGGTGAATGGGCCGTAATACCGCCTTCGACCCGACCGGAACCGACC
TACTAGACGATGAAAGCCCTCTCGCCGCGGGCTCGAACCGCCGCAGCGCC
GCGAGGGCGACTGCTGTCCCCACTGGACTAGCGACA
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protein sequence of NO13G00170.1

>NO13G00170.1-protein ID=NO13G00170.1-protein|Name=NO13G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTSLSHSASSDRHTRVSVPEERTAHGFRGCPPTEEEENTDHRCVAAVDER
LDQLTHSVLQDVIPGLERELHKVRGWLAMIEARDHAGTTTMSTSHGDKIA
IKREGLSSGSGGGASGSDPHQSSLSWEKAITHHKLETLTTAVRVFKTALG
PLQKPPHETTNPYQY*
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mRNA from alignment at chr13:73367..75232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00170.1 ID=NO13G00170.1|Name=NO13G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at chr13:73367..75232- (Nannochloropsis oceanica)
GGAAGAGATTCCCTTTGATCCTGTGGTTATGGGAACCAGATAATAGGATG
GTGAGTCCGTGGGCGTTTTGGTCGTGGGTTCTGAGCGCAGCGGCTGCATT
TCGTATACACGTCGCCTTTCGAGTCGCTCACGCTCGTCGCTCGTTCCGTG
ACTGAAGGACATATGTGAAAGGGCACGTGATTATCTGACCCACAGCACAA
GACAAGGGACAGGCTCCTCATTTTGGGTTCACAGGCGTGAGGTTGTATAT
TTGCACATTGTTTGCTTGGTTCTGGAGTCGGCAGGGCAACCCTATTCGTA
AATATTATCCGGCAGAGGCATGCCCCAGCGAGACTGAATCTGAACAACAC
AACACATCAATCAAGCGAAAAGGAACGCAGGCAACATAATAATGACATCC
CTCTCGCACTCAGCCTCTTCCGACCGTCACACGCGTGTTTCTGTGCCGGA
GGAACGTACTGCCCATGGCTTCCGGGGCTGCCCCCCTACCGAAGAGGAAG
AAAACACAGACCATCGCTGCGTCGCCGCGGTCGACGAGCGCCTCGATCAG
TTGACGCACTCGGTTTTGCAAGACGTCATTCCAGGACTTGAGCGTGAGCT
GCACAAGGTGAGGTGGAATCATGGTGGGTGGGGAAGGAAAAAGCACTAAG
CAATAAGCAAATAAGCAAATCTGCCATCTTGTAGGTACGGGGCTGGCTTG
CCATGATCGAGGCGCGGGACCACGCCGGCACCACTACCATGTCTACCTCA
CATGGCGACAAAATAGCTATCAAACGTGAAGGGCTTTCCAGTGGCAGCGG
TGGTGGGGCGAGCGGCAGCGACCCTCATCAATCCTCTCTCTCATGGGAAA
AAGCCATTACACATCACAAGCTCGAGACATTAACCACCGCCGTCCGCGTA
TTCAAGGTATGTCCTACGATTACATTAAATGAAATGGAAAAAAAAGAAAA
AAAAGATAAAGAATCCTAAGCATAGGTGTTAAAAAAAAACTACTCACCCA
TCATCACAGACGGCACTTGGTCCCCTGCAAAAGCCGCCCCACGAAACGAC
AAACCCCTATCAGTATTAGCCGGAAAGGTATGATCACGTCTAAGAAGTAG
ATGATGGCTAGAAATAAGTTGGAACATCTCCGCCCCCCAAAAAAACTTAT
TTATGATTCGCTTTTATGTCTTGCCCACCCCCTGTCACAAATTCTAAAAT
GGAAGCTGACTGTGTCGATTTGTCGCGACTGATTCCGATTGCTTGCAGTA
TATAGATCCCAAGGTCTTAAAGAAGCGGTGTTTGCGAGGGGTTATGGCCT
AGTGGTATGGCGTCCGCTTTGCAAGCGGAAGATCGAGGGTTCAAACCCCT
CTAGCTCCATGATGATATTTTTTTCCCCGATGAGTAGGCACTTTCTCTGT
CCTTTGTTGTTTGTCCCTGTTACTTTAACCTCTATTTCTAAATAACACAC
GATGTTGTGAACGGCCTATTAATTTATGACAGTGCGGCCCATGTCAGGTT
GTTTTTCCCATCTTATTCCCATTCCAGCCCGCACGCGTCCATTCAATGGG
AGGCAGGGAAGAATATGTCTGGAGGAGTCAGTGGAGTTTAAAAAGTCACA
TCCTTCACCTGCGTGCATAAAGGAAGAAAAAACAAAGAGACTTGGAAGCT
TATGCTCTCAGGCAGAATCGAACCGCCGTTTCTTCGGGATTTGCTTCTTT
GACAAGCCACAACGAAGTGTCCTTCATGTCGACCGGGTGAATGGGCCGTA
ATACCGCCTTCGACCCGACCGGAACCGACCTACTAGACGATGAAAGCCCT
CTCGCCGCGGGCTCGAACCGCCGCAGCGCCGCGAGGGCGACTGCTGTCCC
CACTGGACTAGCGACA
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Coding sequence (CDS) from alignment at chr13:73367..75232-

>NO13G00170.1 ID=NO13G00170.1|Name=NO13G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr13:73367..75232- (Nannochloropsis oceanica)
ATGACATCCCTCTCGCACTCAGCCTCTTCCGACCGTCACACGCGTGTTTC
TGTGCCGGAGGAACGTACTGCCCATGGCTTCCGGGGCTGCCCCCCTACCG
AAGAGGAAGAAAACACAGACCATCGCTGCGTCGCCGCGGTCGACGAGCGC
CTCGATCAGTTGACGCACTCGGTTTTGCAAGACGTCATTCCAGGACTTGA
GCGTGAGCTGCACAAGGTACGGGGCTGGCTTGCCATGATCGAGGCGCGGG
ACCACGCCGGCACCACTACCATGTCTACCTCACATGGCGACAAAATAGCT
ATCAAACGTGAAGGGCTTTCCAGTGGCAGCGGTGGTGGGGCGAGCGGCAG
CGACCCTCATCAATCCTCTCTCTCATGGGAAAAAGCCATTACACATCACA
AGCTCGAGACATTAACCACCGCCGTCCGCGTATTCAAGACGGCACTTGGT
CCCCTGCAAAAGCCGCCCCACGAAACGACAAACCCCTATCAGTATTAG
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Synonyms
Publications