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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:3830..7725 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00020.1 vs.
Match: XP_008615388.1 (hypothetical protein SDRG_11138 [Saprolegnia diclina VS20]; EQC31215.1 hypothetical protein SDRG_11138 [Saprolegnia diclina VS20]) HSP 1 Score: 300.4 bits (768), Expect = 1.100e-77 Identity = 209/527 (39.66%), Postives = 288/527 (54.65%), Query Frame = 0
Query: 8 QKSASSLRWVILLAASLLMLSNYFVYDIPASLKDLLRQ--NMGLDKADFEPMYSLLYTVYSLPNIVLPFFGGIFVDKFGARICLIAFTLFLLAGQLFFALGGVYKSFPLMLLGRTIYGLGGENMSVAQSSLVAEWFRGKELAFAFGINLSCSRLGSVINNFVEPEVADAWGGANGALFFGV---GVLCIGS----PPGKHA-LPRALPPSF-SPAVLLVWQGAAANEI-----FLGHVLDLGLVLLGGVRHYLTLQQYCILAAAGARLLPHPPPSCTLTNSSACQSPSNPP--SPDCPSSSNFQPPLPDM-----IQVKD----------------IDCSLEEWSGPGACTQVFCEGQKAGIRQSDRIMSIPYTISAVLSPFLGLAVDRFGRRAVVIALAPVVLIGVHLSL-----AYWRWLPPSVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSHYLPHVELLFVCLAIVGVFCGLLLNFLDARACQILNRPQPA 491
+KS +RW++L+ + LM+ NY+ +D PA+LK L+Q N FE ++++LYT+YS+PNI+LPFFGG VD+ GAR+CL+ F + GQ+ FA G F +MLLGR ++GLGGE++ VAQS+LVA WF+ KELA A GINLS +RLGSV NN + P +A + + AL+ GV GV I + P K A A SF + A + QG + +I + +V+ G V + + ++ R PPP+C A +N +P CP F PLP + IQ + I+C + W G + V+C + A + MS+PY ISAVLSP +G AVDR G RA + L+ V+L VHL L YW VPLV QG+AY FAA LWPS+P+ V VG AYG T+IQN GLALFP+L A +Y + ++ YLP VE+LFV +G G+LLN +D + +LNR A
Sbjct: 3 EKSQLPMRWLVLVLSCTLMIGNYYCFDNPAALKSQLQQRFNGAFPPDRFEFLFNMLYTLYSIPNIILPFFGGFLVDRLGARLCLLMFATTITLGQIVFAFGCSISQFNVMLLGRILFGLGGESLGVAQSTLVASWFKNKELALALGINLSIARLGSVFNNELSPVIASEY-NVSSALWMGVVMCGVSLIAALILIPIDKRADAAIARTKSFGASAPVAKDQGFSCRDIRSFRPIFWLLAIACMVVYGCVIPFNNVASSLLMERDFFR---QPPPACQQCGEGAYAGDTNCSVIAPTCPPVPPFSWPLPALNRNCSIQSPEDQLHCAHTAPYVTEAMINCDDDAWK-KGPFSAVYCSRKSAAAAAAATPMSVPYLISAVLSPVMGYAVDRVGFRAGLALLSSVLLTVVHLLLGTTHVTYW------VPLVLQGVAYCVFAAALWPSIPYVVDARLVGSAYGAITSIQNLGLALFPMLVAMVY-SVENKYLPSVEMLFVAFGALGSVAGILLNIVDYKNGSVLNRSSAA 517
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00020.1 ID=NO13G00020.1|Name=NO13G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp ATGCCTCCGCCGGTTCTCCAGCAAAAGTCCGCGTCGTCCTTGCGATGGGT CATCCTACTGGCAGCCTCCCTCTTAATGCTCAGCAACTATTTCGTCTACG ACATCCCGGCCTCGCTCAAGGACCTACTTAGGCAAAATATGGGGTTGGAC AAAGCTGACTTCGAGCCCATGTACTCGCTCTTGTACACCGTCTACTCCCT GCCCAACATCGTTTTGCCCTTCTTCGGTGGCATCTTTGTCGACAAGTTCG GGGCGCGGATCTGCTTGATTGCCTTCACTCTCTTCCTCCTCGCGGGCCAG CTCTTCTTTGCCCTCGGCGGGGTGTACAAGTCCTTCCCTCTGATGCTCTT GGGGAGGACGATCTATGGCCTAGGGGGGGAGAACATGTCCGTGGCACAAA GCAGCCTGGTGGCGGAGTGGTTTAGGGGAAAAGAGCTGGCCTTCGCCTTC GGTATCAACCTCTCCTGCTCCCGCCTGGGATCAGTCATCAATAATTTCGT GGAACCCGAGGTGGCCGACGCCTGGGGTGGAGCAAATGGGGCACTCTTCT TCGGTGTGGGGGTCTTGTGTATCGGATCCCCTCCTGGAAAGCATGCCCTC CCTCGCGCCCTTCCCCCTTCCTTCTCACCTGCCGTCCTCCTTGTGTGGCA AGGCGCGGCAGCAAATGAAATCTTTCTCGGCCATGTTCTGGACCTTGGCC TTGTGCTGCTTGGCGGTGTACGGCACTATCTTACCCTTCAACAATATTGC ATCCTCGCTGCTGCAGGAGCGCGACTACTTCCGCACCCCCCCCCCTCCTG CACCCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCCGCCCTCTC CTGATTGCCCATCCTCATCCAACTTCCAGCCGCCTCTGCCTGACATGATC CAAGTGAAAGACATCGACTGCTCCCTGGAGGAGTGGAGCGGGCCGGGTGC TTGCACTCAGGTGTTCTGTGAGGGGCAAAAGGCAGGGATTAGGCAGAGCG ACCGGATCATGTCAATCCCATACACCATCTCTGCCGTCCTCTCTCCCTTT CTGGGCTTGGCCGTCGATCGCTTCGGTCGGCGTGCTGTGGTGATCGCTCT GGCACCCGTGGTGCTTATTGGCGTGCATCTTTCGCTGGCATACTGGCGTT GGCTTCCCCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGCTTACAGCGCC TTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGATCG GGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATGGAGGCCTGG CCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGCCGCCGATTCTCAC TACCTTCCCCATGTCGAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGT CTTCTGTGGTCTACTACTCAACTTCCTGGATGCACGCGCCTGTCAGATCC TGAACCGACCCCAGCCCGCTGGAGGAGGAGGAGGGCGGGGCGGGGAAGAA AGACCTGGAGCGAAGAGCAACAAGAAACGGGAGCCATTGCTCCATGAGGT AGTGGAAGGAGTGAAGGTGCCGATATCTTCTTCTTCTTCCCCCATCTACG TGTAG back to topprotein sequence of NO13G00020.1 >NO13G00020.1-protein ID=NO13G00020.1-protein|Name=NO13G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp MPPPVLQQKSASSLRWVILLAASLLMLSNYFVYDIPASLKDLLRQNMGLD KADFEPMYSLLYTVYSLPNIVLPFFGGIFVDKFGARICLIAFTLFLLAGQ LFFALGGVYKSFPLMLLGRTIYGLGGENMSVAQSSLVAEWFRGKELAFAF GINLSCSRLGSVINNFVEPEVADAWGGANGALFFGVGVLCIGSPPGKHAL PRALPPSFSPAVLLVWQGAAANEIFLGHVLDLGLVLLGGVRHYLTLQQYC ILAAAGARLLPHPPPSCTLTNSSACQSPSNPPSPDCPSSSNFQPPLPDMI QVKDIDCSLEEWSGPGACTQVFCEGQKAGIRQSDRIMSIPYTISAVLSPF LGLAVDRFGRRAVVIALAPVVLIGVHLSLAYWRWLPPSVPLVGQGLAYSA FAAVLWPSVPFTVPEDRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSH YLPHVELLFVCLAIVGVFCGLLLNFLDARACQILNRPQPAGGGGGRGGEE RPGAKSNKKREPLLHEVVEGVKVPISSSSSPIYV* back to topmRNA from alignment at chr13:3830..7725- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00020.1 ID=NO13G00020.1|Name=NO13G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3896bp|location=Sequence derived from alignment at chr13:3830..7725- (Nannochloropsis oceanica) ATGCCTCCGCCGGTTCTCCAGCAAAAGTCCGCGTCGTCCTTGCGATGGGT
CATCCTACTGGCAGCCTCCCTCTTAATGCTCAGCAACTATTTCGTCTACG
ACATCCCGGCCTCGCTCAAGGACCTACTTAGGCAAAATATGGGGTTGGAC
AAAGCTGACTTCGAGGTTAGGGGAGGGGATGGGGAGGGGATGGGAGGAGA
GAAAGGGGGGGGGAGGGAGATTGCCTCGTGTCCGCAGAACAAGAGCCGCT
ATCCTCTTTGTATACTCCATCCCCTCCGTCTAAGCCTTTCGCTTTCTTTC
TCCCGCTCTTGTTAACTTTCTCTCCAGCCCATGTACTCGCTCTTGTACAC
CGTCTACTCCCTGCCCAACATCGTTTTGCCCTTCTTCGGTGGCATCTTTG
TCGACAAGTTCGGGGCGCGGATCTGCTTGATTGGTGCGTGCTTCCCCTTC
CCTGCCCCTCCTTGCCTGTTTTCTTTTCTCCGGGCTCTCTTCACTTACCC
ACCCTTCTCTTCCCCTCCCTCCCTCATTAGCCTTCACTCTCTTCCTCCTC
GCGGGCCAGCTCTTCTTTGCCCTCGGCGGGGTGTACAAGTCCTTCCCTCT
GATGCTCTTGGGGAGGACGATCTATGGCCTAGGGGGGGAGAACATGTCCG
TGGCACAAAGCAGCCTGGTGGCGGAGTGGTTTAGGGTGAGGAAGGAGGGA
GGGCGGGAGGGTGGGGCGGTGGGAGAGTAGCTGCTGCCGCCTGGACGATC
CGTACACCTTCTCTCTGACCGTCACCTTCCCCTCTCCCGTCGTTGCCGGC
CTAGGGAAAAGAGCTGGCCTTCGCCTTCGGTATCAACCTCTCCTGCTCCC
GCCTGGGATCAGTCATCAATAATTTCGTGGAACCCGAGGTAGGCTTCCTC
CCTCCCTCCCTCCCTTCCTCTCTCCCTCCCTCTCCCGCTTCCTTCCTTCT
TTCTGACGATCGTTCTCTCCGCCCCCTCCCCCCCTCTCTTTCCTCCTTCA
ACAGGTGGCCGACGCCTGGGGTGGAGCAAATGGGGCACTCTTCTTCGGTG
TGGGGGTCTTGTGTATCGGGTACAGCCTTGCCTCCCTCCTTCCCTCCCCC
CCGCCATCCCTCCATCCACCTTTCCAATCTGTCCTCTCCTTTCTCACTTT
CCCCCCCTTCCTCTCTCCTTCCCTTTCCAAGTCTCCTATGCGGCCTGGTC
ATGGCTCCCGTCGACAAGCTAGTTGAACAACGCCTCCTCGCCTCCCGCCC
TTCCTCCCTCCCGTCCTCGTCCTCCGAGCTTGAAGATCCCCTCCTGGAAA
GCATGCCCTCCCTCGCGCCCTTCCCCCTTCCTTCTCACCTGCCGTCCTCC
TTGTGTGGCAAGGCGCGGCAGCAAATGAAATCTTTCTCGGCCATGTTCTG
GACCTTGGCCTTGTGCTGCTTGGTGCGAAAGGGCGGGGAAGAAGGCGGGA
AGAAGGGAGGGAGGGGAGCAAGGGGTGTAAAATTGAGCCGAGCTCGTCCT
CGTGTACTCATTTTCTCTTCTTTCCCCTTCCCTCTCCCTCTTCATCTCTA
TCTCTCTCCCTCTCGCCATCTCTCTCTTCTTAATTTCTCTCTCTCTCGCC
ATCTCTCTCCCTCCCTCTCCCTGCATCAGGCGGTGTACGGCACTATCTTA
CCCTTCAACAATATTGCATCCTCGCTGCTGCAGGTAGGGAAAAGACGAAG
GCTCGGGATGAAGGCTCGGCAGTGAGCTGGAAGGGTAGAGAGCGTGGTTA
GGAGGATGATAGAGGGGGCGTTTTTATGGAATGGAGGAAAGAGCTTCGAA
GGATGAAGGTAGGGGTCTACAGGATGAGTGCGCTTACAGGACGGAGGGAG
TGGACCTGAAGGATGGAGGGGGTAGACTCAAAGGATGGAAGGAAGGGGGG
GGAGGGCTTGACGAGAGGAGGATGCATAGACTAACCCCATCCATCCCTTT
TATCCTCTCTCCTTCTCTCCCTCTGTTCCCCTCTCCCTCGCCCTCTCCTG
TCGTAGGAGCGCGACTACTTCCGCACCCCCCCCCCTCCTGCACCCTCACC
AACAGCAGCGCCTGCCAGTCGCCCTCCAACCCGCCCTCTCCTGATTGCCC
ATCCTCATCCAACTTCCAGCCGCCTCTGCCTGACATGATCCAAGTGTAGG
TGTGGGGATAGAGTGTATAGGACAGGCAGTGAAGTCATTGCTCCGCCGAC
GAGTTGGGCGGGCTGGACGCCTGTACTGAGGCGCAGCTCTGATTCCTTTT
CCTCCCTCCCTTTTCCCGCCCCTTCGTTCTCAGGAAAGACATCGACTGCT
CCCTGGAGGAGTGGAGCGGGCCGGGTGCTTGCACTCAGGTGTTCTGTGAG
GGGCAAAAGGCAGGGATTAGGCAGAGCGACCGGGTGAGAAGGGGAGATGA
AGGGGAGGGTGGGGCTAGGCAGAGGTAGGACCAGGATTGAGATAGCATGA
GGAAGGAGGAGGGTGAGATGACGCGCATATTCTCATGCGGGTGCAGACCA
CCGATCCTCTCACTCCTCCCTCCCTTCCTCCCTCCTCCCTTAGATCATGT
CAATCCCATACACCATCTCTGCCGTCCTCTCTCCCTTTCTGGGCTTGGCC
GTCGATCGCTTCGGTCGGCGTGCTGTGGTGATCGCTCTGGCACCCGTGGT
GCTTATTGGCGTGCATCTTTCGCTGGGTAGGTAGGGAGAGAGGGGGGGAA
GGGGAGGGAGGAAGGAAGAAAGCGGGGTGAGGGCCCATATCGTGGTGCCG
GCACGCTGCCAACCATCGTATTTAAAGGCCTGCCTCTCGATGAGGAGAGA
AGCAGGCAAGGAAGGAAGGAAAGAAGGAGGGAGGGAAGGGGGAAAACGGT
GATAACTAGAAATCACACACCGCCTTGCAGACATTCCTACACCCGTGTAC
ACATCTCACATACACATGTATCATACGTATCTTACCTACATGTATCCCAC
ATTTCACACATATACCCGGCATCTCACATGTACGTAGCATATCTCACACT
CATACTATATAAATTCCTTCCACACACATATTACATCTGGCACTCGTACA
TAATAAAGCATACTGGCGTTGGCTTCCCCCGTCGGTGCCTCTCGTCGGAC
AAGGCCTAGCTTACAGGTAAGCGACCTCTCTGCCGCGTTTCCCTTTGCTG
CTCTACGTATTTCCAGCACTCTCCTCTCTTCCCCTACTCCCCTCCCTCAG
CGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGG
ATCGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATGGAGGC
CTGGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGTAGGAGGAAT
GGGGAAGGAGTAAGGGTGGGAATGCCGACGGGGATTAGGGATAAACGCAC
TGCTGTAATTTGCTGAATTTGCTTGCTCCCACTCTTTTCCCGCTCTTCAA
CTTCCATACCTCCCTCCCTTTTTCGCTCAGGCCGCCGATTCTCACTACCT
TCCCCATGTCGAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGTCTTCT
GTGGTCTACTACTCAACTTCCTGGATGCACGGTACGTAGCAAGGGAGGGG
ATGGAAAGAGTGGATGAACAGGTAGATCCAACCGACCTTTGGCTGTGTCC
CGAGCACATGGTGAGGACTTCTATACCTTCTTCTTCCTCTGCCCCTTTCA
TCTCTCACCTCCTTCTTTCTACCGCAGCGCCTGTCAGATCCTGAACCGAC
CCCAGCCCGCTGGAGGAGGAGGAGGGCGGGGCGGGGAAGAAAGACCTGGA
GCGAAGAGCAACAAGAAACGGGAGCCATTGCTCCATGAGGTAGTGGAAGG
AGTGAAGGTGCCGATATCTTCTTCTTCTTCCCCCATCTACGTGTAG back to topCoding sequence (CDS) from alignment at chr13:3830..7725- >NO13G00020.1 ID=NO13G00020.1|Name=NO13G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr13:3830..7725- (Nannochloropsis oceanica) ATGCCTCCGCCGGTTCTCCAGCAAAAGTCCGCGTCGTCCTTGCGATGGGT CATCCTACTGGCAGCCTCCCTCTTAATGCTCAGCAACTATTTCGTCTACG ACATCCCGGCCTCGCTCAAGGACCTACTTAGGCAAAATATGGGGTTGGAC AAAGCTGACTTCGAGCCCATGTACTCGCTCTTGTACACCGTCTACTCCCT GCCCAACATCGTTTTGCCCTTCTTCGGTGGCATCTTTGTCGACAAGTTCG GGGCGCGGATCTGCTTGATTGCCTTCACTCTCTTCCTCCTCGCGGGCCAG CTCTTCTTTGCCCTCGGCGGGGTGTACAAGTCCTTCCCTCTGATGCTCTT GGGGAGGACGATCTATGGCCTAGGGGGGGAGAACATGTCCGTGGCACAAA GCAGCCTGGTGGCGGAGTGGTTTAGGGGAAAAGAGCTGGCCTTCGCCTTC GGTATCAACCTCTCCTGCTCCCGCCTGGGATCAGTCATCAATAATTTCGT GGAACCCGAGGTGGCCGACGCCTGGGGTGGAGCAAATGGGGCACTCTTCT TCGGTGTGGGGGTCTTGTGTATCGGATCCCCTCCTGGAAAGCATGCCCTC CCTCGCGCCCTTCCCCCTTCCTTCTCACCTGCCGTCCTCCTTGTGTGGCA AGGCGCGGCAGCAAATGAAATCTTTCTCGGCCATGTTCTGGACCTTGGCC TTGTGCTGCTTGGCGGTGTACGGCACTATCTTACCCTTCAACAATATTGC ATCCTCGCTGCTGCAGGAGCGCGACTACTTCCGCACCCCCCCCCCTCCTG CACCCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCCGCCCTCTC CTGATTGCCCATCCTCATCCAACTTCCAGCCGCCTCTGCCTGACATGATC CAAGTGAAAGACATCGACTGCTCCCTGGAGGAGTGGAGCGGGCCGGGTGC TTGCACTCAGGTGTTCTGTGAGGGGCAAAAGGCAGGGATTAGGCAGAGCG ACCGGATCATGTCAATCCCATACACCATCTCTGCCGTCCTCTCTCCCTTT CTGGGCTTGGCCGTCGATCGCTTCGGTCGGCGTGCTGTGGTGATCGCTCT GGCACCCGTGGTGCTTATTGGCGTGCATCTTTCGCTGGCATACTGGCGTT GGCTTCCCCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGCTTACAGCGCC TTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGATCG GGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATGGAGGCCTGG CCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGCCGCCGATTCTCAC TACCTTCCCCATGTCGAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGT CTTCTGTGGTCTACTACTCAACTTCCTGGATGCACGCGCCTGTCAGATCC TGAACCGACCCCAGCCCGCTGGAGGAGGAGGAGGGCGGGGCGGGGAAGAA AGACCTGGAGCGAAGAGCAACAAGAAACGGGAGCCATTGCTCCATGAGGT AGTGGAAGGAGTGAAGGTGCCGATATCTTCTTCTTCTTCCCCCATCTACG TGTAG back to top
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