NO12G03970.1, NO12G03970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03970.1
Unique NameNO12G03970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1075
Alignment locationchr12:1137870..1139235 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1137870..1139235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G03970.1 vs.
Match: EWM25645.1 (14 kda subunit splicing factor 3b [Nannochloropsis gaditana])

HSP 1 Score: 244.6 bits (623), Expect = 1.600e-61
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0 
Query:    1 MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRVNLEKQRKEVEELRKMVDAGR 122
            MADAANFRQRNRLSPDVTR+LYVRNLPFKLSS+ELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR+NLEKQRKEVEELRKMVDAGR
Sbjct:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGR 121
The following BLAST results are available for this feature:
BLAST of NO12G03970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25645.11.600e-6197.5214 kda subunit splicing factor 3b [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03970NO12G03970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03970.1NO12G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03970.1.cds1NO12G03970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03970.1.cds2NO12G03970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03970.1 ID=NO12G03970.1|Name=NO12G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp
CCTTGGCTTAGAATTAGAGCCTGTCGCAGGTAGTGCGTGGGATGGCGGCG
TGAAGAGGGTGAGAGTTTTGTCTGGCGCGGGTTTGGACGCGTCTCGTCAC
GGGCGACGTTGCTCGTGTCTCTCGTCGCAGCGGTAAGGAGGGACCACCCG
TTGTGGATTGTGAAGCCCATCGCAGCGGCAAGGGGCTGAATAGCAGCGTT
TTATGTCTGCTTGGTAAGGTGGGGGGCATAACGCAGCCGATAGCGGTGGC
TGTAGGTGGTTTGTGATAGACAGAATTGCCTCGTCTGTTGTTTGGTGATC
GGCTTGGCGACGAGGGAGGACACGTAGATTGAGACATAAATGATGACCGG
AGACGCCCAGCTTCTCCCGTTCACGCCCTGTCCTGTTGTCTGTTGCCTGG
CCTCATAAGCCGGGTTTGTCATCTGTCTATGGCTGTGTGGCTTGTGAGTG
CATGAAAGTGTGCTAGTGCTCCCTGCCCAGCCTCATCCCCCGTACCAGCC
TCCCTTGCCCCGCTCTCACCAAAAACCAAACGCATCATCGTCACCCTCCA
TCCTTCCTCCTTCCGTGTCGCACCCAACATCACAACACAGATGGCCGACG
CCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCGACGTGACCCGCATC
CTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCGGATGAACTTTACGA
TATCTTTGGCAAGTACGGTCCAATCAGACAGATACGCGTTGGTGCCGCAA
ACGAGAATCGCGGCAAGGCCTTTGTCATCTACGAGGATATTTACGATGCC
AAGGACGCCCTCGAGCACTTGAATGGCTTCAACGTATGCGGCCGGTATTT
GGTGGTCCTGTACTTTCACCCAGAGAAGGAACAGAAGCGAGTGAACCTGG
AGAAGCAACGGAAAGAGGTCGAGGAGCTACGGAAAATGGTCGATGCCGGC
AGGGGGAAATGAGGAGCAGACGAGGGAGCAGAAGAGGATGTGGGTGAAAA
TGTACATGGATGATCAAATGAAAAGGAAAAAATATCGAACGCGCGAAGTT
TTGGAGAGAAAAAAGTATAGAAGGA
back to top

protein sequence of NO12G03970.1

>NO12G03970.1-protein ID=NO12G03970.1-protein|Name=NO12G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRV
GAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR
VNLEKQRKEVEELRKMVDAGRGK*
back to top

mRNA from alignment at chr12:1137870..1139235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03970.1 ID=NO12G03970.1|Name=NO12G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at chr12:1137870..1139235+ (Nannochloropsis oceanica)
CCTTGGCTTAGAATTAGAGCCTGTCGCAGGTAGTGCGTGGGATGGCGGCG
TGAAGAGGGTGAGAGTTTTGTCTGGCGCGGGTTTGGACGCGTCTCGTCAC
GGGCGACGTTGCTCGTGTCTCTCGTCGCAGCGGTAAGGAGGGACCACCCG
TTGTGGATTGTGAAGCCCATCGCAGCGGCAAGGGGCTGAATAGCAGCGTT
TTATGTCTGCTTGGTAAGGTGGGGGGCATAACGCAGCCGATAGCGGTGGC
TGTAGGTGGTTTGTGATAGACAGAATTGCCTCGTCTGTTGTTTGGTGATC
GGCTTGGCGACGAGGGAGGACACGTAGATTGAGACATAAATGATGACCGG
AGACGCCCAGCTTCTCCCGTTCACGCCCTGTCCTGTTGTCTGTTGCCTGG
CCTCATAAGCCGGGTTTGTCATCTGTCTATGGCTGTGTGGCTTGTGAGTG
CATGAAAGTGTGCTAGTGCTCCCTGCCCAGCCTCATCCCCCGTACCAGCC
TCCCTTGCCCCGCTCTCACCAAAAACCAAACGCATCATCGTCACCCTCCA
TCCTTCCTCCTTCCGTGTCGCACCCAACATCACAACACAGATGGCCGACG
CCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCGACGTGACCCGCATC
CTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCGGATGAACTTTACGA
TATCTTTGGCAAGTACGGTCCAATCAGACAGGTACGTCTTGAGAGTTTTG
GGGTGGGAGGGAGAGAACGCAGCAGGAGGGTGAGTGTGAAGGGATGTGAT
GCCATACATGCGAGTTTCCTGCACTTTTGCATATCATTGCCGGATTTGAG
TGACTCGCGCGGTCAATGGGGCATGTTGGCGTGTATCGCCCCTTGGTTCT
GCTCTCTTCTCCGGTTTACGGCAACGAGTCACGGTTCCCCTACCTCTTTT
GCTCACGGCACGGAATACTTTCCTCCTTTTCTCGTGTTTCCGCATCCTCC
CTTTCCCTCCCCCTACGCCCAGATACGCGTTGGTGCCGCAAACGAGAATC
GCGGCAAGGCCTTTGTCATCTACGAGGATATTTACGATGCCAAGGACGCC
CTCGAGCACTTGAATGGCTTCAACGTATGCGGCCGGTATTTGGTGGTCCT
GTACTTTCACCCAGAGAAGGAACAGAAGCGAGTGAACCTGGAGAAGCAAC
GGAAAGAGGTCGAGGAGCTACGGAAAATGGTCGATGCCGGCAGGGGGAAA
TGAGGAGCAGACGAGGGAGCAGAAGAGGATGTGGGTGAAAATGTACATGG
ATGATCAAATGAAAAGGAAAAAATATCGAACGCGCGAAGTTTTGGAGAGA
AAAAAGTATAGAAGGA
back to top

Coding sequence (CDS) from alignment at chr12:1137870..1139235+

>NO12G03970.1 ID=NO12G03970.1|Name=NO12G03970.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr12:1137870..1139235+ (Nannochloropsis oceanica)
ATGGCCGACGCCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCGACGT
GACCCGCATCCTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCGGATG
AACTTTACGATATCTTTGGCAAGTACGGTCCAATCAGACAGATACGCGTT
GGTGCCGCAAACGAGAATCGCGGCAAGGCCTTTGTCATCTACGAGGATAT
TTACGATGCCAAGGACGCCCTCGAGCACTTGAATGGCTTCAACGTATGCG
GCCGGTATTTGGTGGTCCTGTACTTTCACCCAGAGAAGGAACAGAAGCGA
GTGAACCTGGAGAAGCAACGGAAAGAGGTCGAGGAGCTACGGAAAATGGT
CGATGCCGGCAGGGGGAAATGA
back to top
Synonyms
Publications