NO12G03960.1, NO12G03960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03960.1
Unique Name	NO12G03960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2638
Alignment location	chr12:1136175..1139235 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:1136175..1139235 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G03960.1 vs.
Match: EWM25630.1 (3-oxoacyl-(acyl-carrier-protein) reductase [Nannochloropsis gaditana])

HSP 1 Score: 476.5 bits (1225), Expect = 6.000e-131
Identity = 261/291 (89.69%), Postives = 274/291 (94.16%), Query Frame = 0

Query:    1 MLARALAL--TTLVMLSSSSLAFVPPAFRATARSSGAMRMMAAAAGEKVDVAIVTGGSRGIGKACALELAKYGVKVVVNYASSAESALAVVEEIKALGSEAVAIKADMSKPAEVDALFKETAAAFKDPVSILVNNAGITKDGLVLTMKPENWQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPLGRLGKSSEVAGMVRFLAIDPAALYITGHSFDVDGGIAIG 290
            MLAR   L  T  VM SSS+LAFV PA R TARS+GA+RMMAA AGEK +VAIVTG SRGIGKACALELA++GVKVVVNYASSA+SALAVVEEIKALGSEAVAIKADMSKP EV+ALFKETAAAFKDPV+ILVNNAGITKDGLV+TMKPE WQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPLGRLG++SEVAGMVRFLA+DPAA YITGHSFDVDGGIAIG
Sbjct:   26 MLARVCVLVATFFVMFSSSALAFVAPAVRMTARSAGALRMMAADAGEKANVAIVTGASRGIGKACALELAQHGVKVVVNYASSADSALAVVEEIKALGSEAVAIKADMSKPEEVEALFKETAAAFKDPVNILVNNAGITKDGLVMTMKPEAWQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPLGRLGRASEVAGMVRFLAVDPAAAYITGHSFDVDGGIAIG 316

The following BLAST results are available for this feature:

BLAST of NO12G03960.1 vs.

BLAST of NO12G03960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25630.1	6.000e-131	89.69	3-oxoacyl-(acyl-carrier-protein) reductase [Nannoc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G03960	NO12G03960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03960.1	NO12G03960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03960.1.cds1	NO12G03960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03960.1.cds2	NO12G03960.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03960.1.cds3	NO12G03960.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03960.1.cds4	NO12G03960.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:1136175..1139235-
coding sequence from alignment at chr12:1136175..1139235-

mRNA sequence

>NO12G03960.1 ID=NO12G03960.1|Name=NO12G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp
TCCTTCTATACTTTTTTCTCTCCAAAACTTCGCGCGTTCGATATTTTTTC
CTTTTCATTTGATCATCCATGTACATTTTCACCCACATCCTCTTCTGCTC
CCTCGTCTGCTCCTCATTTCCCCCTGCCGGCATCGACCATTTTCCGTAGC
TCCTCGACCTCTTTCCGTTGCTTCTCCAGGTTCACTCGCTTCTGTTCCTT
CTCTGGGTGAAAGTACAGGACCACCAAATACCGGCCGCATACGTTGAAGC
CATTCAAGTGCTCGAGGGCGTCCTTGGCATCGTAAATATCCTCGTAGATG
ACAAAGGCCTTGCCGCGATTCTCGTTTGCGGCACCAACGCGTATCTGGGC
GTAGGGGGAGGGAAAGGGAGGATGCGGAAACACGAGAAAAGGAGGAAAGT
ATTCCGTGCCGTGAGCAAAAGAGGTAGGGGAACCGTGACTCGTTGCCGTA
AACCGGAGAAGAGAGCAGAACCAAGGGGCGATACACGCCAACATGCCCCA
TTGACCGCGCGAGTCACTCAAATCCGGCAATGATATGCAAAAGTGCAGGA
AACTCGCATGTATGGCATCACATCCCTTCACACTCACCCTCCTGCTGCGT
TCTCTCCCTCCCACCCCAAAACTCTCAAGACGTACCTGTCTGATTGGACC
GTACTTGCCAAAGATATCGTAAAGTTCATCCGAAGAGAGTTTAAAGGGCA
GGTTACGCACGTACAGGATGCGGGTCACGTCGGGCGACAGGCGGTTCCGC
TGCCGGAAGTTAGCGGCGTCGGCCATCTGTGTTGTGATGTTGGGTGCGAC
ACGGAAGGAGGAAGGATGGAGGGTGACGATGATGCGTTTGGTTTTTGGTG
AGAGCGGGGCAAGGGAGGCTGGTACGGGGGATGAGGCTGGGCAGGGAGCA
CTAGCACACTTTCATGCACTCACAAGCCACACAGCCATAGACAGATGACA
AACCCGGCTTATGAGGCCAGGCAACAGACAACAGGACAGGGCGTGAACGG
GAGAAGCTGGGCGTCTCCGGTCATCATTTATGTCTCAATCTACGTGTCCT
CCCTCGTCGCCAAGCCGATCACCAAACAACAGACGAGGCAATTCTGTCTA
TCACAAACCACCTACAGCCACCGCTATCGGCTGCGTTATGCCCCCCACCT
TACCAAGCAGACATAAAACGCTGCTATTCAGCCCCTTGCCGCTGCGATGG
GCTTCACAATCCACAACGGGTGGTCCCTCCTTACCGCTGCGACGAGAGAC
ACGAGCAACGTCGCCCGTGACGAGACGCGTCCAAACCCGCGCCAGACAAA
ACTCTCACCCTCTTCACGCCGCCATCCCACGCACTACCTGCGACAGGCTC
TAATTCTAAGCCAAGGCTGAACTTGCCCTTCTACGCAGAAATGCTTGCCC
GCGCCCTCGCCCTAACGACGCTCGTCATGCTCTCCTCCTCCTCCTTGGCC
TTTGTTCCCCCCGCCTTCCGTGCCACGGCCCGCAGCAGCGGTGCCATGCG
CATGATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAG
GAGGATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTAC
GGTGTGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGC
CGTGGTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAGG
CCGATATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAGGAGACCGCC
GCGGCCTTCAAGGACCCCGTATCCATTCTTGTCAATAACGCCGGCATCAC
CAAGGACGGCCTGGTCCTGACCATGAAGCCCGAGAACTGGCAAGCCGTGA
TCGATATCAATCTTTCCGGTGTTTTCTACGCCTCCAAGGCTGCCGCGTCC
GTCATGCTCCGAGCCCGGCGCGGCCGCATCATCAACATGGCCTCGGTTGT
CGGCCAGATCGGGAATCCTGGACAGGCCAACTATGCGGCGGCTAAAGGCG
GTGTCCTGGGCCTGACTAAGGCCAACGCCAAGGAGTTCGCGGCGCGTGGG
GTGACGGTCAACGCGGTCTGCCCCGGGTTCATCGAGAGTGACATGACAGA
AAAGCTGGACTTAGACGGAATCAAGAAGGCGATCCCGTTGGGGAGGCTGG
GGAAGTCGAGCGAGGTGGCCGGCATGGTGCGTTTCTTGGCGATTGACCCG
GCGGCGCTGTACATCACAGGTCATTCCTTTGACGTTGATGGGGGGATTGC
GATTGGCTCGACTTAAGCGAGGAGGACGAGGGAGGGAGGGAGGAGGGAGA
AGGGAGGAAGGGAGGGATCGAGGATTTCATAGGGTGGGTGGATGTGATCG
TTATTTGTGCTCTTTGTTTCTTGCGATGTGTGTGGTAGGTAAAGTGTTAT
TTGTGCTCTCTTTCTTGAGATGTGCGTGGTAGGTAAAGTGTGTGTGTGTA
TGTGTGTGTTTGCGTGCATGTTTGGAACGCTTGGGAGTGATCAGGAGAAG
CGAGGGAGGGTAAGGAACGCGGAGCTGTGGCGCTGCCGTCGTGATGGCGG
GATTGCGTTTAGCCGAGGACGGGGGAGGAGACTTTTCCCCTCCTTTTTAA
AACACGAAAAGGAAAAAAAAATTGGTCCTTTGCCAATA

protein sequence of NO12G03960.1

>NO12G03960.1-protein ID=NO12G03960.1-protein|Name=NO12G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MLARALALTTLVMLSSSSLAFVPPAFRATARSSGAMRMMAAAAGEKVDVA
IVTGGSRGIGKACALELAKYGVKVVVNYASSAESALAVVEEIKALGSEAV
AIKADMSKPAEVDALFKETAAAFKDPVSILVNNAGITKDGLVLTMKPENW
QAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAA
AKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPL
GRLGKSSEVAGMVRFLAIDPAALYITGHSFDVDGGIAIGST*

mRNA from alignment at chr12:1136175..1139235-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G03960.1 ID=NO12G03960.1|Name=NO12G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3061bp|location=Sequence derived from alignment at chr12:1136175..1139235- (Nannochloropsis oceanica)
TCCTTCTATACTTTTTTCTCTCCAAAACTTCGCGCGTTCGATATTTTTTC
CTTTTCATTTGATCATCCATGTACATTTTCACCCACATCCTCTTCTGCTC
CCTCGTCTGCTCCTCATTTCCCCCTGCCGGCATCGACCATTTTCCGTAGC
TCCTCGACCTCTTTCCGTTGCTTCTCCAGGTTCACTCGCTTCTGTTCCTT
CTCTGGGTGAAAGTACAGGACCACCAAATACCGGCCGCATACGTTGAAGC
CATTCAAGTGCTCGAGGGCGTCCTTGGCATCGTAAATATCCTCGTAGATG
ACAAAGGCCTTGCCGCGATTCTCGTTTGCGGCACCAACGCGTATCTGGGC
GTAGGGGGAGGGAAAGGGAGGATGCGGAAACACGAGAAAAGGAGGAAAGT
ATTCCGTGCCGTGAGCAAAAGAGGTAGGGGAACCGTGACTCGTTGCCGTA
AACCGGAGAAGAGAGCAGAACCAAGGGGCGATACACGCCAACATGCCCCA
TTGACCGCGCGAGTCACTCAAATCCGGCAATGATATGCAAAAGTGCAGGA
AACTCGCATGTATGGCATCACATCCCTTCACACTCACCCTCCTGCTGCGT
TCTCTCCCTCCCACCCCAAAACTCTCAAGACGTACCTGTCTGATTGGACC
GTACTTGCCAAAGATATCGTAAAGTTCATCCGAAGAGAGTTTAAAGGGCA
GGTTACGCACGTACAGGATGCGGGTCACGTCGGGCGACAGGCGGTTCCGC
TGCCGGAAGTTAGCGGCGTCGGCCATCTGTGTTGTGATGTTGGGTGCGAC
ACGGAAGGAGGAAGGATGGAGGGTGACGATGATGCGTTTGGTTTTTGGTG
AGAGCGGGGCAAGGGAGGCTGGTACGGGGGATGAGGCTGGGCAGGGAGCA
CTAGCACACTTTCATGCACTCACAAGCCACACAGCCATAGACAGATGACA
AACCCGGCTTATGAGGCCAGGCAACAGACAACAGGACAGGGCGTGAACGG
GAGAAGCTGGGCGTCTCCGGTCATCATTTATGTCTCAATCTACGTGTCCT
CCCTCGTCGCCAAGCCGATCACCAAACAACAGACGAGGCAATTCTGTCTA
TCACAAACCACCTACAGCCACCGCTATCGGCTGCGTTATGCCCCCCACCT
TACCAAGCAGACATAAAACGCTGCTATTCAGCCCCTTGCCGCTGCGATGG
GCTTCACAATCCACAACGGGTGGTCCCTCCTTACCGCTGCGACGAGAGAC
ACGAGCAACGTCGCCCGTGACGAGACGCGTCCAAACCCGCGCCAGACAAA
ACTCTCACCCTCTTCACGCCGCCATCCCACGCACTACCTGCGACAGGCTC
TAATTCTAAGCCAAGGCTGAACTTGCCCTTCTACGCAGAAATGCTTGCCC
GCGCCCTCGCCCTAACGACGCTCGTCATGCTCTCCTCCTCCTCCTTGGCC
TTTGTTCCCCCCGCCTTCCGTGCCACGGCCCGCAGCAGCGGTGCCATGCG
CATGATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCCATTGTGACAG
GAGGATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCTCGCCAAGTAC
GGTGTGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGTCTGCTCTGGC
CGTGGTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTGGCCATTAAGG
TATACAGCGGCGGTATTTGGGAAACAATCGAGACGGAATGGCAATATATA
GTGTTATATTTAATATTTCCTCCCTTTCTACCCTCCCTTTCCTCTAGGCC
GATATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAAGGAGACCGCCGC
GGCCTTCAAGGACCCCGTATCCATTCTTGTCAATAACGCCGGCATCACCA
AGGACGGTACGTATTTATGGATTCGTTGATTTGTTCGTCCATTCTTGTCT
CTCGTAAGGGCCTTGCTCCCCCCTTCCTCTGCCTCATCTCTTCAATTTCC
CACCACCTAACCCTTCTTCCCTTCCTAAGGCCTGGTCCTGACCATGAAGC
CCGAGAACTGGCAAGCCGTGATCGATATCAATCTTTCCGGTGTTTTCTAC
GCCTCCAAGGCTGCCGCGTCCGTCATGCTCCGAGCCCGGCGCGGCCGCAT
CATCAACATGGCCTCGGTTGTCGGCCAGATCGGGAATCCTGGACAGGTGG
GTGTGCGCTTCTTTCTCTTCTTCTTACATCTGCTTTTTTTCGTCACGATT
TCTGCACTTAGCCCTCCTCTTTCCCCTTGCATCGGCCCACTCAAATTCTC
TACAGCCCAAAACAACAAGTACCCACCACCTCTCCCTCTCTCCTTCTCTC
CCTCCATTCCTCTCTCCCTCCCTCCCTTTCTTCCGATACCCCGCCCAGGC
CAACTATGCGGCGGCTAAAGGCGGTGTCCTGGGCCTGACTAAGGCCAACG
CCAAGGAGTTCGCGGCGCGTGGGGTGACGGTCAACGCGGTCTGCCCCGGG
TTCATCGAGAGTGACATGACAGAAAAGCTGGACTTAGACGGAATCAAGAA
GGCGATCCCGTTGGGGAGGCTGGGGAAGTCGAGCGAGGTGGCCGGCATGG
TGCGTTTCTTGGCGATTGACCCGGCGGCGCTGTACATCACAGGTCATTCC
TTTGACGTTGATGGGGGGATTGCGATTGGCTCGACTTAAGCGAGGAGGAC
GAGGGAGGGAGGGAGGAGGGAGAAGGGAGGAAGGGAGGGATCGAGGATTT
CATAGGGTGGGTGGATGTGATCGTTATTTGTGCTCTTTGTTTCTTGCGAT
GTGTGTGGTAGGTAAAGTGTTATTTGTGCTCTCTTTCTTGAGATGTGCGT
GGTAGGTAAAGTGTGTGTGTGTATGTGTGTGTTTGCGTGCATGTTTGGAA
CGCTTGGGAGTGATCAGGAGAAGCGAGGGAGGGTAAGGAACGCGGAGCTG
TGGCGCTGCCGTCGTGATGGCGGGATTGCGTTTAGCCGAGGACGGGGGAG
GAGACTTTTCCCCTCCTTTTTAAAACACGAAAAGGAAAAAAAAATTGGTC
CTTTGCCAATA

Coding sequence (CDS) from alignment at chr12:1136175..1139235-

>NO12G03960.1 ID=NO12G03960.1|Name=NO12G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr12:1136175..1139235- (Nannochloropsis oceanica)
ATGCTTGCCCGCGCCCTCGCCCTAACGACGCTCGTCATGCTCTCCTCCTC
CTCCTTGGCCTTTGTTCCCCCCGCCTTCCGTGCCACGGCCCGCAGCAGCG
GTGCCATGCGCATGATGGCGGCGGCAGCCGGCGAAAAGGTGGATGTGGCC
ATTGTGACAGGAGGATCTCGCGGGATCGGCAAAGCCTGCGCGTTGGAGCT
CGCCAAGTACGGTGTGAAGGTGGTGGTGAACTACGCCTCCTCGGCCGAGT
CTGCTCTGGCCGTGGTGGAAGAGATTAAAGCCCTGGGGTCCGAGGCCGTG
GCCATTAAGGCCGATATGTCCAAGCCCGCCGAGGTGGATGCCCTGTTCAA
GGAGACCGCCGCGGCCTTCAAGGACCCCGTATCCATTCTTGTCAATAACG
CCGGCATCACCAAGGACGGCCTGGTCCTGACCATGAAGCCCGAGAACTGG
CAAGCCGTGATCGATATCAATCTTTCCGGTGTTTTCTACGCCTCCAAGGC
TGCCGCGTCCGTCATGCTCCGAGCCCGGCGCGGCCGCATCATCAACATGG
CCTCGGTTGTCGGCCAGATCGGGAATCCTGGACAGGCCAACTATGCGGCG
GCTAAAGGCGGTGTCCTGGGCCTGACTAAGGCCAACGCCAAGGAGTTCGC
GGCGCGTGGGGTGACGGTCAACGCGGTCTGCCCCGGGTTCATCGAGAGTG
ACATGACAGAAAAGCTGGACTTAGACGGAATCAAGAAGGCGATCCCGTTG
GGGAGGCTGGGGAAGTCGAGCGAGGTGGCCGGCATGGTGCGTTTCTTGGC
GATTGACCCGGCGGCGCTGTACATCACAGGTCATTCCTTTGACGTTGATG
GGGGGATTGCGATTGGCTCGACTTAA

Synonyms

Publications