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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:1080235..1084473 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03860.1 ID=NO12G03860.1|Name=NO12G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=3900bp
GCGGGGCGCGGATTGATTCTTTGAGTGACATAGATGAGCTGCTTCTAAAA
AAAGGTCTTCTGGTGAACTAGGCCGGACTTGACGGCGTACTACACCCTGG
GAGGCTTTCAATTATGAGTGCCGAAGCAGACCGACATCGTGCGGTGCAGA
GCATCACATCCCCAAGAGCAGGGCGCTCAGGTCTTGGGTATGCTCTTCTA
TCTCGGAGCTCTACCTCATGTATGCCCGTCCTCTACCTGAAAAATATTAG
CACAAGCTGACTGCCTGTCCATCTTATGTTCCCGCGCGCATTGCTTGTAT
GACCCAACAACTGATCTCTCATCTCTCCCACCGTAGTCGTTGTTTGGCCA
GCCGCAAAAGCCAACTTCAAAATCCTCGACCGACAAGTAACTGGTCCACT
GAAACCATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAA
AGCTATCTTTCTTTCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCT
GGGTTGGTCTCTTGACCGAAGGCTGGCAACTCGTCAAGCTCCAAGGCTTC
GGAATCCAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGG
TACCTACACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCG
AGATTGATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATC
GTCCTGGCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGG
GTATTGTGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTG
CGGCGTATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTC
TGGAAGTCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGG
CTGCAGTGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACT
ACGCTTGGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTG
GTCTCATTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCA
AACAGCAACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTA
ATGCTGTTGCGTCGAGGAATGGAGGGAAAAGGGGGGAAAAGTTAGCTGAA
ATTGAGCAGGTGGAAGACGATGCAATTATTGGACAGGAGGAGGGGAGTAG
AGGGTCACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGA
TTGGTGGTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTA
TCGTACATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAA
TCCGTAGAGCGATGAAGGGAGGAAAGGAGGGGGGAAGGGTAAAGGGTGTT
TGCAAGATCATAAGGTGAAATGAAAGACCGAAATAGAGATGCTTTTGTAA
TTATAGGATTGTATTGCGTGTGAGCGGCAACCTCCCTTCATACGGAAAGA
TGTATGAAAAAGAGACGGACAGCATGGCGTAAGATCATAAATGAAAGAGA
GATAGACGGTATGGAATTTTGGGTTGTAGGGGTGGTAGAGAAGTTGGGAA
CGAGGAGACGCGAAGCACAATGGGTGGACTTAAACACGGCAGTCGAAAGG
GAGCACCGCTTGAGTCGATTAGCATATAATAGAGTTTGTGAATAAGCTAT
ACCTTCTCCTGTCATCCTTCGTCGCATGGTGAGAGAGTAAGATCAAACGC
GTCTCAACTAAGTGTACAAAAGAGATCTGTTTGAGAGGTAGAGTACCCAT
CACGGAACAAAACCTGTCCACAGCCATTATCAGTCGCACCAATTTCAGAA
GCATAATGGCAATGGTAAACGACGACAAAGGAAGAGGAAGAAAAAGTAAT
GCAAACAGTGGGGTCATCTACGTCCACGCTATTCTAATGATCTTCCTGCT
CTCGATTCCTGGTTGTAAAATTCTACTTCCGATTCTCTGTGCCCATTCGT
TTATTTACACCTATACATACACGCCTATTCTTTTTCTATAGTTTCACCCT
GCTCTAATCACCAACTATTCACCCCCACCTCACCCCCCGCCCGCCCTACA
ACCCGCGGCGCACTCATCAGAACGCTTTACTTTCTCCCTCTCCGCCATCC
ATGCCTACTTACACACTTGCAGATCCCCACCACCCGCTCTCCCTTGCATC
AGGCTCTTTCTCAAGTCACTACCGTCGCTAAGCCCCTTATTCCCTTTTCC
CTCACCTACGTCGTCGCAACCGCTTAAGTCAAGCGTGCCAATGCCCGGGC
GAACCTTGCAAGCCCCTCCTCAATCTTCTCCGGACTCGCCGTCGCAAATG
TCGCGCGGAATGCAGGCTCTGCATCCTTGCCTGGTGACGGGTCAAACGCG
TACCCTGGTACCATCAATATGTCCTCCGCCAACAAACCCTCCAACACCGC
CTCTGTCTCCGCCTTTCCCTTCCCCCTCAGCGCTGTCACCTTGAACAGCA
CAAACATACCTGCCTTGGGCAAGTCCCAAGTTGCAAGTCCTCGCAAGTGC
TTCTCTGCAGCGTGATGCATCGCGCGTCGTTGCCGCGCGTAGTGCGCTTG
TAACTGTTTCAAATGTGCGTCCAATCCGGCATGGCCCCACTGCTTGAGCA
TCGAACAAAACACAGATTGCGAGACTGTGCAGGGAAACTGAATAGTTAGC
TCGTTCCACTTCCGATATGCGCCCTCCACGAACGCCTTGGGACCCGTGAG
CCACCCGAGGCGTAAACCAGGACACACCCATTTCGACAAGGATTCCAAGT
GAATTACGCGCCCGTCCACATCCAAGCTGAGCAATGACTTGGGCAGCCCC
TCCAAACCCGGCATGGCGGTTTCCGTCACCTCCTCAGGGTCAGCGGGAAG
AAAAAGAAGACGGTAGGGATCGTCCTCCACAATCAGCAGGTCGTGTTTTT
GCGCCAGCGCGTACAAAACTTCCTTCCTTTCCGTCGACAAGGACGTACCT
GTCGGGTTCTGTCCGTGCGGGGTCAAGTACAGAAACGCCGCTCGCTCCCC
TTCCTCGGCAAGCTGCAGACACGCTGTGTCCAGCGCGAAAGGCAACATGC
CGTCGCTGTCGAGCTCAAGACCACGCACCTCGTACCCCAGGGGTGCCGCA
ATGGCCAGAACGGCTGCCCACACCAAAGCCTCGGCCAGAATGATGGGTTT
CTTCCCCGGTGGGGGCATGAAAAGCTGGAAGCATTTGGTCAGAGCATCCG
TCGAGCCGGTAGTGGGAATGACAGCCCAATCATCGTACGCCGGTGTGTGG
TATCGCCGCATGTGAGTGATCAGTTCCTGGCGCAGCTCCGGCATTCCCGT
GCCTTGCATGTAGTTCAGCGGCAAGTCCGCTGCCCCGTCCTCTGTCTCAG
TCCCTCCCGTCAGAGTCCGGTTCTTGAGCGTGATGGTACTCCCATTGGTC
ATGTCCCAGGTCACGCCGCGAAACACAAACGTCGACTCGTGCGGGATACC
GCCAGCAAGGGAAATGGAAGCCGAAGTTGCCCGAGCGGCAATCGTCTTGA
TCAAGGATCCTTCCAAACGTTGAAATTGTGGGGCCAGGCGCTTACTGGTT
TGGTCAAGCGACATGGTAACTTGAATAAGTTTCGGGGCTGTGATGTGGTG
TATGGTGTACGACGTTGGTGTTTGTGGTGAGACATTGTGACGGTGTCAAT
GTGAAAGAACATGACGTGCGAGCTGGACGGTAGTGACATTGGAGCCAAGG
CGAGGAAGGAAGAAGCGGGTATCACAAGAGACACTTATGCAAATTAATGC
CTTATTCACGATACGAACAAGGGGCATGCCTACATGTTGCTGTGCGCGTG
TATGTTGTTTTTGGATGAGTGTGTCCAAAGTCTCCGCCTCTACGGAAGTC back to topprotein sequence of NO12G03860.1 >NO12G03860.1-protein ID=NO12G03860.1-protein|Name=NO12G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MTQQLISHLSHRSRCLASRKSQLQNPRPTSNWSTETMSLCGWFSRMETNA
KAIFLSRLSWLLSFSLIWVGLLTEGWQLVKLQGFGIQETVQYGLWRIRYT
GTYTYTSDFIDWEPEVAEIDATAYPRVQATRACIVLALMALSLQFLVALR
GYCARSYKVQRVCTISCAAYASADLAFTLSAILVWKSISEEAFHVVCSRE
GCSVSPLEADAFQMTPYYAWGFTIVKLILSFPGVVSLIYLGIVSSSSSSS
QTATEMPVVTAVGGTAANAVASRNGGKRGEKLAEIEQVEDDAIIGQEEGS
RGSPKTADSFGSTDSKKIGGKKGNGDVFDRNAHVSYILGGATGDPNPAWL
NP* back to topmRNA from alignment at chr12:1080235..1084473+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03860.1 ID=NO12G03860.1|Name=NO12G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=4239bp|location=Sequence derived from alignment at chr12:1080235..1084473+ (Nannochloropsis oceanica)
GCGGGGCGCGGATTGATTCTTTGAGTGACATAGATGAGCTGCTTCTAAAA
AAAGGTCTTCTGGTGAACTAGGCCGGACTTGACGGCGTACTACACCCTGG
GAGGCTTTCAATTATGAGTGCCGAAGCAGACCGACATCGTGCGGTGCAGA
GCATCACATCCCCAAGAGCAGGGCGCTCAGGTCTTGGGTATGCTCTTCTA
TCTCGGAGCTCTACCTCATGTATGCCCGTCCTCTACCTGAAAAATATTAG
CACAAGCTGACTGCCTGTCCATCTTATGTTCCCGCGCGCATTGCTTGTAT
GACCCAACAACTGATCTCTCATCTCTCCCACCGTAGTCGTTGTTTGGCCA
GCCGCAAAAGCCAACTTCAAAATCCTCGACCGACAAGTAACTGGTCCACT
GAAACCATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAA
AGCTATCTTTCTTTGTAAGTCTCCCTCTTCCTGAATGTCTGCTCTTGGTG
GACGCCATTGCAGCATGCTCTGTCATTATGGGGCCTGACGTTCACAATTA
TTGGGTCCTGGTCGCATCGGCAAATCACTTCCCTCTCCAATATCTACACA
TCCACACTCCACAGCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCT
GGGTTGGTCTCTTGACCGAAGGTACGTGAATGCATGCTCAGTGTGTCTCT
TCGTATGCTTTAGTCCTAATTCATCCTTTGACGGGTGTCCATCCCTATCG
TCCCTATCGTAGTCCTTTCTCTCATGTTTGCTTTGCTTCCACCATTTCTC
AGCCTTTCATATCCCTCTTTTCCCCATTCTCATCACCCAATGAACCCAAC
CCTTTCACAGGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAATCCAAGA
GACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACCTACACCT
ACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGATTGATGCA
ACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCCTGGCCCT
CATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTATTGTGCTC
GGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGCGTATGCG
TCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGAAGTCCAT
CTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGCAGTGTCT
CCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGCTTGGGGT
TTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCTCATTGAT
TTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACAGCAACGG
AGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGCTGTTGCG
TCGAGGAATGGAGGGAAAAGGGGGGAAAAGTTAGCTGAAATTGAGCAGGT
GGAAGACGATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGGTCACCCA
AGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGGTGGTAAG
AAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGTACATTTT
GGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCGTAGAGCG
ATGAAGGGAGGAAAGGAGGGGGGAAGGGTAAAGGGTGTTTGCAAGATCAT
AAGGTGAAATGAAAGACCGAAATAGAGATGCTTTTGTAATTATAGGATTG
TATTGCGTGTGAGCGGCAACCTCCCTTCATACGGAAAGATGTATGAAAAA
GAGACGGACAGCATGGCGTAAGATCATAAATGAAAGAGAGATAGACGGTA
TGGAATTTTGGGTTGTAGGGGTGGTAGAGAAGTTGGGAACGAGGAGACGC
GAAGCACAATGGGTGGACTTAAACACGGCAGTCGAAAGGGAGCACCGCTT
GAGTCGATTAGCATATAATAGAGTTTGTGAATAAGCTATACCTTCTCCTG
TCATCCTTCGTCGCATGGTGAGAGAGTAAGATCAAACGCGTCTCAACTAA
GTGTACAAAAGAGATCTGTTTGAGAGGTAGAGTACCCATCACGGAACAAA
ACCTGTCCACAGCCATTATCAGTCGCACCAATTTCAGAAGCATAATGGCA
ATGGTAAACGACGACAAAGGAAGAGGAAGAAAAAGTAATGCAAACAGTGG
GGTCATCTACGTCCACGCTATTCTAATGATCTTCCTGCTCTCGATTCCTG
GTTGTAAAATTCTACTTCCGATTCTCTGTGCCCATTCGTTTATTTACACC
TATACATACACGCCTATTCTTTTTCTATAGTTTCACCCTGCTCTAATCAC
CAACTATTCACCCCCACCTCACCCCCCGCCCGCCCTACAACCCGCGGCGC
ACTCATCAGAACGCTTTACTTTCTCCCTCTCCGCCATCCATGCCTACTTA
CACACTTGCAGATCCCCACCACCCGCTCTCCCTTGCATCAGGCTCTTTCT
CAAGTCACTACCGTCGCTAAGCCCCTTATTCCCTTTTCCCTCACCTACGT
CGTCGCAACCGCTTAAGTCAAGCGTGCCAATGCCCGGGCGAACCTTGCAA
GCCCCTCCTCAATCTTCTCCGGACTCGCCGTCGCAAATGTCGCGCGGAAT
GCAGGCTCTGCATCCTTGCCTGGTGACGGGTCAAACGCGTACCCTGGTAC
CATCAATATGTCCTCCGCCAACAAACCCTCCAACACCGCCTCTGTCTCCG
CCTTTCCCTTCCCCCTCAGCGCTGTCACCTTGAACAGCACAAACATACCT
GCCTTGGGCAAGTCCCAAGTTGCAAGTCCTCGCAAGTGCTTCTCTGCAGC
GTGATGCATCGCGCGTCGTTGCCGCGCGTAGTGCGCTTGTAACTGTTTCA
AATGTGCGTCCAATCCGGCATGGCCCCACTGCTTGAGCATCGAACAAAAC
ACAGATTGCGAGACTGTGCAGGGAAACTGAATAGTTAGCTCGTTCCACTT
CCGATATGCGCCCTCCACGAACGCCTTGGGACCCGTGAGCCACCCGAGGC
GTAAACCAGGACACACCCATTTCGACAAGGATTCCAAGTGAATTACGCGC
CCGTCCACATCCAAGCTGAGCAATGACTTGGGCAGCCCCTCCAAACCCGG
CATGGCGGTTTCCGTCACCTCCTCAGGGTCAGCGGGAAGAAAAAGAAGAC
GGTAGGGATCGTCCTCCACAATCAGCAGGTCGTGTTTTTGCGCCAGCGCG
TACAAAACTTCCTTCCTTTCCGTCGACAAGGACGTACCTGTCGGGTTCTG
TCCGTGCGGGGTCAAGTACAGAAACGCCGCTCGCTCCCCTTCCTCGGCAA
GCTGCAGACACGCTGTGTCCAGCGCGAAAGGCAACATGCCGTCGCTGTCG
AGCTCAAGACCACGCACCTCGTACCCCAGGGGTGCCGCAATGGCCAGAAC
GGCTGCCCACACCAAAGCCTCGGCCAGAATGATGGGTTTCTTCCCCGGTG
GGGGCATGAAAAGCTGGAAGCATTTGGTCAGAGCATCCGTCGAGCCGGTA
GTGGGAATGACAGCCCAATCATCGTACGCCGGTGTGTGGTATCGCCGCAT
GTGAGTGATCAGTTCCTGGCGCAGCTCCGGCATTCCCGTGCCTTGCATGT
AGTTCAGCGGCAAGTCCGCTGCCCCGTCCTCTGTCTCAGTCCCTCCCGTC
AGAGTCCGGTTCTTGAGCGTGATGGTACTCCCATTGGTCATGTCCCAGGT
CACGCCGCGAAACACAAACGTCGACTCGTGCGGGATACCGCCAGCAAGGG
AAATGGAAGCCGAAGTTGCCCGAGCGGCAATCGTCTTGATCAAGGATCCT
TCCAAACGTTGAAATTGTGGGGCCAGGCGCTTACTGGTTTGGTCAAGCGA
CATGGTAACTTGAATAAGTTTCGGGGCTGTGATGTGGTGTATGGTGTACG
ACGTTGGTGTTTGTGGTGAGACATTGTGACGGTGTCAATGTGAAAGAACA
TGACGTGCGAGCTGGACGGTAGTGACATTGGAGCCAAGGCGAGGAAGGAA
GAAGCGGGTATCACAAGAGACACTTATGCAAATTAATGCCTTATTCACGA
TACGAACAAGGGGCATGCCTACATGTTGCTGTGCGCGTGTATGTTGTTTT
TGGATGAGTGTGTCCAAAGTCTCCGCCTCTACGGAAGTC back to topCoding sequence (CDS) from alignment at chr12:1080235..1084473+ >NO12G03860.1 ID=NO12G03860.1|Name=NO12G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr12:1080235..1084473+ (Nannochloropsis oceanica)
ATGACCCAACAACTGATCTCTCATCTCTCCCACCGTAGTCGTTGTTTGGC
CAGCCGCAAAAGCCAACTTCAAAATCCTCGACCGACAAGTAACTGGTCCA
CTGAAACCATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCC
AAAGCTATCTTTCTTTCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGAT
CTGGGTTGGTCTCTTGACCGAAGGCTGGCAACTCGTCAAGCTCCAAGGCT
TCGGAATCCAAGAGACCGTCCAATATGGCCTCTGGCGCATCAGATATACC
GGTACCTACACCTACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGC
CGAGATTGATGCAACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCA
TCGTCCTGGCCCTCATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGT
GGGTATTGTGCTCGGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTG
TGCGGCGTATGCGTCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGG
TCTGGAAGTCCATCTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAG
GGCTGCAGTGTCTCCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTA
CTACGCTTGGGGTTTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGG
TGGTCTCATTGATTTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCT
CAAACAGCAACGGAGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGC
TAATGCTGTTGCGTCGAGGAATGGAGGGAAAAGGGGGGAAAAGTTAGCTG
AAATTGAGCAGGTGGAAGACGATGCAATTATTGGACAGGAGGAGGGGAGT
AGAGGGTCACCCAAGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAA
GATTGGTGGTAAGAAGGGAAATGGAGACGTGTTCGATAGGAACGCACATG
TATCGTACATTTTGGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTA
AATCCGTAG back to top
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