NO12G03610.1, NO12G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03610.1
Unique NameNO12G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1190
Alignment locationchr12:988795..989984 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:988795..989984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03610.1 vs.
Match: EWM25683.1 (hypothetical protein Naga_100327g2 [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 6.600e-44
Identity = 149/323 (46.13%), Postives = 186/323 (57.59%), Query Frame = 0
Query:   45 RSTSAASPASPPSASRTSGKKHASAAVSIACISQDSPTLTVAVGLASAGKGENGKGRQKRAVSSPSAFSPQHSSSPSSPSKKAKTTHSKSGTLNRSMEEANSSSSTNNFL-------------------NNT--LPCRGKRADGDPCQRKAKGDCVHGCCVNCCGKICDAAVTQSAAARSLSSAPSSSLSLCPAHAKVHRQRKEEEALLSNPINAETSEDRWGGKDESGRVRVEQGHYKEPSIEWVGDTVVIFSLRDFLRESKWSKEALEQGLRRRRGRRTMG-QGKEFGKE-----GVRTERERKLRRACFEKKVEELVAKA 341
            RS++A SP     +S   GK+    A         SPT        S+ K ++ K RQ  ++SSPS  SP+   S SS S+ +  + S      RS  + + S S+++                     NN   LPC+GKRADG  CQRKAK DC  GCC+ CC K CD +V        +S A  S  S CP HAK+H+QRKEEEALL+ PI A+TSE+RWGGK+   R+RVE G YKE SIEWVGDTVVIFSLRDFLR SKW K+ALEQGLRRRR RR+ G +GKE G++     GV   R R      FE K++EL+ KA
Sbjct:    6 RSSTAPSPRFACLSSPLPGKRTQHTA---------SPTPL------SSAKRKSLKARQN-SLSSPS--SPRGMFSSSSSSRVSACSPSSVLERKRSRRDISPSVSSSSSFHLRQKSKIIKSAVERITDDNNATCLPCKGKRADGAACQRKAKSDCAFGCCLICCRKRCDESVI-------ISMATVSPFSACPVHAKLHQQRKEEEALLAQPITAQTSENRWGGKET--RMRVENGLYKESSIEWVGDTVVIFSLRDFLRSSKWCKDALEQGLRRRRMRRSEGAEGKEGGRKKEIGGGVEARRTR------FEGKIKELILKA 295          
The following BLAST results are available for this feature:
BLAST of NO12G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25683.16.600e-4446.13hypothetical protein Naga_100327g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03610NO12G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03610.1NO12G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03610.1.cds1NO12G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03610.1 ID=NO12G03610.1|Name=NO12G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
TCGCTCATCCTGCGTTTTCTTCGACTGCTGTACACGTTATTTTGTGATTG
TCTTAGATGCAGCAAAGACTCCACAAATACACCCACAACCACAGCCAACC
GATGCTTCAGCGCAGCATAGCCAAGTCCTCCCCCTCCTCGACTGCTTCTC
TCCCACCTCCTCTTCCTCCTTCCCCGCTTACCCAACGCCGCAGTACCTCT
GCGGCCTCCCCTGCTTCCCCTCCTTCTGCCTCTCGCACCAGCGGTAAAAA
ACATGCCAGCGCAGCGGTCTCGATCGCATGTATATCACAAGATTCTCCTA
CTTTGACCGTTGCTGTTGGCCTGGCATCAGCTGGCAAGGGAGAAAATGGA
AAGGGACGGCAGAAACGAGCCGTCTCCTCCCCTTCCGCTTTCTCTCCCCA
GCATTCTTCCTCCCCCTCCTCCCCATCCAAAAAAGCGAAGACCACCCACA
GCAAAAGCGGCACGCTTAACCGGAGCATGGAGGAAGCCAACAGCAGCAGC
AGTACCAACAACTTTTTGAATAACACTCTCCCTTGCAGAGGCAAGCGGGC
AGATGGCGACCCCTGCCAACGCAAGGCCAAAGGTGATTGTGTACACGGTT
GCTGTGTCAATTGCTGTGGCAAGATCTGCGATGCTGCTGTCACGCAATCT
GCTGCAGCTCGCTCTTTATCCTCTGCCCCTTCCTCCTCTCTTTCCCTTTG
CCCTGCCCACGCCAAGGTCCACCGACAACGGAAGGAGGAAGAAGCCTTGC
TCTCCAACCCCATCAATGCCGAAACGAGCGAAGACCGATGGGGAGGAAAG
GATGAGTCAGGCCGGGTCAGAGTAGAACAAGGTCACTATAAAGAACCATC
AATTGAGTGGGTAGGTGACACGGTAGTCATCTTTTCGTTGCGGGATTTCT
TGAGGGAATCGAAGTGGAGCAAAGAGGCGCTAGAGCAGGGGTTGCGGCGA
AGGAGGGGGAGGAGGACGATGGGACAAGGAAAGGAGTTCGGGAAAGAGGG
TGTTAGGACCGAGAGGGAAAGGAAGCTGAGGAGGGCTTGCTTTGAGAAGA
AGGTGGAGGAGTTGGTTGCGAAGGCGAAGAATTCGGTCTAGACAGGCAAT
TCATTCTGTTGCAGGATAGAGGGAGAGAGGGGGATAAGAATCTAATTTTT
ACAGGTAAAGCTTCAGAAATTATAAGCCAGTTAAATCGAA
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protein sequence of NO12G03610.1

>NO12G03610.1-protein ID=NO12G03610.1-protein|Name=NO12G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MQQRLHKYTHNHSQPMLQRSIAKSSPSSTASLPPPLPPSPLTQRRSTSAA
SPASPPSASRTSGKKHASAAVSIACISQDSPTLTVAVGLASAGKGENGKG
RQKRAVSSPSAFSPQHSSSPSSPSKKAKTTHSKSGTLNRSMEEANSSSST
NNFLNNTLPCRGKRADGDPCQRKAKGDCVHGCCVNCCGKICDAAVTQSAA
ARSLSSAPSSSLSLCPAHAKVHRQRKEEEALLSNPINAETSEDRWGGKDE
SGRVRVEQGHYKEPSIEWVGDTVVIFSLRDFLRESKWSKEALEQGLRRRR
GRRTMGQGKEFGKEGVRTERERKLRRACFEKKVEELVAKAKNSV*
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mRNA from alignment at chr12:988795..989984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03610.1 ID=NO12G03610.1|Name=NO12G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at chr12:988795..989984+ (Nannochloropsis oceanica)
TCGCTCATCCTGCGTTTTCTTCGACTGCTGTACACGTTATTTTGTGATTG TCTTAGATGCAGCAAAGACTCCACAAATACACCCACAACCACAGCCAACC GATGCTTCAGCGCAGCATAGCCAAGTCCTCCCCCTCCTCGACTGCTTCTC TCCCACCTCCTCTTCCTCCTTCCCCGCTTACCCAACGCCGCAGTACCTCT GCGGCCTCCCCTGCTTCCCCTCCTTCTGCCTCTCGCACCAGCGGTAAAAA ACATGCCAGCGCAGCGGTCTCGATCGCATGTATATCACAAGATTCTCCTA CTTTGACCGTTGCTGTTGGCCTGGCATCAGCTGGCAAGGGAGAAAATGGA AAGGGACGGCAGAAACGAGCCGTCTCCTCCCCTTCCGCTTTCTCTCCCCA GCATTCTTCCTCCCCCTCCTCCCCATCCAAAAAAGCGAAGACCACCCACA GCAAAAGCGGCACGCTTAACCGGAGCATGGAGGAAGCCAACAGCAGCAGC AGTACCAACAACTTTTTGAATAACACTCTCCCTTGCAGAGGCAAGCGGGC AGATGGCGACCCCTGCCAACGCAAGGCCAAAGGTGATTGTGTACACGGTT GCTGTGTCAATTGCTGTGGCAAGATCTGCGATGCTGCTGTCACGCAATCT GCTGCAGCTCGCTCTTTATCCTCTGCCCCTTCCTCCTCTCTTTCCCTTTG CCCTGCCCACGCCAAGGTCCACCGACAACGGAAGGAGGAAGAAGCCTTGC TCTCCAACCCCATCAATGCCGAAACGAGCGAAGACCGATGGGGAGGAAAG GATGAGTCAGGCCGGGTCAGAGTAGAACAAGGTCACTATAAAGAACCATC AATTGAGTGGGTAGGTGACACGGTAGTCATCTTTTCGTTGCGGGATTTCT TGAGGGAATCGAAGTGGAGCAAAGAGGCGCTAGAGCAGGGGTTGCGGCGA AGGAGGGGGAGGAGGACGATGGGACAAGGAAAGGAGTTCGGGAAAGAGGG TGTTAGGACCGAGAGGGAAAGGAAGCTGAGGAGGGCTTGCTTTGAGAAGA AGGTGGAGGAGTTGGTTGCGAAGGCGAAGAATTCGGTCTAGACAGGCAAT TCATTCTGTTGCAGGATAGAGGGAGAGAGGGGGATAAGAATCTAATTTTT ACAGGTAAAGCTTCAGAAATTATAAGCCAGTTAAATCGAA
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Coding sequence (CDS) from alignment at chr12:988795..989984+

>NO12G03610.1 ID=NO12G03610.1|Name=NO12G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr12:988795..989984+ (Nannochloropsis oceanica)
ATGCAGCAAAGACTCCACAAATACACCCACAACCACAGCCAACCGATGCT
TCAGCGCAGCATAGCCAAGTCCTCCCCCTCCTCGACTGCTTCTCTCCCAC
CTCCTCTTCCTCCTTCCCCGCTTACCCAACGCCGCAGTACCTCTGCGGCC
TCCCCTGCTTCCCCTCCTTCTGCCTCTCGCACCAGCGGTAAAAAACATGC
CAGCGCAGCGGTCTCGATCGCATGTATATCACAAGATTCTCCTACTTTGA
CCGTTGCTGTTGGCCTGGCATCAGCTGGCAAGGGAGAAAATGGAAAGGGA
CGGCAGAAACGAGCCGTCTCCTCCCCTTCCGCTTTCTCTCCCCAGCATTC
TTCCTCCCCCTCCTCCCCATCCAAAAAAGCGAAGACCACCCACAGCAAAA
GCGGCACGCTTAACCGGAGCATGGAGGAAGCCAACAGCAGCAGCAGTACC
AACAACTTTTTGAATAACACTCTCCCTTGCAGAGGCAAGCGGGCAGATGG
CGACCCCTGCCAACGCAAGGCCAAAGGTGATTGTGTACACGGTTGCTGTG
TCAATTGCTGTGGCAAGATCTGCGATGCTGCTGTCACGCAATCTGCTGCA
GCTCGCTCTTTATCCTCTGCCCCTTCCTCCTCTCTTTCCCTTTGCCCTGC
CCACGCCAAGGTCCACCGACAACGGAAGGAGGAAGAAGCCTTGCTCTCCA
ACCCCATCAATGCCGAAACGAGCGAAGACCGATGGGGAGGAAAGGATGAG
TCAGGCCGGGTCAGAGTAGAACAAGGTCACTATAAAGAACCATCAATTGA
GTGGGTAGGTGACACGGTAGTCATCTTTTCGTTGCGGGATTTCTTGAGGG
AATCGAAGTGGAGCAAAGAGGCGCTAGAGCAGGGGTTGCGGCGAAGGAGG
GGGAGGAGGACGATGGGACAAGGAAAGGAGTTCGGGAAAGAGGGTGTTAG
GACCGAGAGGGAAAGGAAGCTGAGGAGGGCTTGCTTTGAGAAGAAGGTGG
AGGAGTTGGTTGCGAAGGCGAAGAATTCGGTCTAG
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Synonyms
Publications