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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:980138..983154 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03590.2 vs.
Match: EWM25684.1 (ribonucleases p mrp protein subunit pop1 [Nannochloropsis gaditana]) HSP 1 Score: 229.6 bits (584), Expect = 3.200e-56 Identity = 128/282 (45.39%), Postives = 176/282 (62.41%), Query Frame = 0
Query: 10 KRLETHLWHSKRYPRMNDIWNHRLAYSATRRPSKAPLRAAQKRCVIHDASYVQVLEIKGRIKEGIIKLASLFLDPADVELLEEGARERGERMGDFLMYGCRAFPREALGPARFLWRPVGREGGREEEMEEWRRLWVWLHPSFAAQVLEEIQEEVGREGGREGG-----EVEVGLAPDSLLFELRGPLSRALLQEVLIPCATTAIAGAAATGTISRDDVTGGGEVKQEEEEEETDKEGRK--RGQDWWAQLPPRLPHGTVLSLLVADPRERRGGGVRGGQQQQ 285
+RLETH+WHSKRYPRM D W +RLAY+ +R+PSKAPLRA ++C +HDASY++VLE++ ++ I+ + + F+DP+D L + G +MG+ ++Y AFP LGP R+LWRP GR G E W +W+W HP+FA ++ EE++E G EGGREGG +++ L PD L FE+RGPLSR + + + C A + GG EEEE KE RK +G++W LP RL HG+VL L V DPRERRGG GG+Q++
Sbjct: 40 RRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSE---WH-VWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSR---RSIEMACRPVFPFNAGTRNGL-------GG-----EEEEVAVKEARKEEKGEEW---LPERLEHGSVLCLSVIDPRERRGGREGGGEQER 299
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03590.2 ID=NO12G03590.2|Name=NO12G03590.2|organism=Nannochloropsis oceanica|type=mRNA|length=2941bp AGATAGGGAGACAGCCTTTCGGGTACTGGGCTTAACCATTAATTAACGAT GGCCCTCCAAGTCCTGGCGTTTGCCGAGAGCCGGCGACGAGAGCTGCTGG CCCTTCTTCGCAAGCGGAAGGCACTGGCCGAAACGTACTATCGGAAAGGG CGCGCCAAGGCAAAAGACGGAGGCGGCAAGGCCAGCCTCTTGCTACCCGT CCTTGTGGCCCAGCGGCGGCGTTTACGACGGCGGACCACTTCACATAACC GCCGACACCCGCGGGCACACAAAAAGGCGAAAAAAGAGAAGGCCGGGGAG TCCATCGACACCCTCCTCTTGTCCCGTGCCAAGCGCCGGAAGCTGTGAGT ACGCACGCAGCAGCCCCCTACCCCCCCTTTTTTTCATTGCTCGTGAAAAG CCATTACAAGCTCGTGCGCTTTTCAGTGCATCAAGTAAATATAAGACAGG CAACCCATTGCCTATTAGACGCCACTCTCCTTACCCACCCCATCAGTCTC CTACCTCACCTCCTCTTTCTGATTTCTCCTTTTCTTCATCCCTCCCTCCC TTGCTTTCCCACAGAGAGCGCAATGGCATGGCCGATCCCATCCCAGGCCG CGCCAAGCGCCTGGAGACGCACCTATGGCACAGCAAGCGCTACCCGCGCA TGAATGATATATGGAACCATCGTCTTGCCTATTCGGCGACCCGCCGACCT AGCAAGGCCCCTTTGAGGGCAGCACAGAAGCGGTGCGTGATTCACGATGC CTCTTATGTACAGGTCCTGGAGATAAAGGGTAGAATCAAAGAGGGTATTA TCAAGCTAGCCTCTTTATTCTTGGACCCAGCGGACGTTGAGTTATTAGAG GAGGGAGCGAGGGAGCGAGGGGAGAGGATGGGGGACTTCTTAATGTACGG CTGCCGAGCCTTTCCAAGAGAGGCATTGGGGCCCGCTCGATTCCTGTGGC GGCCGGTGGGAAGAGAGGGAGGGAGGGAGGAAGAGATGGAGGAATGGCGA CGGTTGTGGGTATGGCTGCACCCTTCGTTTGCCGCGCAGGTGTTGGAAGA AATTCAGGAGGAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGTGG AAGTCGGACTAGCGCCTGATTCACTCTTGTTTGAGTTGAGGGGACCTTTG TCTAGGGCGTTGCTCCAGGAAGTGTTGATTCCTTGCGCTACTACTGCTAT TGCAGGTGCTGCTGCGACTGGTACTATTTCTCGTGATGATGTGACTGGCG GGGGGGAGGTGAAGCAGGAAGAAGAGGAGGAGGAGACAGACAAGGAAGGG AGGAAGAGAGGGCAGGATTGGTGGGCACAGCTGCCACCTCGTCTTCCGCA TGGGACTGTGCTGTCCTTGCTAGTGGCAGATCCCCGAGAAAGACGAGGAG GAGGAGTAAGAGGAGGGCAGCAGCAGCAGCAGCAAGAGCTGGAGCAGCGG CAAGGGCAGCAAGTGCCACAACTGCACCTCCCTCCCTCCCTCCTTTGGGA CGCTGCGGCACATGCACGAGTAACCGAGCACGCGGGCGCTCGTCCCGATC ATGTGGTGAACGCGGAAAAGCAGGCAAGGAGGGAGGCAGAGGGAACATGG CAAGGCCTTTTACGCGGTGCCATCGACAAAGACGAGGCAATGGCAACAGC AGCAACAGCAGCAGCAACAGTAGCAGCTACAGCAAGTGCAACGACCCACA TTCCTCTCCTCTTGATCGCCCGTGGGGGGATTCACAGTAACGGCCTCTTC CTCGATGGCAACGGTCTAGGAGGATTCGACCTCCTCCTCCCCCGGGGGTG GGGGAAAGTGTTTTGGCATGCCATGATGCGCCGACAGGCACATCGGCTCT CTCTGCCTCTCACCCCCCTTCCCTTAGGGCTGAGGGAGAGAGAAGCGGTT GAGGGGGAATGGATGCTCCCCTCCTTCCCGAGATGCTTCCCCGAGACGAG GGAGGGAAGGAGGTGGTGGAAGGAGGGGAGGAGGGAGTGGAGGGAGAAGG AGGGCAAAAGGCCGAAAGGGAAGAGAAGGGAGTGGGGAGAAGAGCCCCCA TCTTTTTTGGGTGGGGAAAAGGAGGAATCGAAGGAGGAAAAGGAAGGGGG AGGGTTGGTGGTGATTCGACGGGCGGAGTGTCTGGAGGCGGCAGTGGCGG TTCCTGAGGCGAGAGGAGCATTCAAGGGAAGAATCTTTCCCCGTCTCAAT TTCTACAACAAATTCAGGGAATTGCGTTATCCCTCATCTCTTGAGGAGGA AGGGAAGGAAGGAGGGAAGAAAGGAGGCCGGGTGTTGTTGACGCCGTCTC CGTTAGCGATGTCTGGCTACTATGCAGCAGGGGTATTAAGGTGCCCGTGG ACGGGGAAGCCTGCGGCGTTGGCCCAGATCTACCTGCCATCATCGGAGGA TTATGGCGTGTGGAAAGCAGAGGAGGAGGGCAGAAAAGAGGGAGAAGAAG AAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGTGGGCGGGACTGCCAAAAACAAGCAACAACGTTTTGC TCCTTCCTCCCGCCCGGCGTCCCTCCCGCCCTCGTCCTCCTCCTCATCTT CATCCTTCGAGAGGCATCTATTAGGATGGACGACTGCAGGGGGCTTCTGT TTGAGGGAGGGAAAAGGCATGGCACTCGCCCTCCTCAGCATAGAAGTGTT GCGTCTGCTACAGTTCAGGGCGGGTGGGCAGGAGGGAGGGCGGGAGGGAG AGGGGGGGTGTCGGCGGCGATGGCGGCAGTAGTACTGGTGAGAAATCCTC GATCGACAATCATGTTTCCAGCCAGAATGGGGCTTCAGGTATCTTTTCAA TAGAGGGATGAGGTAAGGAATGAAGGAGGATATGGCATAGTTGAAATTAA AGCAAAAGTAAAAGTTGTTCGAAGGCGAAGAATCGAGGTGG back to topprotein sequence of NO12G03590.2 >NO12G03590.2-protein ID=NO12G03590.2-protein|Name=NO12G03590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp MADPIPGRAKRLETHLWHSKRYPRMNDIWNHRLAYSATRRPSKAPLRAAQ KRCVIHDASYVQVLEIKGRIKEGIIKLASLFLDPADVELLEEGARERGER MGDFLMYGCRAFPREALGPARFLWRPVGREGGREEEMEEWRRLWVWLHPS FAAQVLEEIQEEVGREGGREGGEVEVGLAPDSLLFELRGPLSRALLQEVL IPCATTAIAGAAATGTISRDDVTGGGEVKQEEEEEETDKEGRKRGQDWWA QLPPRLPHGTVLSLLVADPRERRGGGVRGGQQQQQQELEQRQGQQVPQLH LPPSLLWDAAAHARVTEHAGARPDHVVNAEKQARREAEGTWQGLLRGAID KDEAMATAATAAATVAATASATTHIPLLLIARGGIHSNGLFLDGNGLGGF DLLLPRGWGKVFWHAMMRRQAHRLSLPLTPLPLGLREREAVEGEWMLPSF PRCFPETREGRRWWKEGRREWREKEGKRPKGKRREWGEEPPSFLGGEKEE SKEEKEGGGLVVIRRAECLEAAVAVPEARGAFKGRIFPRLNFYNKFRELR YPSSLEEEGKEGGKKGGRVLLTPSPLAMSGYYAAGVLRCPWTGKPAALAQ IYLPSSEDYGVWKAEEEGRKEGEEEEEEEEEEEGGGGGGGGGGGGVGGTA KNKQQRFAPSSRPASLPPSSSSSSSSFERHLLGWTTAGGFCLREGKGMAL ALLSIEVLRLLQFRAGGQEGGREGEGGCRRRWRQ* back to topmRNA from alignment at chr12:980138..983154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03590.2 ID=NO12G03590.2|Name=NO12G03590.2|organism=Nannochloropsis oceanica|type=mRNA|length=3017bp|location=Sequence derived from alignment at chr12:980138..983154- (Nannochloropsis oceanica) AGATAGGGAGACAGCCTTTCGGGTACTGGGCTTAACCATTAATTAACGAT
GGCCCTCCAAGTCCTGGCGTTTGCCGAGGTAGGTGCTCCTTTGCGTTGCC
CCCCGATCGGATATGTTGTTGTTACCTCCCCAACCCGCGATTACCCAATT
CTAGAGCCGGCGACGAGAGCTGCTGGCCCTTCTTCGCAAGCGGAAGGCAC
TGGCCGAAACGTACTATCGGAAAGGGCGCGCCAAGGCAAAAGACGGAGGC
GGCAAGGCCAGCCTCTTGCTACCCGTCCTTGTGGCCCAGCGGCGGCGTTT
ACGACGGCGGACCACTTCACATAACCGCCGACACCCGCGGGCACACAAAA
AGGCGAAAAAAGAGAAGGCCGGGGAGTCCATCGACACCCTCCTCTTGTCC
CGTGCCAAGCGCCGGAAGCTGTGAGTACGCACGCAGCAGCCCCCTACCCC
CCCTTTTTTTCATTGCTCGTGAAAAGCCATTACAAGCTCGTGCGCTTTTC
AGTGCATCAAGTAAATATAAGACAGGCAACCCATTGCCTATTAGACGCCA
CTCTCCTTACCCACCCCATCAGTCTCCTACCTCACCTCCTCTTTCTGATT
TCTCCTTTTCTTCATCCCTCCCTCCCTTGCTTTCCCACAGAGAGCGCAAT
GGCATGGCCGATCCCATCCCAGGCCGCGCCAAGCGCCTGGAGACGCACCT
ATGGCACAGCAAGCGCTACCCGCGCATGAATGATATATGGAACCATCGTC
TTGCCTATTCGGCGACCCGCCGACCTAGCAAGGCCCCTTTGAGGGCAGCA
CAGAAGCGGTGCGTGATTCACGATGCCTCTTATGTACAGGTCCTGGAGAT
AAAGGGTAGAATCAAAGAGGGTATTATCAAGCTAGCCTCTTTATTCTTGG
ACCCAGCGGACGTTGAGTTATTAGAGGAGGGAGCGAGGGAGCGAGGGGAG
AGGATGGGGGACTTCTTAATGTACGGCTGCCGAGCCTTTCCAAGAGAGGC
ATTGGGGCCCGCTCGATTCCTGTGGCGGCCGGTGGGAAGAGAGGGAGGGA
GGGAGGAAGAGATGGAGGAATGGCGACGGTTGTGGGTATGGCTGCACCCT
TCGTTTGCCGCGCAGGTGTTGGAAGAAATTCAGGAGGAGGTGGGGAGGGA
GGGAGGGAGGGAGGGAGGGGAGGTGGAAGTCGGACTAGCGCCTGATTCAC
TCTTGTTTGAGTTGAGGGGACCTTTGTCTAGGGCGTTGCTCCAGGAAGTG
TTGATTCCTTGCGCTACTACTGCTATTGCAGGTGCTGCTGCGACTGGTAC
TATTTCTCGTGATGATGTGACTGGCGGGGGGGAGGTGAAGCAGGAAGAAG
AGGAGGAGGAGACAGACAAGGAAGGGAGGAAGAGAGGGCAGGATTGGTGG
GCACAGCTGCCACCTCGTCTTCCGCATGGGACTGTGCTGTCCTTGCTAGT
GGCAGATCCCCGAGAAAGACGAGGAGGAGGAGTAAGAGGAGGGCAGCAGC
AGCAGCAGCAAGAGCTGGAGCAGCGGCAAGGGCAGCAAGTGCCACAACTG
CACCTCCCTCCCTCCCTCCTTTGGGACGCTGCGGCACATGCACGAGTAAC
CGAGCACGCGGGCGCTCGTCCCGATCATGTGGTGAACGCGGAAAAGCAGG
CAAGGAGGGAGGCAGAGGGAACATGGCAAGGCCTTTTACGCGGTGCCATC
GACAAAGACGAGGCAATGGCAACAGCAGCAACAGCAGCAGCAACAGTAGC
AGCTACAGCAAGTGCAACGACCCACATTCCTCTCCTCTTGATCGCCCGTG
GGGGGATTCACAGTAACGGCCTCTTCCTCGATGGCAACGGTCTAGGAGGA
TTCGACCTCCTCCTCCCCCGGGGGTGGGGGAAAGTGTTTTGGCATGCCAT
GATGCGCCGACAGGCACATCGGCTCTCTCTGCCTCTCACCCCCCTTCCCT
TAGGGCTGAGGGAGAGAGAAGCGGTTGAGGGGGAATGGATGCTCCCCTCC
TTCCCGAGATGCTTCCCCGAGACGAGGGAGGGAAGGAGGTGGTGGAAGGA
GGGGAGGAGGGAGTGGAGGGAGAAGGAGGGCAAAAGGCCGAAAGGGAAGA
GAAGGGAGTGGGGAGAAGAGCCCCCATCTTTTTTGGGTGGGGAAAAGGAG
GAATCGAAGGAGGAAAAGGAAGGGGGAGGGTTGGTGGTGATTCGACGGGC
GGAGTGTCTGGAGGCGGCAGTGGCGGTTCCTGAGGCGAGAGGAGCATTCA
AGGGAAGAATCTTTCCCCGTCTCAATTTCTACAACAAATTCAGGGAATTG
CGTTATCCCTCATCTCTTGAGGAGGAAGGGAAGGAAGGAGGGAAGAAAGG
AGGCCGGGTGTTGTTGACGCCGTCTCCGTTAGCGATGTCTGGCTACTATG
CAGCAGGGGTATTAAGGTGCCCGTGGACGGGGAAGCCTGCGGCGTTGGCC
CAGATCTACCTGCCATCATCGGAGGATTATGGCGTGTGGAAAGCAGAGGA
GGAGGGCAGAAAAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGCGGGACT
GCCAAAAACAAGCAACAACGTTTTGCTCCTTCCTCCCGCCCGGCGTCCCT
CCCGCCCTCGTCCTCCTCCTCATCTTCATCCTTCGAGAGGCATCTATTAG
GATGGACGACTGCAGGGGGCTTCTGTTTGAGGGAGGGAAAAGGCATGGCA
CTCGCCCTCCTCAGCATAGAAGTGTTGCGTCTGCTACAGTTCAGGGCGGG
TGGGCAGGAGGGAGGGCGGGAGGGAGAGGGGGGGTGTCGGCGGCGATGGC
GGCAGTAGTACTGGTGAGAAATCCTCGATCGACAATCATGTTTCCAGCCA
GAATGGGGCTTCAGGTATCTTTTCAATAGAGGGATGAGGTAAGGAATGAA
GGAGGATATGGCATAGTTGAAATTAAAGCAAAAGTAAAAGTTGTTCGAAG
GCGAAGAATCGAGGTGG back to topCoding sequence (CDS) from alignment at chr12:980138..983154- >NO12G03590.2 ID=NO12G03590.2|Name=NO12G03590.2|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr12:980138..983154- (Nannochloropsis oceanica) ATGGCCGATCCCATCCCAGGCCGCGCCAAGCGCCTGGAGACGCACCTATG GCACAGCAAGCGCTACCCGCGCATGAATGATATATGGAACCATCGTCTTG CCTATTCGGCGACCCGCCGACCTAGCAAGGCCCCTTTGAGGGCAGCACAG AAGCGGTGCGTGATTCACGATGCCTCTTATGTACAGGTCCTGGAGATAAA GGGTAGAATCAAAGAGGGTATTATCAAGCTAGCCTCTTTATTCTTGGACC CAGCGGACGTTGAGTTATTAGAGGAGGGAGCGAGGGAGCGAGGGGAGAGG ATGGGGGACTTCTTAATGTACGGCTGCCGAGCCTTTCCAAGAGAGGCATT GGGGCCCGCTCGATTCCTGTGGCGGCCGGTGGGAAGAGAGGGAGGGAGGG AGGAAGAGATGGAGGAATGGCGACGGTTGTGGGTATGGCTGCACCCTTCG TTTGCCGCGCAGGTGTTGGAAGAAATTCAGGAGGAGGTGGGGAGGGAGGG AGGGAGGGAGGGAGGGGAGGTGGAAGTCGGACTAGCGCCTGATTCACTCT TGTTTGAGTTGAGGGGACCTTTGTCTAGGGCGTTGCTCCAGGAAGTGTTG ATTCCTTGCGCTACTACTGCTATTGCAGGTGCTGCTGCGACTGGTACTAT TTCTCGTGATGATGTGACTGGCGGGGGGGAGGTGAAGCAGGAAGAAGAGG AGGAGGAGACAGACAAGGAAGGGAGGAAGAGAGGGCAGGATTGGTGGGCA CAGCTGCCACCTCGTCTTCCGCATGGGACTGTGCTGTCCTTGCTAGTGGC AGATCCCCGAGAAAGACGAGGAGGAGGAGTAAGAGGAGGGCAGCAGCAGC AGCAGCAAGAGCTGGAGCAGCGGCAAGGGCAGCAAGTGCCACAACTGCAC CTCCCTCCCTCCCTCCTTTGGGACGCTGCGGCACATGCACGAGTAACCGA GCACGCGGGCGCTCGTCCCGATCATGTGGTGAACGCGGAAAAGCAGGCAA GGAGGGAGGCAGAGGGAACATGGCAAGGCCTTTTACGCGGTGCCATCGAC AAAGACGAGGCAATGGCAACAGCAGCAACAGCAGCAGCAACAGTAGCAGC TACAGCAAGTGCAACGACCCACATTCCTCTCCTCTTGATCGCCCGTGGGG GGATTCACAGTAACGGCCTCTTCCTCGATGGCAACGGTCTAGGAGGATTC GACCTCCTCCTCCCCCGGGGGTGGGGGAAAGTGTTTTGGCATGCCATGAT GCGCCGACAGGCACATCGGCTCTCTCTGCCTCTCACCCCCCTTCCCTTAG GGCTGAGGGAGAGAGAAGCGGTTGAGGGGGAATGGATGCTCCCCTCCTTC CCGAGATGCTTCCCCGAGACGAGGGAGGGAAGGAGGTGGTGGAAGGAGGG GAGGAGGGAGTGGAGGGAGAAGGAGGGCAAAAGGCCGAAAGGGAAGAGAA GGGAGTGGGGAGAAGAGCCCCCATCTTTTTTGGGTGGGGAAAAGGAGGAA TCGAAGGAGGAAAAGGAAGGGGGAGGGTTGGTGGTGATTCGACGGGCGGA GTGTCTGGAGGCGGCAGTGGCGGTTCCTGAGGCGAGAGGAGCATTCAAGG GAAGAATCTTTCCCCGTCTCAATTTCTACAACAAATTCAGGGAATTGCGT TATCCCTCATCTCTTGAGGAGGAAGGGAAGGAAGGAGGGAAGAAAGGAGG CCGGGTGTTGTTGACGCCGTCTCCGTTAGCGATGTCTGGCTACTATGCAG CAGGGGTATTAAGGTGCCCGTGGACGGGGAAGCCTGCGGCGTTGGCCCAG ATCTACCTGCCATCATCGGAGGATTATGGCGTGTGGAAAGCAGAGGAGGA GGGCAGAAAAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGCGGGACTGCC AAAAACAAGCAACAACGTTTTGCTCCTTCCTCCCGCCCGGCGTCCCTCCC GCCCTCGTCCTCCTCCTCATCTTCATCCTTCGAGAGGCATCTATTAGGAT GGACGACTGCAGGGGGCTTCTGTTTGAGGGAGGGAAAAGGCATGGCACTC GCCCTCCTCAGCATAGAAGTGTTGCGTCTGCTACAGTTCAGGGCGGGTGG GCAGGAGGGAGGGCGGGAGGGAGAGGGGGGGTGTCGGCGGCGATGGCGGC AGTAG back to top
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