NO12G03410.3, NO12G03410.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03410.3
Unique NameNO12G03410.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr12:935834..937957 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:935834..937957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03410.3 vs.
Match: XP_005853957.1 (hypothetical protein NGA_0432601 [Nannochloropsis gaditana CCMP526]; EKU22401.1 hypothetical protein NGA_0432601 [Nannochloropsis gaditana CCMP526]; EWM25697.1 Integral membrane protein TerC [Nannochloropsis gaditana])

HSP 1 Score: 491.1 bits (1263), Expect = 3.300e-135
Identity = 265/334 (79.34%), Postives = 293/334 (87.72%), Query Frame = 0 
Query:   81 APLPKWTTRRGGLQNPFRK----HKQTAPPVESTTSN--------KAPAVTKIDPAVAYSTAVRRTMLAVGAACAFGFGLWYIEGKKSAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPFEYQSRALTWGIVGAVAMRGVMISVGVAAIQRFRWVVLMFAGILLGSAFKLLAETGHEGGEEDLSDNLMLRVAKKCVNAVDEYDGNKFFTKRNGKRFATPLFMCLICIELSDFVFAVDSIPAVLGVSKDPLIVYSSNIFAIMALRSLYTLVATAVNTLEYIKPSVALVLAFVGGKMIAEFFHVEVPISVSLLVVMSLLGGGIGLSVLKQRFTAR 403
            A LP+W + RGGL  PFR+    H +TA  V+  +S         K+PA   ID   AY+TAVRRT+LAVGAA AFGFGLW++EG++ AMEFFAGYLIEESLSVDNIFVFIMLFEYFKVP EYQSRAL+WGI+GAVAMRG+MI VGVAAIQRFRWVVL+FAG+LLGSAFKLLAE GHEGGEEDLS+NL++  AKK V+AVDEYDG+ FFT+RNGKR+ATPLFMCLICIELSDFVFAVDSIPAVLGVSKDPLIVYSSNIFAIMALRSLYTLVATAVN+LEYIKPSVALVLAFVGGKM+AEFFHVEVPISVSL VVMSLLGGGIGLS+LKQR  AR
Sbjct:   49 AHLPQWVSSRGGLTLPFRQQQIAHAKTATVVKGPSSKGKAVGKRGKSPAA--IDAGEAYATAVRRTLLAVGAAFAFGFGLWFMEGRQPAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFRWVVLLFAGVLLGSAFKLLAEVGHEGGEEDLSNNLLVAWAKKLVHAVDEYDGDNFFTRRNGKRYATPLFMCLICIELSDFVFAVDSIPAVLGVSKDPLIVYSSNIFAIMALRSLYTLVATAVNSLEYIKPSVALVLAFVGGKMVAEFFHVEVPISVSLAVVMSLLGGGIGLSLLKQRVLAR 380
The following BLAST results are available for this feature:
BLAST of NO12G03410.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853957.13.300e-13579.34hypothetical protein NGA_0432601 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03410NO12G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03410.3NO12G03410.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03410.3.cds1NO12G03410.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03410.3.cds2NO12G03410.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03410.3.cds3NO12G03410.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03410.3 ID=NO12G03410.3|Name=NO12G03410.3|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGGTATGATTTAATAACTAT
CTTTACATGTGTAAGCGGTATGCCTTGGCCCCGTGTGGCTACCATCATCC
TCATTTCAAGTCGCACTCCCCTCTTCCAGTTCTTCCACACACGTCAGACC
CCTTCCAAGCTGAAATCCCCCTCCTTTTTGGGTGGCGTGTTAAAGCGTAA
CCCTAACCTTAAGAAAGATGAAATTTACAGGTGTATTTCCATTTTCGTTC
TTCCTCCCCCTTATTTATCAACAGAGCCCTTGGCTCCCGCATCCACCACC
TCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCA
AAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGA
CTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTAC
AGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTT
CGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTT
TTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTC
TTCATCATGCTGTTCGAGTACTTTAAGGTTCCCTTTGAATACCAATCGCG
TGCCCTAACGTGGGGAATTGTCGGGGCGGTCGCCATGCGGGGTGTGATGA
TCTCCGTGGGAGTGGCCGCGATTCAGAGGTTCCGATGGGTGGTGTTAATG
TTCGCCGGTATATTGCTGGGGAGCGCGTTCAAGCTGCTGGCGGAAACGGG
GCATGAAGGGGGGGAGGAGGATTTGAGCGACAACTTGATGTTGAGGGTGG
CGAAGAAATGTGTGAATGCCGTGGATGAGTACGATGGGAACAAGTTCTTC
ACGAAGAGGAACGGAAAGCGATTCGCGACGCCCCTGTTCATGTGCTTGAT
TTGTATTGAACTGTCAGATTTCGTGTTTGCCGTGGACTCCATTCCGGCGG
TGTTGGGCGTGTCCAAGGACCCCCTCATTGTCTACTCCTCCAACATCTTC
GCCATCATGGCCCTGCGTTCCCTCTACACGCTGGTGGCCACTGCTGTCAA
CACGCTCGAGTACATCAAGCCCTCTGTGGCGTTAGTCTTGGCCTTTGTCG
GGGGCAAGATGATCGCGGAGTTCTTTCATGTGGAAGTCCCCATCTCAGTG
TCCCTTTTGGTGGTGATGTCCTTGTTGGGTGGAGGGATTGGATTGAGCGT
GTTAAAGCAGAGGTTTACTGCGAGAAACGCGGAAACAAAGCGGTAGATGG
AGAGCAGGGGGGGGAGGGGTGTAGTGTACATTTCTCACATTATGTGGCCA
GTTGTGAGAGTGAGATCGGGAGAGAAGGTGAGAGGGAAGGTGGGAGGGAC
AACTGCGTTCATTAGTTGGTCTGCGGTGGGAGGTGAAACGGGAGTTTCGT
GAGGAAATCATGAAAAGAGCACGATACGCTAAAAAAAATGCTCAGAGAGA
ACTGCTCTTCTGCGTGCGTGACCTCCCCACACAGGCCAACACCCTCCCAA
CGCAAGCTAGCATTGCATGAAGTTAAAAAACAGATAGATCATTGACGCAA
AGCGGTGCATACCTTAGCTAGCTATTATTGACATTCCTGTGAGATTTCTC
CCTACCGCCGGAGACACATTTTGCACAATGTCTTGGCCTTGACAAT
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protein sequence of NO12G03410.3

>NO12G03410.3-protein ID=NO12G03410.3-protein|Name=NO12G03410.3|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MPWPRVATIILISSRTPLFQFFHTRQTPSKLKSPSFLGGVLKRNPNLKKD
EIYRCISIFVLPPPYLSTEPLAPASTTSPLAPLPKWTTRRGGLQNPFRKH
KQTAPPVESTTSNKAPAVTKIDPAVAYSTAVRRTMLAVGAACAFGFGLWY
IEGKKSAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPFEYQSRALTWGI
VGAVAMRGVMISVGVAAIQRFRWVVLMFAGILLGSAFKLLAETGHEGGEE
DLSDNLMLRVAKKCVNAVDEYDGNKFFTKRNGKRFATPLFMCLICIELSD
FVFAVDSIPAVLGVSKDPLIVYSSNIFAIMALRSLYTLVATAVNTLEYIK
PSVALVLAFVGGKMIAEFFHVEVPISVSLLVVMSLLGGGIGLSVLKQRFT
ARNAETKR*
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mRNA from alignment at chr12:935834..937957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03410.3 ID=NO12G03410.3|Name=NO12G03410.3|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at chr12:935834..937957- (Nannochloropsis oceanica)
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGGTATGATTTAATAACTAT
CTTTACATGTGTAAGCGGTATGCCTTGGCCCCGTGTGGCTACCATCATCC
TCATTTCAAGTCGCACTCCCCTCTTCCAGTTCTTCCACACACGTCAGACC
CCTTCCAAGCTGAAATCCCCCTCCTTTTTGGGTGGCGTGTTAAAGCGTAA
CCCTAACCTTAAGAAAGATGAAATTTACAGGTGTATTTCCATTTTCGTTC
TTCCTCCCCCTTATTTATCAACAGAGCCCTTGGCTCCCGCATCCACCACC
TCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCA
AAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGA
CTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTAC
AGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTT
CGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTT
TTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTC
TTCATCATGCTGTTCGAGTACTTTAAGGTAAGAAGCGGGGAAAGGGAGGA
TGTGGTAGCGTTGACAGAGGAAAATTGCGCGAAAGGTTCATTGCTTTTAC
GCAGAATACTCCACAGTTTCGTTTCTTCACTTCTCTTTACCTCCTTTCAG
GTTCCCTTTGAATACCAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGC
GGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGA
GGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCG
TTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAG
CGACAACTTGATGTTGAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATG
AGTACGATGGGAACAAGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCG
ACGCCCCTGTTCATGTGCTTGATTTGTATTGAACTGTCAGATTTCGTGTT
TGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCCAAGGTATGTGATG
CTCCCTCCCTTCTGTCTTATTCCCGGTTGTGTTTTGGAGGGTTCAATCGC
AGCATCTTGATAAGCACAAACGTCACTTCCCTGACTTTTTCCTTGCCTCC
CTCCCTCCCGTCCTCCCTCCCTCCTTCCCCTCTCTTATCCTTTAGGACCC
CCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTGCGTTCCC
TCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACATCAAGCCC
TCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCGGAGTT
CTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGATGTCCT
TGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTACTGCG
AGAAACGCGGAAACAAAGCGGTAGATGGAGAGCAGGGGGGGGAGGGGTGT
AGTGTACATTTCTCACATTATGTGGCCAGTTGTGAGAGTGAGATCGGGAG
AGAAGGTGAGAGGGAAGGTGGGAGGGACAACTGCGTTCATTAGTTGGTCT
GCGGTGGGAGGTGAAACGGGAGTTTCGTGAGGAAATCATGAAAAGAGCAC
GATACGCTAAAAAAAATGCTCAGAGAGAACTGCTCTTCTGCGTGCGTGAC
CTCCCCACACAGGCCAACACCCTCCCAACGCAAGCTAGCATTGCATGAAG
TTAAAAAACAGATAGATCATTGACGCAAAGCGGTGCATACCTTAGCTAGC
TATTATTGACATTCCTGTGAGATTTCTCCCTACCGCCGGAGACACATTTT
GCACAATGTCTTGGCCTTGACAAT
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Coding sequence (CDS) from alignment at chr12:935834..937957-

>NO12G03410.3 ID=NO12G03410.3|Name=NO12G03410.3|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr12:935834..937957- (Nannochloropsis oceanica)
ATGCCTTGGCCCCGTGTGGCTACCATCATCCTCATTTCAAGTCGCACTCC
CCTCTTCCAGTTCTTCCACACACGTCAGACCCCTTCCAAGCTGAAATCCC
CCTCCTTTTTGGGTGGCGTGTTAAAGCGTAACCCTAACCTTAAGAAAGAT
GAAATTTACAGGTGTATTTCCATTTTCGTTCTTCCTCCCCCTTATTTATC
AACAGAGCCCTTGGCTCCCGCATCCACCACCTCGCCCTTGGCCCCCCTTC
CCAAGTGGACCACGCGCCGAGGCGGGCTTCAAAACCCCTTTCGAAAGCAT
AAGCAAACTGCCCCGCCCGTCGAAAGCACGACTAGCAACAAGGCACCTGC
AGTTACCAAGATCGATCCTGCGGTTGCCTACAGCACGGCGGTTCGCCGAA
CAATGCTTGCGGTAGGCGCCGCGTGTGCCTTCGGGTTTGGCTTGTGGTAC
ATCGAGGGAAAGAAGTCTGCAATGGAGTTTTTTGCCGGGTATCTGATCGA
GGAAAGTCTGAGTGTGGATAATATTTTTGTCTTCATCATGCTGTTCGAGT
ACTTTAAGGTTCCCTTTGAATACCAATCGCGTGCCCTAACGTGGGGAATT
GTCGGGGCGGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAGTGGCCGC
GATTCAGAGGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATATTGCTGG
GGAGCGCGTTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGGAGGAG
GATTTGAGCGACAACTTGATGTTGAGGGTGGCGAAGAAATGTGTGAATGC
CGTGGATGAGTACGATGGGAACAAGTTCTTCACGAAGAGGAACGGAAAGC
GATTCGCGACGCCCCTGTTCATGTGCTTGATTTGTATTGAACTGTCAGAT
TTCGTGTTTGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCCAAGGA
CCCCCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTGCGTT
CCCTCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACATCAAG
CCCTCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCGGA
GTTCTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGATGT
CCTTGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTACT
GCGAGAAACGCGGAAACAAAGCGGTAG
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Synonyms
Publications