NO12G03390.1, NO12G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03390.1
Unique NameNO12G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr12:930190..931703 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:930190..931703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03390.1 vs.
Match: XP_005853735.1 (hypothetical protein NGA_0478601, partial [Nannochloropsis gaditana CCMP526]; EKU22625.1 hypothetical protein NGA_0478601, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 92.0 bits (227), Expect = 5.100e-15
Identity = 67/140 (47.86%), Postives = 81/140 (57.86%), Query Frame = 0 
Query:    1 MEDVWDFDFLPPGLGWTDLADVRQKLEE-YQQVKLDPWFQTAHPELYRDWRLQSGRSSSSSSSSSSSSSAAAAAAAAAAASSASSTSSSFSSLNRRMSGTARRYSNQGLLVGVGAAV-AAANAAAAAALAVRRGSSIRGS 139
            M++ WDFDFLPPGLGWTDLAD R  ++E  Q + +DPWF T H ELY+ W   SGRSS  SS++S+SS                          RR+SG +RR SN   L  VG AV AAA+ AAA +L  RR S IR S
Sbjct:    1 MDESWDFDFLPPGLGWTDLADPRVLMDEGVQSIPIDPWFHTTHAELYQKW---SGRSSRPSSTASASS--------------------------RRLSGKSRRCSNHEALAKVGLAVAAAADTAAAISLIPRRASGIRRS 111
The following BLAST results are available for this feature:
BLAST of NO12G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853735.15.100e-1547.86hypothetical protein NGA_0478601, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03390NO12G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03390.1NO12G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03390.1.cds1NO12G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03390.1.cds2NO12G03390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03390.1 ID=NO12G03390.1|Name=NO12G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGGAGGACGTCTGGGACTTTGACTTTCTGCCCCCAGGCTTGGGATGGAC
GGATCTTGCCGATGTCCGCCAAAAGCTAGAGGAGTACCAACAGGTTAAAC
TGGACCCCTGGTTTCAGACGGCCCACCCAGAGCTCTATCGAGATTGGCGC
CTGCAGTCTGGCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCGCCTCCT
CCACCTCCTCCTCTTTTTCATCATTGAACCGGCGCATGAGCGGCACAGCC
CGTCGCTATTCAAATCAAGGCTTATTGGTAGGGGTGGGGGCGGCGGTCGC
AGCAGCCAACGCAGCAGCAGCAGCAGCTTTGGCGGTCCGGCGGGGGAGCA
GCATTCGAGGCAGCAATACCAGCACGACCAGCAATAGCGGAGCAGAAAGA
GGAGGAGGAGCGAACAAAGAAAATGGAGAAGGGTCACAGCAGCAAGTGGT
CATGGGTCCTCCCCCACCCAGATTACTCAAGCCGGCTGCAGGAGGAAATG
GTGGAGGGGCGGCAAAAGCAGCAGCAGCAGCAGCAGCAGGAGGGGGGGGG
CAGAAGCGGCCGAGGGCACACATGTCGTCATTTGTAAGGCGAAGGGAGGT
GAGGATGGAGGTGGATGAGGAGGAAGAAGAGGAGGGAGAAGAAGGGTTGA
TGGAGGAGTATTGTGACGGAGAGGAGGAGCAGCAGCAGCAGCAGCAGCAG
CAGAGGCAGGGGATCGGTGGCGTGAGAGGTAGAGGAGGAGGAGCAGAAAG
AGGGTTGCAAGGACAAGCATCGGCAGGCCAGTTGATGCGACAGAAGTTGG
AAGAGTTTAAGATGGCCAAAATGGGAAAGGGAGAAGGGGGGAGGAGAGGA
GGAGGGATGGATGGAGGAAGGAGTGATGGTGCTGGTCCAGTCGGTCCTCC
GGCGCGAAAGCCAGCGGTCCCACAGCAGGCACATCGGATGACGACAGGAA
CAGCCAGCAGTAGCAACAGCAGCACTTGTAGCAGCGGCCGTGCTTATGTG
AAGGTGGTGAATGGCAGACCAAGGGAAGCCGCAGCAGGCAGGGGAGGAGC
AGGAGGAAAACGGAAAGCAGCCGCCGGGGGTGTCAAACGCAGCGAAAGCA
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAGGATGAGGAGATGAAA
GCATTGGTTGCCCTGCACAACAAGAAGTTCCGTGCAGCCCAGGCAAACCC
AGCTTATGTGCCTGCATTGAGCGTCAAAGAGACGAAGAAGTGGGAGGCAG
TTACGGGGAAAGTTTACCGAAGCCTGTCGATGCGGGAGAGAGAGATTGCC
AATGCCGAGATGAAGGAGTGGAAGGTGAAGGAGGGATGA
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protein sequence of NO12G03390.1

>NO12G03390.1-protein ID=NO12G03390.1-protein|Name=NO12G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MEDVWDFDFLPPGLGWTDLADVRQKLEEYQQVKLDPWFQTAHPELYRDWR
LQSGRSSSSSSSSSSSSSAAAAAAAAAAASSASSTSSSFSSLNRRMSGTA
RRYSNQGLLVGVGAAVAAANAAAAAALAVRRGSSIRGSNTSTTSNSGAER
GGGANKENGEGSQQQVVMGPPPPRLLKPAAGGNGGGAAKAAAAAAAGGGG
QKRPRAHMSSFVRRREVRMEVDEEEEEEGEEGLMEEYCDGEEEQQQQQQQ
QRQGIGGVRGRGGGAERGLQGQASAGQLMRQKLEEFKMAKMGKGEGGRRG
GGMDGGRSDGAGPVGPPARKPAVPQQAHRMTTGTASSSNSSTCSSGRAYV
KVVNGRPREAAAGRGGAGGKRKAAAGGVKRSESIAAAAAAAAAAEDEEMK
ALVALHNKKFRAAQANPAYVPALSVKETKKWEAVTGKVYRSLSMREREIA
NAEMKEWKVKEG*
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mRNA from alignment at chr12:930190..931703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03390.1 ID=NO12G03390.1|Name=NO12G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp|location=Sequence derived from alignment at chr12:930190..931703+ (Nannochloropsis oceanica)
ATGGAGGACGTCTGGGACTTTGACTTTCTGCCCCCAGGCTTGGGATGGAC
GGATCTTGCCGATGTCCGCCAAAAGCTAGAGGAGTACCAACAGGTCAGTG
AGATGCTTCCCCGTGATTCAGCCTGCCATGCCGCACCCACTCCACACCTG
GAAGGACGCCCCCATCATAATTAGCTCCATCCGCTACTCATACCTCCCTC
CCCTCCGCAATCAAACAGGTTAAACTGGACCCCTGGTTTCAGACGGCCCA
CCCAGAGCTCTATCGAGATTGGCGCCTGCAGTCTGGCCGTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCTCCTCCGCCTCCTCCACCTCCTCCTCTTTTTCATCATT
GAACCGGCGCATGAGCGGCACAGCCCGTCGCTATTCAAATCAAGGCTTAT
TGGTAGGGGTGGGGGCGGCGGTCGCAGCAGCCAACGCAGCAGCAGCAGCA
GCTTTGGCGGTCCGGCGGGGGAGCAGCATTCGAGGCAGCAATACCAGCAC
GACCAGCAATAGCGGAGCAGAAAGAGGAGGAGGAGCGAACAAAGAAAATG
GAGAAGGGTCACAGCAGCAAGTGGTCATGGGTCCTCCCCCACCCAGATTA
CTCAAGCCGGCTGCAGGAGGAAATGGTGGAGGGGCGGCAAAAGCAGCAGC
AGCAGCAGCAGCAGGAGGGGGGGGGCAGAAGCGGCCGAGGGCACACATGT
CGTCATTTGTAAGGCGAAGGGAGGTGAGGATGGAGGTGGATGAGGAGGAA
GAAGAGGAGGGAGAAGAAGGGTTGATGGAGGAGTATTGTGACGGAGAGGA
GGAGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAGGGGATCGGTGGCGTGA
GAGGTAGAGGAGGAGGAGCAGAAAGAGGGTTGCAAGGACAAGCATCGGCA
GGCCAGTTGATGCGACAGAAGTTGGAAGAGTTTAAGATGGCCAAAATGGG
AAAGGGAGAAGGGGGGAGGAGAGGAGGAGGGATGGATGGAGGAAGGAGTG
ATGGTGCTGGTCCAGTCGGTCCTCCGGCGCGAAAGCCAGCGGTCCCACAG
CAGGCACATCGGATGACGACAGGAACAGCCAGCAGTAGCAACAGCAGCAC
TTGTAGCAGCGGCCGTGCTTATGTGAAGGTGGTGAATGGCAGACCAAGGG
AAGCCGCAGCAGGCAGGGGAGGAGCAGGAGGAAAACGGAAAGCAGCCGCC
GGGGGTGTCAAACGCAGCGAAAGCATAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGAGGATGAGGAGATGAAAGCATTGGTTGCCCTGCACAACAAGA
AGTTCCGTGCAGCCCAGGCAAACCCAGCTTATGTGCCTGCATTGAGCGTC
AAAGAGACGAAGAAGTGGGAGGCAGTTACGGGGAAAGTTTACCGAAGCCT
GTCGATGCGGGAGAGAGAGATTGCCAATGCCGAGATGAAGGAGTGGAAGG
TGAAGGAGGGATGA
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Coding sequence (CDS) from alignment at chr12:930190..931703+

>NO12G03390.1 ID=NO12G03390.1|Name=NO12G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr12:930190..931703+ (Nannochloropsis oceanica)
ATGGAGGACGTCTGGGACTTTGACTTTCTGCCCCCAGGCTTGGGATGGAC
GGATCTTGCCGATGTCCGCCAAAAGCTAGAGGAGTACCAACAGGTTAAAC
TGGACCCCTGGTTTCAGACGGCCCACCCAGAGCTCTATCGAGATTGGCGC
CTGCAGTCTGGCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCGCCTCCT
CCACCTCCTCCTCTTTTTCATCATTGAACCGGCGCATGAGCGGCACAGCC
CGTCGCTATTCAAATCAAGGCTTATTGGTAGGGGTGGGGGCGGCGGTCGC
AGCAGCCAACGCAGCAGCAGCAGCAGCTTTGGCGGTCCGGCGGGGGAGCA
GCATTCGAGGCAGCAATACCAGCACGACCAGCAATAGCGGAGCAGAAAGA
GGAGGAGGAGCGAACAAAGAAAATGGAGAAGGGTCACAGCAGCAAGTGGT
CATGGGTCCTCCCCCACCCAGATTACTCAAGCCGGCTGCAGGAGGAAATG
GTGGAGGGGCGGCAAAAGCAGCAGCAGCAGCAGCAGCAGGAGGGGGGGGG
CAGAAGCGGCCGAGGGCACACATGTCGTCATTTGTAAGGCGAAGGGAGGT
GAGGATGGAGGTGGATGAGGAGGAAGAAGAGGAGGGAGAAGAAGGGTTGA
TGGAGGAGTATTGTGACGGAGAGGAGGAGCAGCAGCAGCAGCAGCAGCAG
CAGAGGCAGGGGATCGGTGGCGTGAGAGGTAGAGGAGGAGGAGCAGAAAG
AGGGTTGCAAGGACAAGCATCGGCAGGCCAGTTGATGCGACAGAAGTTGG
AAGAGTTTAAGATGGCCAAAATGGGAAAGGGAGAAGGGGGGAGGAGAGGA
GGAGGGATGGATGGAGGAAGGAGTGATGGTGCTGGTCCAGTCGGTCCTCC
GGCGCGAAAGCCAGCGGTCCCACAGCAGGCACATCGGATGACGACAGGAA
CAGCCAGCAGTAGCAACAGCAGCACTTGTAGCAGCGGCCGTGCTTATGTG
AAGGTGGTGAATGGCAGACCAAGGGAAGCCGCAGCAGGCAGGGGAGGAGC
AGGAGGAAAACGGAAAGCAGCCGCCGGGGGTGTCAAACGCAGCGAAAGCA
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAGGATGAGGAGATGAAA
GCATTGGTTGCCCTGCACAACAAGAAGTTCCGTGCAGCCCAGGCAAACCC
AGCTTATGTGCCTGCATTGAGCGTCAAAGAGACGAAGAAGTGGGAGGCAG
TTACGGGGAAAGTTTACCGAAGCCTGTCGATGCGGGAGAGAGAGATTGCC
AATGCCGAGATGAAGGAGTGGAAGGTGAAGGAGGGATGA
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Synonyms
Publications