NO12G03300.1, NO12G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03300.1
Unique NameNO12G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr12:908844..909446 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:908844..909446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G03300.1 vs.
Match: EWM25718.1 (Drug/metabolite transporter [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 3.000e-33
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 0 
Query:    2 VLQRYFRSSKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDPV------PGEGVGGALYTTVRSGRGGGGG 108
            ++ RYF  SKRSASYALGLFFIFLVA+IWAGASVLIQHIYTDMHFESPFLLTFICTSLFS+YLPWT LC +LGW +NPPWRDP         E     LY+TV +G+  G G
Sbjct:    1 MVHRYFTGSKRSASYALGLFFIFLVAIIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSVYLPWTYLCVRLGWTKNPPWRDPTLESSASAHERRPNVLYSTVHNGKDTGQG 112
The following BLAST results are available for this feature:
BLAST of NO12G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25718.13.000e-3370.54Drug/metabolite transporter [Nannochloropsis gadit... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03300NO12G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03300.1NO12G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03300.1.cds1NO12G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03300.1 ID=NO12G03300.1|Name=NO12G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTCCGCCTCCTACGC
CCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTTGGGCTGGGGCTT
CCGTGCTCATTCAACACATATACACCGACATGCATTTCGAGTCGCCTTTC
CTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTACCTGCCTTGGAC
ATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCACCGTGGCGCGATC
CTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACAACGGTGCGAAGT
GGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACA
CCGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAA
CTGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGA
GACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCT
TCCCCTCCTCCTCCTGCTCCCCCCCCCACCCCAACAACGATGGAGCCACC
TAA
back to top

protein sequence of NO12G03300.1

>NO12G03300.1-protein ID=NO12G03300.1-protein|Name=NO12G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MVLQRYFRSSKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPF
LLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDPVPGEGVGGALYTTVRS
GRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNTGSSCINYGNSRMRIDE
LPLRAGMGSDSSLFSVETTAAAVQEHDELTATSFPSSSCSPPHPNNDGAT
*
back to top

mRNA from alignment at chr12:908844..909446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03300.1 ID=NO12G03300.1|Name=NO12G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at chr12:908844..909446+ (Nannochloropsis oceanica)
ATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTCCGCCTCCTACGC
CCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTTGGGCTGGGGCTT
CCGTGCTCATTCAACACATATACACCGACATGCATTTCGAGTCGCCTTTC
CTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTACCTGCCTTGGAC
ATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCACCGTGGCGCGATC
CTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACAACGGTGCGAAGT
GGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACA
CCGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAA
CTGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGA
GACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCT
TCCCCTCCTCCTCCTGCTCCCCCCCCCACCCCAACAACGATGGAGCCACC
TAA
back to top

Coding sequence (CDS) from alignment at chr12:908844..909446+

>NO12G03300.1 ID=NO12G03300.1|Name=NO12G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr12:908844..909446+ (Nannochloropsis oceanica)
ATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTCCGCCTCCTACGC
CCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTTGGGCTGGGGCTT
CCGTGCTCATTCAACACATATACACCGACATGCATTTCGAGTCGCCTTTC
CTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTACCTGCCTTGGAC
ATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCACCGTGGCGCGATC
CTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACAACGGTGCGAAGT
GGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACA
CCGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAA
CTGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGA
GACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCT
TCCCCTCCTCCTCCTGCTCCCCCCCCCACCCCAACAACGATGGAGCCACC
TAA
back to top
Synonyms
Publications