NO12G03250.1, NO12G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03250.1
Unique NameNO12G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr12:898012..898887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:898012..898887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03250.1 vs.
Match: XP_005852667.1 (hypothetical protein NGA_0697300 [Nannochloropsis gaditana CCMP526]; EKU23166.1 hypothetical protein NGA_0697300 [Nannochloropsis gaditana CCMP526]; EWM25734.1 resistance to phytophthora 1 protein [Nannochloropsis gaditana])

HSP 1 Score: 388.7 bits (997), Expect = 1.600e-104
Identity = 212/289 (73.36%), Postives = 231/289 (79.93%), Query Frame = 0 
Query:   13 ILVSSLLLASTHAFLLPSPASSQAIGITSSIRRPVATRTAVTER-------EQQQERKGISEDDPMVQRIRDEVLRETGVELDQLLNPSKVVNLEFDLINLRNERD--TTDDNKALATLEKQIQKKETQLATEKRLVMRGWLKNLFLGQSLGAVALSGVVVYDALPGFDHLPLPVRAFAFWSFWMFTIPSLRARKPGQTEKKALDVAFLLTPIVSLGMPFLTKDMPTIWWANAVATGASYGYAYVFQGKGVGEEGME-GEEEDETLPAPLKAALKALDWGSGRERGVRK 292
            +L    L  ST AF+  +P S   I   +  +      +AV ER       EQ QER GISEDDPMVQRIR++V RETGV+LDQLLNPSKVVNLEF+LINLRNER   T    KALA LE QI+KKETQLATEKRLVMRGWLKNLFLGQSL AV LSGVV YDALPGF+HLPLP+RAFAFWSFWMFTIPSLRAR+PG  EKKALDVAFLLTP+VSLGMPFLT+D+PTIWWANAVATG SYGYA+ FQGKG   EG + G EEDETLP PLKAALKALDWGSGRERGVRK
Sbjct:    8 LLALCFLFISTFAFVPSTPVSFGFIDRMTPHKARTTALSAVKERTAASGKQEQAQERVGISEDDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
The following BLAST results are available for this feature:
BLAST of NO12G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852667.11.600e-10473.36hypothetical protein NGA_0697300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03250NO12G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03250.1NO12G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03250.1.cds1NO12G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03250.1 ID=NO12G03250.1|Name=NO12G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGACGGCCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTC
CCTGTTGCTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCA
GCCAGGCCATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGT
ACAGCTGTCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGA
AGATGATCCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGG
GCGTGGAGCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAG
TTTGATTTGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAA
GGCCCTCGCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTG
CCACAGAAAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTG
GGGCAGTCCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGC
ACTGCCGGGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTT
GGAGCTTCTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGA
CAGACTGAGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGT
GAGCTTGGGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGG
CCAATGCAGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAA
GGCAAGGGTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGAC
GTTGCCGGCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGG
GGCGGGAGAGGGGAGTGAGGAAGTAG
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protein sequence of NO12G03250.1

>NO12G03250.1-protein ID=NO12G03250.1-protein|Name=NO12G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MTARHAALNAALILVSSLLLASTHAFLLPSPASSQAIGITSSIRRPVATR
TAVTEREQQQERKGISEDDPMVQRIRDEVLRETGVELDQLLNPSKVVNLE
FDLINLRNERDTTDDNKALATLEKQIQKKETQLATEKRLVMRGWLKNLFL
GQSLGAVALSGVVVYDALPGFDHLPLPVRAFAFWSFWMFTIPSLRARKPG
QTEKKALDVAFLLTPIVSLGMPFLTKDMPTIWWANAVATGASYGYAYVFQ
GKGVGEEGMEGEEEDETLPAPLKAALKALDWGSGRERGVRK*
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mRNA from alignment at chr12:898012..898887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03250.1 ID=NO12G03250.1|Name=NO12G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr12:898012..898887- (Nannochloropsis oceanica)
ATGACGGCCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTC
CCTGTTGCTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCA
GCCAGGCCATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGT
ACAGCTGTCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGA
AGATGATCCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGG
GCGTGGAGCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAG
TTTGATTTGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAA
GGCCCTCGCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTG
CCACAGAAAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTG
GGGCAGTCCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGC
ACTGCCGGGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTT
GGAGCTTCTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGA
CAGACTGAGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGT
GAGCTTGGGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGG
CCAATGCAGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAA
GGCAAGGGTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGAC
GTTGCCGGCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGG
GGCGGGAGAGGGGAGTGAGGAAGTAG
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Coding sequence (CDS) from alignment at chr12:898012..898887-

>NO12G03250.1 ID=NO12G03250.1|Name=NO12G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr12:898012..898887- (Nannochloropsis oceanica)
ATGACGGCCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTC
CCTGTTGCTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCA
GCCAGGCCATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGT
ACAGCTGTCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGA
AGATGATCCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGG
GCGTGGAGCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAG
TTTGATTTGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAA
GGCCCTCGCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTG
CCACAGAAAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTG
GGGCAGTCCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGC
ACTGCCGGGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTT
GGAGCTTCTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGA
CAGACTGAGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGT
GAGCTTGGGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGG
CCAATGCAGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAA
GGCAAGGGTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGAC
GTTGCCGGCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGG
GGCGGGAGAGGGGAGTGAGGAAGTAG
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Synonyms
Publications