NO12G03150.1, NO12G03150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03150.1
Unique NameNO12G03150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2064
Alignment locationchr12:865852..867915 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:865852..867915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03150.1 vs.
Match: EWM25721.1 (hypothetical protein Naga_100154g8 [Nannochloropsis gaditana])

HSP 1 Score: 109.0 bits (271), Expect = 5.900e-20
Identity = 104/286 (36.36%), Postives = 140/286 (48.95%), Query Frame = 0
Query:  366 PPPLPAPKTRYLLHTKEAYAIFLREFLQNWGGKPILPAFLPPPHSAPTSSSK-----LIRAGKIKTTLPSLLRPLTHLQLLLLARHEWSTLSLRRKRRYFK--SHITEARGGIYPTHIRSKAEAAACTAAAVAQRQREDARPATMKEMFPFFGGVGRGSGGSGSDSAADIPAGIGGVWRGPPPTNLVALVMREERCNVAEARERVRKMTERERRRRKEEVREGKERYEKEVEEYCVMWQLPVVVGGEEGKGMEEERERDEEAAVEEEQKEDDDDEEGNDEDEGDGG 645
            PPP PA  T YLL TK+A++ + R FL+ W G P+LP   PPP  A  S        LI  G ++  +   LR L+HL+LL +AR +WS LS RR+R YF+      E RGG++P+  R  AEA+       A + RE+A P                             AG  G+   P   +L A  MR  R  V EA+ R+ +MTE ERRR ++ VRE KE Y++ VE +C       +  G EG      RE + E   EE  +E   +EE   E+ G GG
Sbjct:  149 PPPPPALDTHYLLRTKDAFSAYFRVFLRQWAGVPLLPLPSPPPPPASPSHPSPHAPGLITTGVLRDHVRGGLRCLSHLELLHVARQQWSHLSRRRRRPYFRLGPSYREGRGGVHPSSRRVAAEASRLARGYAAFQARENAPPW----------------------------AGPEGLPLAPKVKSLAAWEMRRGRIPVVEAQARIGRMTEGERRRGRQAVREEKEEYDRAVERFCARHGRGGIEEGMEGGRGRGAREEEGEVGQEERGRELRKEEE---EEGGVGG 403          
The following BLAST results are available for this feature:
BLAST of NO12G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25721.15.900e-2036.36hypothetical protein Naga_100154g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03150NO12G03150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03150.1NO12G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03150.1.cds1NO12G03150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp
ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC
ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC
CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT
AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG
TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC
ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA
TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC
TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA
CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT
GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC
TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG
TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT
ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA
GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG
CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT
CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA
AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT
CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA
GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA
CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC
AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA
TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC
TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT
ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC
CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA
GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC
CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT
CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC
CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG
CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA
GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG
TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG
GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG
GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC
GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC
GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG
GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA
CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG
AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT
GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC
GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA
CAGTAAGTAAATAA
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protein sequence of NO12G03150.1

>NO12G03150.1-protein ID=NO12G03150.1-protein|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MEASSPHPQPLSPSVQPSWRLGSDTAAARPLPHPPAFDVAQSLALTVTSS
SGTSQGKKRKLPSTKASAYRPAATTTNADAARPHIPTSAPQLNQDAAGAK
SKTHKSSRKSRGGSGGAADGKPSGSSSLISSSKTKSSHHLETAKANMAGT
ETVVLISRTTTHSPLSSSSDDGVDPNAAMPVPVVNDTPPPPPPPPPPDSS
IPVVQPPATGKICKAKKKKTAITTSKKSRQAIAAATGVLSLAPPPPPSSL
PRPPQSSSSTPYLNPPKNNAAVVAAATPMMSTTSMTIARQDVVEGMEEEE
EEGKEIEKEGEGIEDDDHHHQRQQRQQRQHQQYQQQPTLKQYHLLRRPDK
SWISRSFSSATAISLPPPLPAPKTRYLLHTKEAYAIFLREFLQNWGGKPI
LPAFLPPPHSAPTSSSKLIRAGKIKTTLPSLLRPLTHLQLLLLARHEWST
LSLRRKRRYFKSHITEARGGIYPTHIRSKAEAAACTAAAVAQRQREDARP
ATMKEMFPFFGGVGRGSGGSGSDSAADIPAGIGGVWRGPPPTNLVALVMR
EERCNVAEARERVRKMTERERRRRKEEVREGKERYEKEVEEYCVMWQLPV
VVGGEEGKGMEEERERDEEAAVEEEQKEDDDDEEGNDEDEGDGGDDDDDG
ENDDNEENEGEEDVPLSCLLSAVKGGKKRRWTITVSK*
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mRNA from alignment at chr12:865852..867915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at chr12:865852..867915- (Nannochloropsis oceanica)
ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA CAGTAAGTAAATAA
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Coding sequence (CDS) from alignment at chr12:865852..867915-

>NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr12:865852..867915- (Nannochloropsis oceanica)
ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC
ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC
CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT
AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG
TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC
ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA
TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC
TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA
CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT
GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC
TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG
TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT
ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA
GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG
CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT
CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA
AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT
CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA
GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA
CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC
AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA
TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC
TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT
ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC
CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA
GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC
CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT
CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC
CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG
CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA
GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG
TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG
GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG
GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC
GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC
GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG
GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA
CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG
AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT
GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC
GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA
CAGTAAGTAAATAA
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Synonyms
Publications