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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:865852..867915 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03150.1 vs.
Match: EWM25721.1 (hypothetical protein Naga_100154g8 [Nannochloropsis gaditana]) HSP 1 Score: 109.0 bits (271), Expect = 5.900e-20 Identity = 104/286 (36.36%), Postives = 140/286 (48.95%), Query Frame = 0
Query: 366 PPPLPAPKTRYLLHTKEAYAIFLREFLQNWGGKPILPAFLPPPHSAPTSSSK-----LIRAGKIKTTLPSLLRPLTHLQLLLLARHEWSTLSLRRKRRYFK--SHITEARGGIYPTHIRSKAEAAACTAAAVAQRQREDARPATMKEMFPFFGGVGRGSGGSGSDSAADIPAGIGGVWRGPPPTNLVALVMREERCNVAEARERVRKMTERERRRRKEEVREGKERYEKEVEEYCVMWQLPVVVGGEEGKGMEEERERDEEAAVEEEQKEDDDDEEGNDEDEGDGG 645
PPP PA T YLL TK+A++ + R FL+ W G P+LP PPP A S LI G ++ + LR L+HL+LL +AR +WS LS RR+R YF+ E RGG++P+ R AEA+ A + RE+A P AG G+ P +L A MR R V EA+ R+ +MTE ERRR ++ VRE KE Y++ VE +C + G EG RE + E EE +E +EE E+ G GG
Sbjct: 149 PPPPPALDTHYLLRTKDAFSAYFRVFLRQWAGVPLLPLPSPPPPPASPSHPSPHAPGLITTGVLRDHVRGGLRCLSHLELLHVARQQWSHLSRRRRRPYFRLGPSYREGRGGVHPSSRRVAAEASRLARGYAAFQARENAPPW----------------------------AGPEGLPLAPKVKSLAAWEMRRGRIPVVEAQARIGRMTEGERRRGRQAVREEKEEYDRAVERFCARHGRGGIEEGMEGGRGRGAREEEGEVGQEERGRELRKEEE---EEGGVGG 403
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA CAGTAAGTAAATAA back to topprotein sequence of NO12G03150.1 >NO12G03150.1-protein ID=NO12G03150.1-protein|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp MEASSPHPQPLSPSVQPSWRLGSDTAAARPLPHPPAFDVAQSLALTVTSS SGTSQGKKRKLPSTKASAYRPAATTTNADAARPHIPTSAPQLNQDAAGAK SKTHKSSRKSRGGSGGAADGKPSGSSSLISSSKTKSSHHLETAKANMAGT ETVVLISRTTTHSPLSSSSDDGVDPNAAMPVPVVNDTPPPPPPPPPPDSS IPVVQPPATGKICKAKKKKTAITTSKKSRQAIAAATGVLSLAPPPPPSSL PRPPQSSSSTPYLNPPKNNAAVVAAATPMMSTTSMTIARQDVVEGMEEEE EEGKEIEKEGEGIEDDDHHHQRQQRQQRQHQQYQQQPTLKQYHLLRRPDK SWISRSFSSATAISLPPPLPAPKTRYLLHTKEAYAIFLREFLQNWGGKPI LPAFLPPPHSAPTSSSKLIRAGKIKTTLPSLLRPLTHLQLLLLARHEWST LSLRRKRRYFKSHITEARGGIYPTHIRSKAEAAACTAAAVAQRQREDARP ATMKEMFPFFGGVGRGSGGSGSDSAADIPAGIGGVWRGPPPTNLVALVMR EERCNVAEARERVRKMTERERRRRKEEVREGKERYEKEVEEYCVMWQLPV VVGGEEGKGMEEERERDEEAAVEEEQKEDDDDEEGNDEDEGDGGDDDDDG ENDDNEENEGEEDVPLSCLLSAVKGGKKRRWTITVSK* back to topmRNA from alignment at chr12:865852..867915- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at chr12:865852..867915- (Nannochloropsis oceanica) ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC
ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC
CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT
AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG
TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC
ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA
TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC
TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA
CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT
GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC
TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG
TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT
ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA
GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG
CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT
CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA
AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT
CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA
GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA
CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC
AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA
TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC
TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT
ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC
CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA
GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC
CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT
CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC
CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG
CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA
GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG
TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG
GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG
GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC
GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC
GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG
GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA
CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG
AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT
GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC
GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA
CAGTAAGTAAATAA back to topCoding sequence (CDS) from alignment at chr12:865852..867915- >NO12G03150.1 ID=NO12G03150.1|Name=NO12G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr12:865852..867915- (Nannochloropsis oceanica) ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA CAGTAAGTAAATAA back to top
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