NO12G03090.1, NO12G03090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03090.1
Unique NameNO12G03090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr12:849571..851780 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:849571..851780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03090.1 vs.
Match: EWM25717.1 (sugar nucleotide epimerase [Nannochloropsis gaditana])

HSP 1 Score: 367.9 bits (943), Expect = 2.300e-98
Identity = 176/234 (75.21%), Postives = 197/234 (84.19%), Query Frame = 0 
Query:    1 MRTAV---LFATILLQAAAPTMASFSF------GQNSLECKTVVPQNPVDLQKYASGRWFIHQQMATQAGNPNGQWNYCVFAEYTIKTSNNLAVHNYANEGGVNNIIHDAQLCATIRDPQNDPGRLSVGPCFLEFLDRFAFGPYFIVAYDEAEGYALVSGGSPTIPTKDGLCTTQRGFNNAGLWVFSRSNVRDETLIQKVREIAVSKGFDVDVLEDVQHVGCNYTSSSGPAFLR 226
            MRT V   ++A +L   AAP +A FSF      G +   CKTVVPQNPV+LQ+YAS RW+IHQQMATQAGNPNG+WN CV+AEYTIK+ NN+AVHNYANEGGVNNII +A LCAT+RDP+NDPGRL+VGPCFLEF +R  +GPYFIVAYDEAEGYAL+SGGSPTIPTKDGLCTTQRGFNNAGLW+FSRSNVRDE LIQK+R IAV KGFDVDVLEDVQH GC Y  SS PA LR
Sbjct:    1 MRTTVSASIYAILLTATAAPVLADFSFDKAWFHGGDGGACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTYRPSSEPAGLR 234
The following BLAST results are available for this feature:
BLAST of NO12G03090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25717.12.300e-9875.21sugar nucleotide epimerase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03090NO12G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03090.1NO12G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03090.1.cds1NO12G03090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03090.1.cds2NO12G03090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03090.1.cds3NO12G03090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03090.1 ID=NO12G03090.1|Name=NO12G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
CAGCAGCAGAAGAAGAACTTCCCTACAAAAGGAATAGGAATTGAATTTCA
GTCATAAGCAAAAGGAGGTTTTGATGGCGTCACGATGCTAGGAGAATTCA
AATTCTATAGGAGCAATTTCGCTGCTGGGCGGCCCGTGTCGATGGCTTCA
AACGTCGGAGAGCAAGCGTCGGAGAGCGGGACTGTGCGTGACTCTTCCAC
GGCTGTTCCTGGCCCATGGCTGTGCATTAGACGTCAGTGCGCACCTGTGT
ACCGTTTTCTACACGTCCAACCCTTTGTGTCGCTTGCAGTTGGCACATTT
CGCTGGTCTGTTTGAGCTTTTGTTTGTAATAATGTGCACATGGCACTCCC
CTCGCTTATCCGCTCGAACGGTTGGTTCACATATCCCAAGTGGTATGGTG
AGCATTTCACGTGCTGCCAACCAAGGAAATCACTTTCACAGGCCTGAAAG
ATTGTGTGCGGCTTGTTTGTCTCATCCGCGTGGCTTTATTGGCATTATTG
TGGCTGCATTATTTGAGGCTGCCGGGTTTGGTTGAAAGAAACGTAACCAT
CCCTTCCCCATCTCGGCCGCACGTCCCATACGCACAAGCGGGCTACGTGA
TACAATGTGTATTTTTCGAGTTCAAAGCCATCCAATATGCTCACTTTTTT
TGGGTAACGTGGTCCTTGTATCTAATCCTGCCCGCTCGATCACAGGTGCA
CATACCCTGCCAAGGAACAAATCATGCGTACCGCCGTCCTTTTCGCGACC
ATCCTGCTCCAGGCCGCCGCTCCTACCATGGCCAGCTTCTCATTCGGCCA
GAATTCTCTGGAGTGCAAGACGGTTGTCCCTCAGAATCCGGTGGATCTGC
AGAAGTACGCCAGTGGCCGTTGGTTCATCCATCAACAGATGGCGACGCAG
GCGGGGAACCCGAATGGGCAGTGGAATTACTGTGTCTTCGCCGAATACAC
AATAAAGACTTCGAACAACCTGGCCGTGCACAACTACGCGAACGAGGGCG
GAGTTAACAACATCATCCACGACGCCCAGCTCTGCGCCACAATTAGAGAC
CCCCAAAACGACCCTGGTCGCTTGTCAGTGGGACCGTGCTTCCTTGAATT
CCTTGACCGGTTCGCTTTTGGGCCATATTTCATAGTGGCGTATGATGAGG
CGGAAGGCTATGCTTTGGTTTCGGGGGGAAGTCCTACCATTCCAACTAAG
GATGGCCTTTGCACAACTCAGCGGGGTTTCAATAATGCTGGACTGTGGGT
GTTCTCTCGATCTAATGTGCGGGATGAAACATTGATTCAGAAGGTCCGGG
AAATTGCCGTGTCTAAGGGTTTTGACGTGGATGTGCTCGAGGATGTGCAG
CATGTGGGTTGCAATTATACGTCATCATCCGGGCCCGCATTCCTGCGAGC
TTAAGCCGGAGGATGGTATGGGGATGAAGGTGAGAGCTCGCTGGAGGGAG
AAAGATGAGAAATAATGCGGAGAGAATCTGATAGCGACAGTGGCATTTAG
AGTCCGAAAAGGCTTGTACACGACATCAAAGCAGAACAACAACAATTTAT
AAAGAGGAACGCATGAGGGGAGGGGAAACCGAGGCGGTAGCTTATGCAAA
CGGAAGTTACCGACAGTCTGGGACATTGGGTAGTTGCTGGACACGACATT
GCAGAAAGAAAAAAAG
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protein sequence of NO12G03090.1

>NO12G03090.1-protein ID=NO12G03090.1-protein|Name=NO12G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MRTAVLFATILLQAAAPTMASFSFGQNSLECKTVVPQNPVDLQKYASGRW
FIHQQMATQAGNPNGQWNYCVFAEYTIKTSNNLAVHNYANEGGVNNIIHD
AQLCATIRDPQNDPGRLSVGPCFLEFLDRFAFGPYFIVAYDEAEGYALVS
GGSPTIPTKDGLCTTQRGFNNAGLWVFSRSNVRDETLIQKVREIAVSKGF
DVDVLEDVQHVGCNYTSSSGPAFLRA*
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mRNA from alignment at chr12:849571..851780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03090.1 ID=NO12G03090.1|Name=NO12G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr12:849571..851780- (Nannochloropsis oceanica)
CAGCAGCAGAAGAAGAACTTCCCTACAAAAGGAATAGGAATTGAATTTCA
GTCATAAGCAAAAGGAGGTTTTGATGGCGTCACGATGCTAGGAGAATTCA
AATTCTATAGGAGCAATTTCGCTGCTGGGCGGCCCGTGTCGATGGCTTCA
AACGTCGGAGAGCAAGCGTCGGAGAGCGGGACTGTGCGTGACTCTTCCAC
GGCTGTTCCTGGCCCATGGCTGTGCATTAGACGTCAGTGCGCACCTGTGT
ACCGTTTTCTACACGTCCAACCCTTTGTGTCGCTTGCAGTTGGCACATTT
CGCTGGTCTGTTTGAGCTTTTGTTTGTAATAATGTGCACATGGCACTCCC
CTCGCTTATCCGCTCGAACGGTTGGTTCACATATCCCAAGTGGTATGGTG
AGCATTTCACGTGCTGCCAACCAAGGAAATCACTTTCACAGGCCTGAAAG
ATTGTGTGCGGCTTGTTTGTCTCATCCGCGTGGCTTTATTGGCATTATTG
TGGCTGCATTATTTGAGGCTGCCGGGTTTGGTTGAAAGAAACGTAACCAT
CCCTTCCCCATCTCGGCCGCACGTCCCATACGCACAAGCGGGCTACGTGA
TACAATGTGTATTTTTCGAGTTCAAAGCCATCCAATATGCTCACTTTTTT
TGGGTAACGTGGTCCTTGTATCTAATCCTGCCCGCTCGATCACAGGTGCA
CATACCCTGCCAAGGAACAAATCATGCGTACCGCCGTCCTTTTCGCGACC
ATCCTGCTCCAGGCCGCCGCTCCTACCATGGCCAGCTTCTCATTCGGCCA
GGTAATTACTGCTAGTATCTGTGTTGGTATGGGCGAGCGCTTTTATCGTT
CGAATGCTGCTGAAGTTCTGGTCCTAACCTGTGGCAGGGATGGCAGGGAC
ATCCATGTGTGGAAAGAAAGACAAGCTTTCCTGGGACCGAGCACAGTTCA
GTGTTAGGTGTCCGAGGGTCTATAAATGACTTCAACTTGAACAACAGACC
TCCTGTGACATTCCTCTTATACCCTCTGCTATCATAATCACGCATTTCCT
AACACCACTTGTCCTTTTATCTCCGTCCCCCCCTTCTCGCCTCCTCAGAA
TTCTCTGGAGTGCAAGACGGTTGTCCCTCAGAATCCGGTGGATCTGCAGA
AGTACGCCAGTGGCCGTTGGTTCATCCATCAACAGATGGCGACGCAGGCG
GGGAACCCGAATGGGCAGTGGAATTACTGGTGGGTTTGACTGGGGAGGAT
GGGATGGCGTTCTGAGTGTAACCTCTACCAGCTTACACTTACTTTCTTGC
ACTGTGTCTAAAGCCAGCACAGCCAGCAAATCGTTGTTAGGCATCAAGTA
AACACGTCCTTGTAGTCGCAACCTCGAAGTCTCGTCGTCGCAGCATGCCA
TTCTTTTATTTTGTATTATTCCTCCTTTCACCGTCGCCCCTCCCCATTCA
CCCTCCTGTCCGTCCTCTCTCCCCAGTGTCTTCGCCGAATACACAATAAA
GACTTCGAACAACCTGGCCGTGCACAACTACGCGAACGAGGGCGGAGTTA
ACAACATCATCCACGACGCCCAGCTCTGCGCCACAATTAGAGACCCCCAA
AACGACCCTGGTCGCTTGTCAGTGGGACCGTGCTTCCTTGAATTCCTTGA
CCGGTTCGCTTTTGGGCCATATTTCATAGTGGCGTATGATGAGGCGGAAG
GCTATGCTTTGGTTTCGGGGGGAAGTCCTACCATTCCAACTAAGGATGGC
CTTTGCACAACTCAGCGGGGTTTCAATAATGCTGGACTGTGGGTGTTCTC
TCGATCTAATGTGCGGGATGAAACATTGATTCAGAAGGTCCGGGAAATTG
CCGTGTCTAAGGGTTTTGACGTGGATGTGCTCGAGGATGTGCAGCATGTG
GGTTGCAATTATACGTCATCATCCGGGCCCGCATTCCTGCGAGCTTAAGC
CGGAGGATGGTATGGGGATGAAGGTGAGAGCTCGCTGGAGGGAGAAAGAT
GAGAAATAATGCGGAGAGAATCTGATAGCGACAGTGGCATTTAGAGTCCG
AAAAGGCTTGTACACGACATCAAAGCAGAACAACAACAATTTATAAAGAG
GAACGCATGAGGGGAGGGGAAACCGAGGCGGTAGCTTATGCAAACGGAAG
TTACCGACAGTCTGGGACATTGGGTAGTTGCTGGACACGACATTGCAGAA
AGAAAAAAAG
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Coding sequence (CDS) from alignment at chr12:849571..851780-

>NO12G03090.1 ID=NO12G03090.1|Name=NO12G03090.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr12:849571..851780- (Nannochloropsis oceanica)
ATGCGTACCGCCGTCCTTTTCGCGACCATCCTGCTCCAGGCCGCCGCTCC
TACCATGGCCAGCTTCTCATTCGGCCAGAATTCTCTGGAGTGCAAGACGG
TTGTCCCTCAGAATCCGGTGGATCTGCAGAAGTACGCCAGTGGCCGTTGG
TTCATCCATCAACAGATGGCGACGCAGGCGGGGAACCCGAATGGGCAGTG
GAATTACTGTGTCTTCGCCGAATACACAATAAAGACTTCGAACAACCTGG
CCGTGCACAACTACGCGAACGAGGGCGGAGTTAACAACATCATCCACGAC
GCCCAGCTCTGCGCCACAATTAGAGACCCCCAAAACGACCCTGGTCGCTT
GTCAGTGGGACCGTGCTTCCTTGAATTCCTTGACCGGTTCGCTTTTGGGC
CATATTTCATAGTGGCGTATGATGAGGCGGAAGGCTATGCTTTGGTTTCG
GGGGGAAGTCCTACCATTCCAACTAAGGATGGCCTTTGCACAACTCAGCG
GGGTTTCAATAATGCTGGACTGTGGGTGTTCTCTCGATCTAATGTGCGGG
ATGAAACATTGATTCAGAAGGTCCGGGAAATTGCCGTGTCTAAGGGTTTT
GACGTGGATGTGCTCGAGGATGTGCAGCATGTGGGTTGCAATTATACGTC
ATCATCCGGGCCCGCATTCCTGCGAGCTTAA
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Synonyms
Publications