NO12G03080.2, NO12G03080.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03080.2
Unique NameNO12G03080.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1910
Alignment locationchr12:847245..849291 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:847245..849291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03080.2 vs.
Match: EWM25729.1 (protein prenyltransferase alpha subunit repeat containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 221.9 bits (564), Expect = 4.600e-54
Identity = 178/541 (32.90%), Postives = 259/541 (47.87%), Query Frame = 0
Query:    3 FVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEKEDMMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFSKYTKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWC-----------WSQQREKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEK-------------------------GLTLKIETSDEEKKEEA-------ALWQ-QEVEFVRGW-TGRHVGDMAAMNYLQQVLTHAISVSPSPPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQS---------LARLRSITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRR-EVAGSLSSSPFSSSSSSSTSAIAT------AAAVPPSYHAQITLYNAEMDRGSHYMQGERPWEGGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKENER--AALWEELMALEASDSLLFVPPGYKCLL 481
            F+LE HKLGIATWA+K I++EAL     +  A ++A    +        D  + +  TRALLLIN D Y+AWN+RKRL++ G L A +E++F+D++  K++KK SAWAHRRWCV+ +LE    + R+           + Q+Q C           W + +EKE+ +T +IA   P+NY+AWT R  V+  +D+ + D +  E                          G   + +  DEE +E+          W  ++ E +  W TG  +GDM+A ++LQQVLT  ++  PS     +    +          S   +        S+ +R+Q  S          A    +   L   L  N   LD YPG ESLWYQRRG L L  A MRR    AG      +   S+               A +P           +E+ R SHY+QG  PWEG       GL+WD  ++R+Q+L AW+ +CW++LR      WE +GA    +    L EEL +LEAS   + +PPGYK L+
Sbjct:   59 FLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVIL-QDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLT-LLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEG-----RAGLMWDVESRRRQRLLAWSFKCWVILR------WENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLV 586          
The following BLAST results are available for this feature:
BLAST of NO12G03080.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25729.14.600e-5432.90protein prenyltransferase alpha subunit repeat con... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03080NO12G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03080.2NO12G03080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03080.2.cds1NO12G03080.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03080.2.cds2NO12G03080.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp
CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA
TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT
TGTTTTGCGAAAGACCCGCTCATGTAAGTTTTTGCTCATCTGCTGCGGGG
GACATTACGCCTAGTGTTGATCAGCTTCTTATGATGCCTAACTTACCCGT
TCGCATTATGCTCCGCACGCAGCGACGAGTACGATTTTGTCTTGCTTCCT
TCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTTT
TGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCGA
TATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTCA
AAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACAT
GATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGACA
CGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCTT
AGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGCAAATACAC
TAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTCT
TGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAAG
GATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAGA
GAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAATT
ACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGGG
ATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAAC
GTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTGG
AATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGGCCGCAATG
AATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTCC
TCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCCT
GCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCTT
TCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCAT
CACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGACA
CTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGAA
CTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGTC
TTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACCG
CTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCTACAATGCT
GAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGGG
AGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAAC
GGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCGT
TGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGAG
GGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTTT
TGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTGC
GAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAAG
AGGAAATAGGTGTTAAAAAGATGTAAATGAGAAATTGAAATCACCTGCAG
TAGAAATGTGAGAATACTGCATTACTGAAAGCAAAAATTTAAGGCGACCT
CCACGACACG
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protein sequence of NO12G03080.2

>NO12G03080.2-protein ID=NO12G03080.2-protein|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MAFVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEK
EDMMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFS
KYTKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWCWSQ
QREKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEKGLTLK
IETSDEEKKEEAALWQQEVEFVRGWTGRHVGDMAAMNYLQQVLTHAISVS
PSPPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQSLARL
RSITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRREVAGS
LSSSPFSSSSSSSTSAIATAAAVPPSYHAQITLYNAEMDRGSHYMQGERP
WEGGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKE
NERAALWEELMALEASDSLLFVPPGYKCLLLSRGMCERDGGRDERGTEVR
RGRGNRC*
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mRNA from alignment at chr12:847245..849291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica)
CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT TGTTTTGCGAAAGACCCGCTCATGTAAGTTTTTGCTCATCTGCTGCGGGG GACATTACGCCTAGTGTTGATCAGCTTCTTATGATGCCTAACTTACCCGT TCGCATTATGCTCCGCACGCAGCGACGAGTACGATTTTGTCTTGCTTCCT TCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTTT TGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCGA TATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTCA AAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACAT GATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGACA CGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCTT AGGTAAGGAGTGGAGGATGCGTGGACGAGGCGCATGCAGCTTTTTAAAAT AATGGGAGATAATTTATTTTGTTTCCCCCTGGCCTGTCATACGGTACACA TACCCCTTTACGTTTGTCATCACCCCTGCATACAATCAGTGCGGTCGATG AGCTGGCCTTCATTGACCTGATCTTCAGCAAATACACTAAGAAAGCCTCT GCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTCTTGGAGCATTTGGC AAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAAGGATCAGCATCACC AGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAGAGAAGGAACTGGAA GTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAATTACCATGCCTGGAC GCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGGGATATGTGATGTCC ACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAACGTCAGACGAGGAG AAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTGGAATTTGTGCGGGG ATGGACTGGGCGTCATGTGGGGGATATGGCCGCAATGAATTACTTGCAGC AGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTCCTCCCTCTTCCTCT TCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCCTGCATCTCCTGCTC CTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCTTTCGAAAAGCGAGA GGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCATCACTTCTTCCCTA AATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGACACTTATCCAGGTCA CGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGAACTATGGATGGCGA CAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGTCTTCTCCTTTTTCT TCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACCGCTGCCGCCGTTCC CCCCTCCTACCATGCTCAGATTACTCTCTACAATGCTGAGATGGACCGCG GTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGGGAGGAGAGGGAGGG AGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAACGGAAGCAGAAGCT TAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCGTTGGAGGAAAGGAG AAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGAGGGCAGCATTATGG GAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTTTTGTTTGTCCCTCC AGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTGCGAACGGGACGGGG GGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAAGAGGAAATAGGTGT TAAAAAGATGTAAATGAGAAATTGAAATCACCTGCAGTAGAAATGTGAGA ATACTGCATTACTGAAAGCAAAAATTTAAGGCGACCTCCACGACACG
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Coding sequence (CDS) from alignment at chr12:847245..849291-

>NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica)
ATGGCTTTTGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACT
GAAACCGATATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCG
CCTCTTCAAAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAA
GAGGACATGATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAA
TCCTGACACGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGG
GCTACCTTAGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGC
AAATACACTAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTC
GCGGCTCTTGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTG
GGGAGAAGGATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAG
CAGCGAGAGAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCC
CAAGAATTACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGG
ACGTAGGGATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAA
ATAGAAACGTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCA
GGAAGTGGAATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGG
CCGCAATGAATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCT
CCTTCTCCTCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTG
CTCCTCCTGCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCA
CTCCCCTTTCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTT
CGTTCCATCACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATC
CCTCGACACTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCC
TGCTGGAACTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCC
CTCTCGTCTTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTAT
TGCCACCGCTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCT
ACAATGCTGAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCG
TGGGAGGGAGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGC
AGCGAAACGGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGG
TACTTCGTTGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAG
AATGAGAGGGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGA
CTCTCTTTTGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAG
GCATGTGCGAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGG
AGAGGAAGAGGAAATAGGTGTTAA
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Synonyms
Publications