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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:847245..849291 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03080.2 vs.
Match: EWM25729.1 (protein prenyltransferase alpha subunit repeat containing 1 [Nannochloropsis gaditana]) HSP 1 Score: 221.9 bits (564), Expect = 4.600e-54 Identity = 178/541 (32.90%), Postives = 259/541 (47.87%), Query Frame = 0
Query: 3 FVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEKEDMMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFSKYTKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWC-----------WSQQREKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEK-------------------------GLTLKIETSDEEKKEEA-------ALWQ-QEVEFVRGW-TGRHVGDMAAMNYLQQVLTHAISVSPSPPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQS---------LARLRSITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRR-EVAGSLSSSPFSSSSSSSTSAIAT------AAAVPPSYHAQITLYNAEMDRGSHYMQGERPWEGGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKENER--AALWEELMALEASDSLLFVPPGYKCLL 481
F+LE HKLGIATWA+K I++EAL + A ++A + D + + TRALLLIN D Y+AWN+RKRL++ G L A +E++F+D++ K++KK SAWAHRRWCV+ +LE + R+ + Q+Q C W + +EKE+ +T +IA P+NY+AWT R V+ +D+ + D + E G + + DEE +E+ W ++ E + W TG +GDM+A ++LQQVLT ++ PS + + S + S+ +R+Q S A + L L N LD YPG ESLWYQRRG L L A MRR AG + S+ A +P +E+ R SHY+QG PWEG GL+WD ++R+Q+L AW+ +CW++LR WE +GA + L EEL +LEAS + +PPGYK L+
Sbjct: 59 FLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVIL-QDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLT-LLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEG-----RAGLMWDVESRRRQRLLAWSFKCWVILR------WENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLV 586
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT TGTTTTGCGAAAGACCCGCTCATGTAAGTTTTTGCTCATCTGCTGCGGGG GACATTACGCCTAGTGTTGATCAGCTTCTTATGATGCCTAACTTACCCGT TCGCATTATGCTCCGCACGCAGCGACGAGTACGATTTTGTCTTGCTTCCT TCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTTT TGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCGA TATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTCA AAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACAT GATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGACA CGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCTT AGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGCAAATACAC TAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTCT TGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAAG GATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAGA GAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAATT ACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGGG ATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAAC GTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTGG AATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGGCCGCAATG AATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTCC TCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCCT GCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCTT TCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCAT CACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGACA CTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGAA CTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGTC TTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACCG CTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCTACAATGCT GAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGGG AGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAAC GGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCGT TGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGAG GGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTTT TGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTGC GAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAAG AGGAAATAGGTGTTAAAAAGATGTAAATGAGAAATTGAAATCACCTGCAG TAGAAATGTGAGAATACTGCATTACTGAAAGCAAAAATTTAAGGCGACCT CCACGACACG back to topprotein sequence of NO12G03080.2 >NO12G03080.2-protein ID=NO12G03080.2-protein|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp MAFVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEK EDMMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFS KYTKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWCWSQ QREKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEKGLTLK IETSDEEKKEEAALWQQEVEFVRGWTGRHVGDMAAMNYLQQVLTHAISVS PSPPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQSLARL RSITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRREVAGS LSSSPFSSSSSSSTSAIATAAAVPPSYHAQITLYNAEMDRGSHYMQGERP WEGGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKE NERAALWEELMALEASDSLLFVPPGYKCLLLSRGMCERDGGRDERGTEVR RGRGNRC* back to topmRNA from alignment at chr12:847245..849291- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica) CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA
TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT
TGTTTTGCGAAAGACCCGCTCATGTAAGTTTTTGCTCATCTGCTGCGGGG
GACATTACGCCTAGTGTTGATCAGCTTCTTATGATGCCTAACTTACCCGT
TCGCATTATGCTCCGCACGCAGCGACGAGTACGATTTTGTCTTGCTTCCT
TCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTTT
TGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCGA
TATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTCA
AAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACAT
GATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGACA
CGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCTT
AGGTAAGGAGTGGAGGATGCGTGGACGAGGCGCATGCAGCTTTTTAAAAT
AATGGGAGATAATTTATTTTGTTTCCCCCTGGCCTGTCATACGGTACACA
TACCCCTTTACGTTTGTCATCACCCCTGCATACAATCAGTGCGGTCGATG
AGCTGGCCTTCATTGACCTGATCTTCAGCAAATACACTAAGAAAGCCTCT
GCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTCTTGGAGCATTTGGC
AAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAAGGATCAGCATCACC
AGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAGAGAAGGAACTGGAA
GTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAATTACCATGCCTGGAC
GCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGGGATATGTGATGTCC
ACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAACGTCAGACGAGGAG
AAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTGGAATTTGTGCGGGG
ATGGACTGGGCGTCATGTGGGGGATATGGCCGCAATGAATTACTTGCAGC
AGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTCCTCCCTCTTCCTCT
TCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCCTGCATCTCCTGCTC
CTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCTTTCGAAAAGCGAGA
GGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCATCACTTCTTCCCTA
AATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGACACTTATCCAGGTCA
CGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGAACTATGGATGGCGA
CAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGTCTTCTCCTTTTTCT
TCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACCGCTGCCGCCGTTCC
CCCCTCCTACCATGCTCAGATTACTCTCTACAATGCTGAGATGGACCGCG
GTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGGGAGGAGAGGGAGGG
AGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAACGGAAGCAGAAGCT
TAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCGTTGGAGGAAAGGAG
AAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGAGGGCAGCATTATGG
GAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTTTTGTTTGTCCCTCC
AGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTGCGAACGGGACGGGG
GGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAAGAGGAAATAGGTGT
TAAAAAGATGTAAATGAGAAATTGAAATCACCTGCAGTAGAAATGTGAGA
ATACTGCATTACTGAAAGCAAAAATTTAAGGCGACCTCCACGACACG back to topCoding sequence (CDS) from alignment at chr12:847245..849291- >NO12G03080.2 ID=NO12G03080.2|Name=NO12G03080.2|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica) ATGGCTTTTGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACT GAAACCGATATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCG CCTCTTCAAAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAA GAGGACATGATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAA TCCTGACACGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGG GCTACCTTAGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGC AAATACACTAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTC GCGGCTCTTGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTG GGGAGAAGGATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAG CAGCGAGAGAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCC CAAGAATTACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGG ACGTAGGGATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAA ATAGAAACGTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCA GGAAGTGGAATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGG CCGCAATGAATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCT CCTTCTCCTCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTG CTCCTCCTGCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCA CTCCCCTTTCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTT CGTTCCATCACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATC CCTCGACACTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCC TGCTGGAACTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCC CTCTCGTCTTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTAT TGCCACCGCTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCT ACAATGCTGAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCG TGGGAGGGAGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGC AGCGAAACGGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGG TACTTCGTTGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAG AATGAGAGGGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGA CTCTCTTTTGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAG GCATGTGCGAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGG AGAGGAAGAGGAAATAGGTGTTAA back to top
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