NO12G03070.1, NO12G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03070.1
Unique NameNO12G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr12:845843..847228 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:845843..847228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03070.1 vs.
Match: EWM25737.1 (hypothetical protein Naga_100087g9 [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 2.000e-49
Identity = 111/169 (65.68%), Postives = 129/169 (76.33%), Query Frame = 0 
Query:  127 FTLFLAFALFATTTQAFFPSSPCFQLRSCRSCRVSMSATTVPPLAAPAAAAAKP-RPRREILIEQMIESNGGYMARVKVQNFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYILSKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVEGVAAELR 295
            F L LA  L    T AF  S     +R    CRV MS+  VPP    + AAA P RPRREI I Q+IESNGGYMA+V+V+NFKD TEHTVITSKELY ET  LAGKT +++P+EDY++ VFK+I+ KG+ LTRTEGMIDAG+FPINYFSVSQLAIF+DDTVEGVAAELR
Sbjct:   11 FALLLALLL---PTDAFVSSPVLHGVRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAELR 176
The following BLAST results are available for this feature:
BLAST of NO12G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25737.12.000e-4965.68hypothetical protein Naga_100087g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03070NO12G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03070.1NO12G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03070.1.cds1NO12G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03070.1 ID=NO12G03070.1|Name=NO12G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
GGGGGACTTGTGTGCTGCGCGCATGTTAGCGGTTAAGACGAGAAGGGCCT
TCACTCAAGCTGTATTAGCGACCATAGCATGGCGTAGGAGAAGAAATGTA
CTCCGTTGCATTCCTTTAATGTCTCTCATCAGGTCCACAAAAGGACGCCT
GCGGAGCTGATAAACGCGTGCACGAGCCACAAAGTACGTCAGAAAATCAT
GTGTCTGGCATGGTACTGGTCTCGGTGCGACGGACTTCAAACGTGAGGCG
TGTCTTCGTATGGGCAGGGGCCCGCTCCCGCACGGCGATTGAGATTCCCC
TCGCCGTTCAAAAGGAGGACCCCTTCTCTGTGTTCTTGCTTCTCATTGTC
CATTCCAACACCCAGTCCACGCTTTCTCCTCGACGACCAACGCGCTTCCT
TTCCCCAAGCTATTCTCTCTTCCGCAATCACTTAACCCTCTCCTCCACCG
ACACTCACATTCTGGCACACTCAGGTCAAATATCTAGCGGCGTTCGCCCA
GTCTGCACTTCAACTTCACCAGCTTTTTTACCCTTAGCCATGCCCGCCTG
TACACCCGCCACGGCACGGTTGGCCACGCCGATGCTCTTCACCCTCTTTC
TCGCTTTCGCCCTCTTTGCCACGACGACGCAGGCCTTCTTCCCCTCGTCC
CCCTGCTTCCAACTCCGCAGCTGCAGGAGTTGCCGAGTCTCCATGTCCGC
CACCACCGTTCCCCCCCTTGCTGCCCCCGCCGCCGCCGCCGCCAAGCCTC
GTCCTCGTCGGGAGATTCTCATCGAACAAATGATTGAAAGCAATGGTGGA
TATATGGCCCGCGTGAAAGTGCAGAACTTCAAGGACGCGACCGAGCACAC
GGTCATTACCAGCAAGGAGCTATACCTGGAGACAGTAACCTTGGCAGGGA
AGACGGTCGAGGACGTGCCGGTGGAGGATTATTTCAAGGCTGTGTTTAAG
TATATTCTCAGCAAAGGCATGGCTCTGACTAGGACAGAGGGCATGATCGA
CGCAGGCATTTTCCCGATCAACTACTTCAGTGTTTCGCAGTTGGCCATTT
TCATGGATGATACCGTTGAGGGGGTTGCGGCGGAGCTTCGGTAGGTATGA
GCAGAACGGAGAAAAGAGAGCGAAGGATGAAGAGGCTTAGGCTTGTGTGT
CAGAAAGGAAGACAGATGGGTAGGAGGGGTAGAAAAAAAGAAGAGAAGTG
GGATAAGGCATTTTTGTAAGGCGCCGAAAAGAGGAGCAGCAGGGACGGGA
ATGGCTAAAGAGGCCGTGTTTATCTTCCCAAGAAGTCGGAGGGAGGGCAT
AGGGGGGGAGGATCACAAGCAATAGGTAACGCTATTTGCCATTCAAACCA
GCCTAGTGCAATAGAGAAAAGAAAAACAAGAGGAAG
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protein sequence of NO12G03070.1

>NO12G03070.1-protein ID=NO12G03070.1-protein|Name=NO12G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MVLVSVRRTSNVRRVFVWAGARSRTAIEIPLAVQKEDPFSVFLLLIVHSN
TQSTLSPRRPTRFLSPSYSLFRNHLTLSSTDTHILAHSGQISSGVRPVCT
STSPAFLPLAMPACTPATARLATPMLFTLFLAFALFATTTQAFFPSSPCF
QLRSCRSCRVSMSATTVPPLAAPAAAAAKPRPRREILIEQMIESNGGYMA
RVKVQNFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYIL
SKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVEGVAAELR*
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mRNA from alignment at chr12:845843..847228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03070.1 ID=NO12G03070.1|Name=NO12G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr12:845843..847228+ (Nannochloropsis oceanica)
GGGGGACTTGTGTGCTGCGCGCATGTTAGCGGTTAAGACGAGAAGGGCCT
TCACTCAAGCTGTATTAGCGACCATAGCATGGCGTAGGAGAAGAAATGTA
CTCCGTTGCATTCCTTTAATGTCTCTCATCAGGTCCACAAAAGGACGCCT
GCGGAGCTGATAAACGCGTGCACGAGCCACAAAGTACGTCAGAAAATCAT
GTGTCTGGCATGGTACTGGTCTCGGTGCGACGGACTTCAAACGTGAGGCG
TGTCTTCGTATGGGCAGGGGCCCGCTCCCGCACGGCGATTGAGATTCCCC
TCGCCGTTCAAAAGGAGGACCCCTTCTCTGTGTTCTTGCTTCTCATTGTC
CATTCCAACACCCAGTCCACGCTTTCTCCTCGACGACCAACGCGCTTCCT
TTCCCCAAGCTATTCTCTCTTCCGCAATCACTTAACCCTCTCCTCCACCG
ACACTCACATTCTGGCACACTCAGGTCAAATATCTAGCGGCGTTCGCCCA
GTCTGCACTTCAACTTCACCAGCTTTTTTACCCTTAGCCATGCCCGCCTG
TACACCCGCCACGGCACGGTTGGCCACGCCGATGCTCTTCACCCTCTTTC
TCGCTTTCGCCCTCTTTGCCACGACGACGCAGGCCTTCTTCCCCTCGTCC
CCCTGCTTCCAACTCCGCAGCTGCAGGAGTTGCCGAGTCTCCATGTCCGC
CACCACCGTTCCCCCCCTTGCTGCCCCCGCCGCCGCCGCCGCCAAGCCTC
GTCCTCGTCGGGAGATTCTCATCGAACAAATGATTGAAAGCAATGGTGGA
TATATGGCCCGCGTGAAAGTGCAGAACTTCAAGGACGCGACCGAGCACAC
GGTCATTACCAGCAAGGAGCTATACCTGGAGACAGTAACCTTGGCAGGGA
AGACGGTCGAGGACGTGCCGGTGGAGGATTATTTCAAGGCTGTGTTTAAG
TATATTCTCAGCAAAGGCATGGCTCTGACTAGGACAGAGGGCATGATCGA
CGCAGGCATTTTCCCGATCAACTACTTCAGTGTTTCGCAGTTGGCCATTT
TCATGGATGATACCGTTGAGGGGGTTGCGGCGGAGCTTCGGTAGGTATGA
GCAGAACGGAGAAAAGAGAGCGAAGGATGAAGAGGCTTAGGCTTGTGTGT
CAGAAAGGAAGACAGATGGGTAGGAGGGGTAGAAAAAAAGAAGAGAAGTG
GGATAAGGCATTTTTGTAAGGCGCCGAAAAGAGGAGCAGCAGGGACGGGA
ATGGCTAAAGAGGCCGTGTTTATCTTCCCAAGAAGTCGGAGGGAGGGCAT
AGGGGGGGAGGATCACAAGCAATAGGTAACGCTATTTGCCATTCAAACCA
GCCTAGTGCAATAGAGAAAAGAAAAACAAGAGGAAG
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Coding sequence (CDS) from alignment at chr12:845843..847228+

>NO12G03070.1 ID=NO12G03070.1|Name=NO12G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr12:845843..847228+ (Nannochloropsis oceanica)
ATGGTACTGGTCTCGGTGCGACGGACTTCAAACGTGAGGCGTGTCTTCGT
ATGGGCAGGGGCCCGCTCCCGCACGGCGATTGAGATTCCCCTCGCCGTTC
AAAAGGAGGACCCCTTCTCTGTGTTCTTGCTTCTCATTGTCCATTCCAAC
ACCCAGTCCACGCTTTCTCCTCGACGACCAACGCGCTTCCTTTCCCCAAG
CTATTCTCTCTTCCGCAATCACTTAACCCTCTCCTCCACCGACACTCACA
TTCTGGCACACTCAGGTCAAATATCTAGCGGCGTTCGCCCAGTCTGCACT
TCAACTTCACCAGCTTTTTTACCCTTAGCCATGCCCGCCTGTACACCCGC
CACGGCACGGTTGGCCACGCCGATGCTCTTCACCCTCTTTCTCGCTTTCG
CCCTCTTTGCCACGACGACGCAGGCCTTCTTCCCCTCGTCCCCCTGCTTC
CAACTCCGCAGCTGCAGGAGTTGCCGAGTCTCCATGTCCGCCACCACCGT
TCCCCCCCTTGCTGCCCCCGCCGCCGCCGCCGCCAAGCCTCGTCCTCGTC
GGGAGATTCTCATCGAACAAATGATTGAAAGCAATGGTGGATATATGGCC
CGCGTGAAAGTGCAGAACTTCAAGGACGCGACCGAGCACACGGTCATTAC
CAGCAAGGAGCTATACCTGGAGACAGTAACCTTGGCAGGGAAGACGGTCG
AGGACGTGCCGGTGGAGGATTATTTCAAGGCTGTGTTTAAGTATATTCTC
AGCAAAGGCATGGCTCTGACTAGGACAGAGGGCATGATCGACGCAGGCAT
TTTCCCGATCAACTACTTCAGTGTTTCGCAGTTGGCCATTTTCATGGATG
ATACCGTTGAGGGGGTTGCGGCGGAGCTTCGGTAG
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Synonyms
Publications