NO12G03040.1, NO12G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03040.1
Unique NameNO12G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2153
Alignment locationchr12:836321..838473 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:836321..838473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03040.1 vs.
Match: XP_005854870.1 (L-galactono-1,4-lactone dehydrogenase, partial [Nannochloropsis gaditana CCMP526]; EKU21491.1 L-galactono-1,4-lactone dehydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 896.0 bits (2314), Expect = 6.900e-257
Identity = 460/637 (72.21%), Postives = 513/637 (80.53%), Query Frame = 0 
Query:    1 MRGQQLLLLRRAS---FRTSTSTGQPLFRGRHPFSTTPPSTIPSNPTHPPPTAEVSPLPPPLPDVPVVAPGPGSANLYKAAAVVLGIGTGYAIANVTDESLGFFWPNPKRDATARGFSTEASVTNWSATHAVDPKKYYEPHNMEELELLVRDAHAKGQRIRPVGTALSPNGLGMDKDGMVCLSHLDKVLDIDTKTQTVTVQAGARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQIVRMKLVTPASGVIELSETQDPELFGLAKVGLGALGIVSELTLKCIPQHELLERTYVVNSFKELKRDHHRLLREYRHVRYMWLPHTDSIVVVISNPYEEGVTPLPPSFQTPSIPESVKLTAVRSLLLSHPACRLSPTDAAALGFTELRDALLDLAPLDPSWVGRVNAAEANYWKASEGYRKGGSTEILGFDCGGQQWVLEVAFPIGRLPKEGEKEGGRKGLNWW---GGGK---GETETKDLEFVNRLRTMIREKNLPAPCPIEQRWTASSTAGMSPASSRDREEVFSWVGVIMYLPPGQDEDGREEIGKTFRRYVAEMEPLCEEFGALPHWAKIEVPKEEGARERLKARLAGRYPVAAFNIVRKGFDPKGVLGNEMVEKLFAEG 629
            MRGQ  +LLR A    F  STST     R   P      ST  +    PPP  E  P   PLPD  VV P PGSA  YKA AVVLG+GTGYAIAN TD+ LGF WPNPKR+ATARG++T+ASVTNWSATHAV+PK+YYEP ++EELE LVRDAHAKGQRIRPVGTALSPNG+GMD++GMVCL+HLDK++ +D + QTVTVQAGARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQIVRMK+VTPASGV+ELSET+D ELF LAKVGLGALG+VSELTLKC+PQHELLE TYVVNS +ELKRDHHRLL+ YRHVRYMWLPHT+S+VVV+SNPYEEG T LPPS   P +P   KL  +R+LLLSHPA RLSP + ++LGFTELRDALL + PLD  WV RVN AEA +W+ S+GYR+G STEILGFDCGGQQWVLEVAFPIG LP     + G+ G   W   G  K    E  T DL+FV+RLR +IREKNLPAPCPIEQRWTASSTA MSPA S DR  VFSWVGVI+YLPPGQ+ + REEIG  FR YV  MEPLCEEF A PHWAKIEVP+E G RERLKARLA RYPV AFN VRKGFDPKGVLGN+ V+ LFA+G
Sbjct:    9 MRGQYFVLLRHARPRMFALSTSTKPACHR---PCPPRQLSTNGAGKNTPPPPVEPPPPQKPLPDASVVEPAPGSAFYYKAVAVVLGLGTGYAIANYTDQGLGFIWPNPKREATARGYTTDASVTNWSATHAVEPKRYYEPSSVEELEALVRDAHAKGQRIRPVGTALSPNGIGMDEEGMVCLNHLDKIIQVDAEAQTVTVQAGARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQIVRMKVVTPASGVMELSETRDSELFRLAKVGLGALGVVSELTLKCVPQHELLEHTYVVNSLRELKRDHHRLLQSYRHVRYMWLPHTESVVVVVSNPYEEGKTALPPSSHRPPVPVDAKLATLRALLLSHPASRLSPAEISSLGFTELRDALLGMDPLDWRWVARVNGAEARFWEQSQGYRRGPSTEILGFDCGGQQWVLEVAFPIGPLPALESVDTGKGGRRRWFSLGQEKRRMPEAATPDLDFVDRLRRLIREKNLPAPCPIEQRWTASSTAPMSPAYSSDRNAVFSWVGVIIYLPPGQEPERREEIGTAFREYVEAMEPLCEEFEAFPHWAKIEVPEEAGRRERLKARLAKRYPVPAFNYVRKGFDPKGVLGNKTVDVLFADG 642
The following BLAST results are available for this feature:
BLAST of NO12G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854870.16.900e-25772.21L-galactono-1,4-lactone dehydrogenase, partial [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03040NO12G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03040.1NO12G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03040.1.cds1NO12G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03040.1 ID=NO12G03040.1|Name=NO12G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
CATTGAGGGTGGTAAGCATCCAAGGGCAGGAACGCCACAGGAGGTTAATA
TGGGCCGTCATCATCCAATCATAAATCTCGCCACGCACTCAGCTCCAAAC
AAACGAATACACGCAGCGCGCTCACCACCTTTTATCCGCACAACAATAAA
GGCTCCCCCTAAGTGGTCAAGCCATGCGTGGGCAACAACTTTTGCTCCTC
CGCCGGGCCAGTTTTCGAACATCAACATCAACCGGCCAGCCCCTCTTTCG
TGGTCGTCACCCTTTTTCGACTACCCCGCCGTCCACCATCCCTAGCAATC
CCACCCACCCTCCTCCCACTGCAGAGGTCTCTCCCCTTCCTCCACCCCTG
CCTGACGTCCCTGTCGTGGCGCCTGGGCCGGGTTCTGCCAATTTGTACAA
GGCTGCGGCAGTAGTTTTAGGTATCGGGACTGGATACGCAATTGCCAATG
TGACGGATGAAAGCCTGGGCTTCTTTTGGCCTAACCCAAAGAGGGACGCA
ACAGCCCGCGGGTTTTCGACGGAGGCCAGTGTGACCAACTGGTCGGCAAC
ACATGCGGTGGACCCGAAGAAATATTACGAGCCGCATAACATGGAGGAGC
TTGAGTTGCTCGTGCGAGATGCTCACGCCAAGGGCCAACGGATTCGGCCT
GTCGGAACAGCACTCTCGCCCAACGGCCTGGGAATGGATAAGGATGGGAT
GGTGTGCCTCAGTCATTTGGATAAGGTGCTGGATATTGACACAAAGACAC
AGACCGTCACAGTACAGGCAGGGGCGAGGGTGAGTCAGGTGTTGGAAGCC
TTGGGGAGACACGGGTTGACCTTGCAGAACTTCTCTTCCATTCAGGAGCA
GCAACTAGGGGGTTGGACTCAGGTCGCTGCCCATGGAACAGGCGCGTCTT
TGCCAACGGTGGAGGAGCAGATTGTGCGGATGAAGCTGGTGACGCCTGCG
AGTGGAGTAATTGAATTGAGCGAGACCCAGGACCCCGAGCTGTTCGGGTT
GGCCAAAGTGGGTTTGGGAGCCTTGGGGATTGTGTCGGAATTGACTCTCA
AATGCATCCCTCAGCATGAATTGCTCGAGAGGACTTACGTGGTGAATAGC
TTCAAGGAGCTGAAAAGAGATCATCACCGGCTACTGAGGGAGTACAGGCA
CGTCAGATATATGTGGCTCCCACATACCGATAGCATCGTTGTCGTCATCT
CCAACCCGTATGAAGAAGGCGTGACCCCCCTTCCTCCCTCTTTTCAGACT
CCCTCCATTCCCGAATCCGTCAAACTGACCGCTGTTCGTTCCCTCCTCCT
GTCACATCCTGCCTGTCGTCTCTCCCCTACGGATGCTGCTGCTCTCGGGT
TCACCGAGCTGCGTGACGCGCTTCTGGACCTTGCGCCTTTAGACCCCAGC
TGGGTCGGGCGTGTGAACGCCGCCGAGGCTAATTATTGGAAGGCGAGTGA
AGGCTATCGCAAGGGAGGTTCGACTGAAATTTTGGGGTTTGACTGCGGGG
GGCAACAATGGGTGTTGGAGGTGGCCTTCCCCATTGGCAGGCTTCCTAAG
GAGGGGGAAAAGGAGGGAGGGAGGAAAGGTTTAAATTGGTGGGGTGGAGG
GAAAGGGGAGACTGAGACAAAGGATTTGGAATTTGTGAATCGCTTGAGGA
CGATGATTCGGGAGAAGAATTTGCCTGCGCCTTGTCCGATCGAGCAGAGG
TGGACGGCGAGTAGTACCGCGGGGATGAGTCCCGCGAGTAGCAGAGATAG
GGAAGAGGTCTTTAGCTGGGTAGGCGTGATAATGTACTTGCCGCCAGGGC
AGGACGAGGACGGGAGGGAGGAGATTGGGAAGACGTTCAGGAGGTACGTG
GCAGAGATGGAGCCGTTGTGTGAGGAGTTTGGGGCTTTGCCGCATTGGGC
CAAGATCGAGGTGCCGAAGGAGGAAGGCGCGAGGGAGCGATTGAAGGCAC
GGTTGGCGGGCAGGTACCCGGTGGCGGCGTTTAATATTGTGAGGAAGGGC
TTTGATCCCAAAGGGGTGTTGGGGAATGAGATGGTGGAGAAGTTGTTTGC
GGAGGGGGGGAAGGAGAGATGAGGGACGAAGGGAGGAGGGAGGGTACAGG
AGAAGAGATGATTTCCACCATAACCATGCAAAAGTAGGTGAGTCTCCTTC
CCA
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protein sequence of NO12G03040.1

>NO12G03040.1-protein ID=NO12G03040.1-protein|Name=NO12G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MRGQQLLLLRRASFRTSTSTGQPLFRGRHPFSTTPPSTIPSNPTHPPPTA
EVSPLPPPLPDVPVVAPGPGSANLYKAAAVVLGIGTGYAIANVTDESLGF
FWPNPKRDATARGFSTEASVTNWSATHAVDPKKYYEPHNMEELELLVRDA
HAKGQRIRPVGTALSPNGLGMDKDGMVCLSHLDKVLDIDTKTQTVTVQAG
ARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQI
VRMKLVTPASGVIELSETQDPELFGLAKVGLGALGIVSELTLKCIPQHEL
LERTYVVNSFKELKRDHHRLLREYRHVRYMWLPHTDSIVVVISNPYEEGV
TPLPPSFQTPSIPESVKLTAVRSLLLSHPACRLSPTDAAALGFTELRDAL
LDLAPLDPSWVGRVNAAEANYWKASEGYRKGGSTEILGFDCGGQQWVLEV
AFPIGRLPKEGEKEGGRKGLNWWGGGKGETETKDLEFVNRLRTMIREKNL
PAPCPIEQRWTASSTAGMSPASSRDREEVFSWVGVIMYLPPGQDEDGREE
IGKTFRRYVAEMEPLCEEFGALPHWAKIEVPKEEGARERLKARLAGRYPV
AAFNIVRKGFDPKGVLGNEMVEKLFAEGGKER*
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mRNA from alignment at chr12:836321..838473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03040.1 ID=NO12G03040.1|Name=NO12G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at chr12:836321..838473+ (Nannochloropsis oceanica)
CATTGAGGGTGGTAAGCATCCAAGGGCAGGAACGCCACAGGAGGTTAATA
TGGGCCGTCATCATCCAATCATAAATCTCGCCACGCACTCAGCTCCAAAC
AAACGAATACACGCAGCGCGCTCACCACCTTTTATCCGCACAACAATAAA
GGCTCCCCCTAAGTGGTCAAGCCATGCGTGGGCAACAACTTTTGCTCCTC
CGCCGGGCCAGTTTTCGAACATCAACATCAACCGGCCAGCCCCTCTTTCG
TGGTCGTCACCCTTTTTCGACTACCCCGCCGTCCACCATCCCTAGCAATC
CCACCCACCCTCCTCCCACTGCAGAGGTCTCTCCCCTTCCTCCACCCCTG
CCTGACGTCCCTGTCGTGGCGCCTGGGCCGGGTTCTGCCAATTTGTACAA
GGCTGCGGCAGTAGTTTTAGGTATCGGGACTGGATACGCAATTGCCAATG
TGACGGATGAAAGCCTGGGCTTCTTTTGGCCTAACCCAAAGAGGGACGCA
ACAGCCCGCGGGTTTTCGACGGAGGCCAGTGTGACCAACTGGTCGGCAAC
ACATGCGGTGGACCCGAAGAAATATTACGAGCCGCATAACATGGAGGAGC
TTGAGTTGCTCGTGCGAGATGCTCACGCCAAGGGCCAACGGATTCGGCCT
GTCGGAACAGCACTCTCGCCCAACGGCCTGGGAATGGATAAGGATGGGAT
GGTGTGCCTCAGTCATTTGGATAAGGTGCTGGATATTGACACAAAGACAC
AGACCGTCACAGTACAGGCAGGGGCGAGGGTGAGTCAGGTGTTGGAAGCC
TTGGGGAGACACGGGTTGACCTTGCAGAACTTCTCTTCCATTCAGGAGCA
GCAACTAGGGGGTTGGACTCAGGTCGCTGCCCATGGAACAGGCGCGTCTT
TGCCAACGGTGGAGGAGCAGATTGTGCGGATGAAGCTGGTGACGCCTGCG
AGTGGAGTAATTGAATTGAGCGAGACCCAGGACCCCGAGCTGTTCGGGTT
GGCCAAAGTGGGTTTGGGAGCCTTGGGGATTGTGTCGGAATTGACTCTCA
AATGCATCCCTCAGCATGAATTGCTCGAGAGGACTTACGTGGTGAATAGC
TTCAAGGAGCTGAAAAGAGATCATCACCGGCTACTGAGGGAGTACAGGCA
CGTCAGATATATGTGGCTCCCACATACCGATAGCATCGTTGTCGTCATCT
CCAACCCGTATGAAGAAGGCGTGACCCCCCTTCCTCCCTCTTTTCAGACT
CCCTCCATTCCCGAATCCGTCAAACTGACCGCTGTTCGTTCCCTCCTCCT
GTCACATCCTGCCTGTCGTCTCTCCCCTACGGATGCTGCTGCTCTCGGGT
TCACCGAGCTGCGTGACGCGCTTCTGGACCTTGCGCCTTTAGACCCCAGC
TGGGTCGGGCGTGTGAACGCCGCCGAGGCTAATTATTGGAAGGCGAGTGA
AGGCTATCGCAAGGGAGGTTCGACTGAAATTTTGGGGTTTGACTGCGGGG
GGCAACAATGGGTGTTGGAGGTGGCCTTCCCCATTGGCAGGCTTCCTAAG
GAGGGGGAAAAGGAGGGAGGGAGGAAAGGTTTAAATTGGTGGGGTGGAGG
GAAAGGGGAGACTGAGACAAAGGATTTGGAATTTGTGAATCGCTTGAGGA
CGATGATTCGGGAGAAGAATTTGCCTGCGCCTTGTCCGATCGAGCAGAGG
TGGACGGCGAGTAGTACCGCGGGGATGAGTCCCGCGAGTAGCAGAGATAG
GGAAGAGGTCTTTAGCTGGGTAGGCGTGATAATGTACTTGCCGCCAGGGC
AGGACGAGGACGGGAGGGAGGAGATTGGGAAGACGTTCAGGAGGTACGTG
GCAGAGATGGAGCCGTTGTGTGAGGAGTTTGGGGCTTTGCCGCATTGGGC
CAAGATCGAGGTGCCGAAGGAGGAAGGCGCGAGGGAGCGATTGAAGGCAC
GGTTGGCGGGCAGGTACCCGGTGGCGGCGTTTAATATTGTGAGGAAGGGC
TTTGATCCCAAAGGGGTGTTGGGGAATGAGATGGTGGAGAAGTTGTTTGC
GGAGGGGGGGAAGGAGAGATGAGGGACGAAGGGAGGAGGGAGGGTACAGG
AGAAGAGATGATTTCCACCATAACCATGCAAAAGTAGGTGAGTCTCCTTC
CCA
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Coding sequence (CDS) from alignment at chr12:836321..838473+

>NO12G03040.1 ID=NO12G03040.1|Name=NO12G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr12:836321..838473+ (Nannochloropsis oceanica)
ATGCGTGGGCAACAACTTTTGCTCCTCCGCCGGGCCAGTTTTCGAACATC
AACATCAACCGGCCAGCCCCTCTTTCGTGGTCGTCACCCTTTTTCGACTA
CCCCGCCGTCCACCATCCCTAGCAATCCCACCCACCCTCCTCCCACTGCA
GAGGTCTCTCCCCTTCCTCCACCCCTGCCTGACGTCCCTGTCGTGGCGCC
TGGGCCGGGTTCTGCCAATTTGTACAAGGCTGCGGCAGTAGTTTTAGGTA
TCGGGACTGGATACGCAATTGCCAATGTGACGGATGAAAGCCTGGGCTTC
TTTTGGCCTAACCCAAAGAGGGACGCAACAGCCCGCGGGTTTTCGACGGA
GGCCAGTGTGACCAACTGGTCGGCAACACATGCGGTGGACCCGAAGAAAT
ATTACGAGCCGCATAACATGGAGGAGCTTGAGTTGCTCGTGCGAGATGCT
CACGCCAAGGGCCAACGGATTCGGCCTGTCGGAACAGCACTCTCGCCCAA
CGGCCTGGGAATGGATAAGGATGGGATGGTGTGCCTCAGTCATTTGGATA
AGGTGCTGGATATTGACACAAAGACACAGACCGTCACAGTACAGGCAGGG
GCGAGGGTGAGTCAGGTGTTGGAAGCCTTGGGGAGACACGGGTTGACCTT
GCAGAACTTCTCTTCCATTCAGGAGCAGCAACTAGGGGGTTGGACTCAGG
TCGCTGCCCATGGAACAGGCGCGTCTTTGCCAACGGTGGAGGAGCAGATT
GTGCGGATGAAGCTGGTGACGCCTGCGAGTGGAGTAATTGAATTGAGCGA
GACCCAGGACCCCGAGCTGTTCGGGTTGGCCAAAGTGGGTTTGGGAGCCT
TGGGGATTGTGTCGGAATTGACTCTCAAATGCATCCCTCAGCATGAATTG
CTCGAGAGGACTTACGTGGTGAATAGCTTCAAGGAGCTGAAAAGAGATCA
TCACCGGCTACTGAGGGAGTACAGGCACGTCAGATATATGTGGCTCCCAC
ATACCGATAGCATCGTTGTCGTCATCTCCAACCCGTATGAAGAAGGCGTG
ACCCCCCTTCCTCCCTCTTTTCAGACTCCCTCCATTCCCGAATCCGTCAA
ACTGACCGCTGTTCGTTCCCTCCTCCTGTCACATCCTGCCTGTCGTCTCT
CCCCTACGGATGCTGCTGCTCTCGGGTTCACCGAGCTGCGTGACGCGCTT
CTGGACCTTGCGCCTTTAGACCCCAGCTGGGTCGGGCGTGTGAACGCCGC
CGAGGCTAATTATTGGAAGGCGAGTGAAGGCTATCGCAAGGGAGGTTCGA
CTGAAATTTTGGGGTTTGACTGCGGGGGGCAACAATGGGTGTTGGAGGTG
GCCTTCCCCATTGGCAGGCTTCCTAAGGAGGGGGAAAAGGAGGGAGGGAG
GAAAGGTTTAAATTGGTGGGGTGGAGGGAAAGGGGAGACTGAGACAAAGG
ATTTGGAATTTGTGAATCGCTTGAGGACGATGATTCGGGAGAAGAATTTG
CCTGCGCCTTGTCCGATCGAGCAGAGGTGGACGGCGAGTAGTACCGCGGG
GATGAGTCCCGCGAGTAGCAGAGATAGGGAAGAGGTCTTTAGCTGGGTAG
GCGTGATAATGTACTTGCCGCCAGGGCAGGACGAGGACGGGAGGGAGGAG
ATTGGGAAGACGTTCAGGAGGTACGTGGCAGAGATGGAGCCGTTGTGTGA
GGAGTTTGGGGCTTTGCCGCATTGGGCCAAGATCGAGGTGCCGAAGGAGG
AAGGCGCGAGGGAGCGATTGAAGGCACGGTTGGCGGGCAGGTACCCGGTG
GCGGCGTTTAATATTGTGAGGAAGGGCTTTGATCCCAAAGGGGTGTTGGG
GAATGAGATGGTGGAGAAGTTGTTTGCGGAGGGGGGGAAGGAGAGATGA
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Synonyms
Publications