NO12G02990.2, NO12G02990.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02990.2
Unique NameNO12G02990.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2437
Alignment locationchr12:823760..826542 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:823760..826542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02990.2 vs.
Match: EWM25739.1 (component of the counting factor complex [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 1.500e-94
Identity = 173/252 (68.65%), Postives = 200/252 (79.37%), Query Frame = 0 
Query:    2 IYLRSDDDPSYRTEMSGEALLRGMFDARQGEMTLQWHTGDFALDEIAPNHNVCPALDSVEADASHSREWAEYNNSQWVQELNARMAVELPGYSYEYLLDCLGTTACTGRPFPPTLTETTLQDAFVHSAWMRSFKFVWNEAYYSKLGIGPLALELLENMRGRARARGREGGRTALKFGLFLGHDTSVLPLLAAWKVWDGEWPPYAAILVIELYEAKVEGEESGERRGQEGDQKEHLFRMLYRGKELVMEGCEG 254
            +YLRSDDDPS+RTEMSGEAL++ MF+AR+ ++TL+WHTGDFALDEIAPNHNVCPAL  VE +A  S EWA YN S  V+EL+ARM  ELPGY +E++LDCLGTT CTGR FPP+LT  TL DAFVH+A  RSFKF WN+AYYSKLGIGPLA ELLENM+ RA      GGR+ LKFGLFLGHDTSVLPLLAAW VWDG WPPYAA+L +ELY A   G       G EG+ K H FRMLY G+EL++E C+G
Sbjct:  169 LYLRSDDDPSFRTEMSGEALVQSMFEARREDVTLRWHTGDFALDEIAPNHNVCPALSGVEREAMASAEWAAYNQSAAVRELDARMERELPGYQWEHMLDCLGTTVCTGRAFPPSLTHRTLADAFVHAARTRSFKFAWNDAYYSKLGIGPLARELLENMQARA------GGRSHLKFGLFLGHDTSVLPLLAAWGVWDGAWPPYAAVLAVELYAADGTG-----HGGVEGEGK-HFFRMLYGGRELILEECQG 408
The following BLAST results are available for this feature:
BLAST of NO12G02990.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25739.11.500e-9468.65component of the counting factor complex [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02990NO12G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02990.2NO12G02990.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02990.2.cds1NO12G02990.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02990.2.cds2NO12G02990.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02990.2 ID=NO12G02990.2|Name=NO12G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=2437bp
ACTACAAACACGGCCACAGCATGATATATCTCCCAACCATCCTTCTCATG
TTTGCCGACAGCCTCCTTTCCCCGTCTCCAAGCCCAACAAAAATTTACGC
CCTAGCCGCCTTTCTTCCATATTCTTTTTCACGCATGACGGGAACGCAGC
AACCGACCGCATCATGACCAACGCACCGCAGCAGCCGCTGCTCGCGATGG
CAATAGCAGCAGCCTTTGTGGTTTCCGAAGCGTTTCCAACTGCGGGCGTA
AGGCACGATGCTTGGCTCACGGGCAGCTCGACTGGCTTCCGAAAGGAGAC
GCAAGACCAAGACGGCATCATATTTGACAAGCGCAAATTTGCATACTGCA
ACAGCCCCAACAACGTCACCTTCCCCCCACTTGATACCTCATACTCCGAC
AAACATCCGGGCCTCAAGCTGCTGCAAGTCCAAGCCATCGCACGACACGG
CTCCCGCGTCCCTTATATCAAATATATGGACTGTTGGGACGGTTACGGGT
TTAAATGGGATTGTAATGTGACCGAGATGTCGATCCCCTCGCCCAAGGAC
AAGGGGAATGATGGTATGAGGATAGGGAGGAGTGGGAGTAGCAAGGGAGG
AAGTAAGGGGGAAGGCCTCGAGCCAAGCTCACACTCATAAAATACAGCCG
ACCTGCGCACTTCATCTTCCGCACAATTTACAATGCCCTTCTGCCCCCCC
TCACCCTTTGCCCCTCCTACGGGGCGCCTGTCACCTCGACTGTGCCATGC
TGTCTGAATACTGCTTGCTAACGCATACCCAGTCACTCACCCACATCGCA
TCTGTACGCCCACAGCTCGATCCGCCCCCTTCATCTTCCGCAAGATCTAC
GACGGCTCCCCCACCATCTTAGGGGGTACATGCCATCTCGGCCAGCTCGT
TGTTGAGGGCTACGACCAAGAAGCCGCCAATGGCGAGGCCCTCGGCAAAG
CGTACATAGGGCATGGCCCGCTCAATCTCTTCCACACACCAAACTTGGGC
GCAGTCACGGGCGAAATGATTTACCTGCGTTCCGACGACGACCCGTCGTA
CCGCACCGAGATGTCAGGTGAAGCGTTGCTGAGAGGAATGTTCGATGCAC
GGCAGGGGGAGATGACGTTGCAGTGGCACACGGGTGATTTTGCCTTGGAT
GAGATTGCACCCAATCACAACGTCTGTCCCGCATTGGATAGCGTCGAGGC
AGACGCGAGCCACTCGAGGGAATGGGCCGAATACAACAATTCGCAGTGGG
TCCAGGAGTTGAATGCGCGGATGGCGGTGGAGCTCCCGGGGTACAGCTAT
GAGTATCTGCTTGATTGTTTGGGGACTACTGCCTGCACCGGCCGACCGTT
TCCTCCAACCTTGACCGAGACGACGTTGCAGGACGCATTTGTGCATTCGG
CGTGGATGCGGAGTTTTAAGTTTGTTTGGAATGAGGCCTATTACTCTAAA
TTGGGCATAGGACCGCTCGCGCTGGAATTGCTGGAAAATATGAGGGGGAG
GGCGAGGGCGAGAGGGAGGGAGGGGGGAAGGACGGCCCTGAAATTCGGGT
TGTTCTTGGGCCATGATACCAGCGTGTTGCCGTTGCTGGCGGCATGGAAG
GTGTGGGATGGTGAATGGCCTCCCTATGCTGCCATTTTGGTGATTGAGTT
GTATGAGGCCAAGGTGGAGGGCGAGGAAAGCGGGGAGCGACGGGGGCAGG
AGGGGGATCAGAAGGAGCACTTGTTTCGGATGCTCTACCGGGGGAAGGAG
TTGGTGATGGAAGGGTGTGAGGGAGAGGCACTGTGTCCCTTTTCGGTGCT
TGAAACCGCAACGGAAAAATGGGCCTTTGCGAGTGGTGACCCCAAGAGGC
CCTGTCAAAAAGTGGATGATTTTGGGGAGGGAAGAAGGGGGGGAGGGGAG
ACTGCTGGCCCGGCGCGCACGGCGCCTTCGGTCGCATCTGCATTCTCGTC
CTCGGTTTTGCAACGGATGCCGCGGGTGCGGACCACGGCTGGGGGGAATG
GGAAGGGGAGGGGGAAGGAGGGAGAGGAGGAGGAGGGAAAAGAAGAGCTT
ATTGTACCCATGCAGTACGTAGTTTCCAAAGCGAGCAGCAATCGCACCAA
GAGCAGCAGTAGCAGCAGCAACCACAACATTGGCAACTACAGCAGCACCA
CGAGCACTAATGCAAAGAAAGCAGAGCCAGGAGGAGAAGAAGGAGACAGA
AGGGGCGAAGGTGAAGGAGAAGGAGGAGGAGGGAAAACCAATGTCTCACT
GCTCGTTGCCATCGTTTCCAGTTTGTCTGTCGGCATGCTGTTCGGCGTCA
TCATGACCTTGTCATGGGCCGAGCGCCGGCGACGCGAGAGGGGGGAAGAT
CCGGCTTTGCATAATATCGGAGAAGGGGGTGGGATTGCGGTGATGGATCG
GATGAGAAATCGCCTGATGGGGTATATGGCGGTGTAG
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protein sequence of NO12G02990.2

>NO12G02990.2-protein ID=NO12G02990.2-protein|Name=NO12G02990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MIYLRSDDDPSYRTEMSGEALLRGMFDARQGEMTLQWHTGDFALDEIAPN
HNVCPALDSVEADASHSREWAEYNNSQWVQELNARMAVELPGYSYEYLLD
CLGTTACTGRPFPPTLTETTLQDAFVHSAWMRSFKFVWNEAYYSKLGIGP
LALELLENMRGRARARGREGGRTALKFGLFLGHDTSVLPLLAAWKVWDGE
WPPYAAILVIELYEAKVEGEESGERRGQEGDQKEHLFRMLYRGKELVMEG
CEGEALCPFSVLETATEKWAFASGDPKRPCQKVDDFGEGRRGGGETAGPA
RTAPSVASAFSSSVLQRMPRVRTTAGGNGKGRGKEGEEEEGKEELIVPMQ
YVVSKASSNRTKSSSSSSNHNIGNYSSTTSTNAKKAEPGGEEGDRRGEGE
GEGGGGKTNVSLLVAIVSSLSVGMLFGVIMTLSWAERRRRERGEDPALHN
IGEGGGIAVMDRMRNRLMGYMAV*
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mRNA from alignment at chr12:823760..826542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02990.2 ID=NO12G02990.2|Name=NO12G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=2783bp|location=Sequence derived from alignment at chr12:823760..826542- (Nannochloropsis oceanica)
ACTACAAACACGGCCACAGCATGATATATCTCCCAACCATCCTTCTCATG
TTTGCCGACAGCCTCCTTTCCCCGTCTCCAAGCCCAACAAAAATTTACGC
CCTAGCCGCCTTTCTTCCATATTCTTTTTCACGCATGACGGGAACGCAGC
AACCGACCGCATCATGACCAACGCACCGCAGCAGCCGCTGCTCGCGATGG
CAATAGCAGCAGCCTTTGTGGTTTCCGAAGCGTTTCCAACTGCGGGCGTA
AGGCACGATGCTTGGCTCACGGGCAGCTCGACTGGCTTCCGAAAGGAGAC
GCAAGACCAAGACGGCATCATATTTGACAAGCGCAAATTTGCATACTGCA
ACAGGTATGTTTGCGGACGGCTGGGTGGTTTGAATTTGAATGCTATCTTT
GAAGGCACTTTGAGTGGAGGAGAGGCTAGGTATCGTTTCTGTAACCAGAG
TGTCGGGCTCTTGGTGGCGTAGGAGAGGCTGTTTGGCCCTCCTTTCGTTA
CGTCCCACATCCAAACTCCCAACCAATTTGTCTCACCACCAATAGTCACT
GGCCAGGCCTTCATTGTGTGTACAGTCCGTCACTGTCTCTTCCTTCCCAA
CACCTTCCCCTCCTCCAAACACACAGCCCCAACAACGTCACCTTCCCCCC
ACTTGATACCTCATACTCCGACAAACATCCGGGCCTCAAGCTGCTGCAAG
TCCAAGCCATCGCACGACACGGCTCCCGCGTCCCTTATATCAAATATATG
GACTGTTGGGACGGTTACGGGTTTAAATGGGATTGTAATGTGACCGAGAT
GTCGATCCCCTCGCCCAAGGACAAGGGGAATGATGGTATGAGGATAGGGA
GGAGTGGGAGTAGCAAGGGAGGAAGTAAGGGGGAAGGCCTCGAGCCAAGC
TCACACTCATAAAATACAGCCGACCTGCGCACTTCATCTTCCGCACAATT
TACAATGCCCTTCTGCCCCCCCTCACCCTTTGCCCCTCCTACGGGGCGCC
TGTCACCTCGACTGTGCCATGCTGTCTGAATACTGCTTGCTAACGCATAC
CCAGTCACTCACCCACATCGCATCTGTACGCCCACAGCTCGATCCGCCCC
CTTCATCTTCCGCAAGATCTACGACGGCTCCCCCACCATCTTAGGGGGTA
CATGCCATCTCGGCCAGCTCGTTGTTGAGGGCTACGACCAAGAAGCCGCC
AATGGCGAGGCCCTCGGCAAAGCGTACATAGGGCATGGCCCGCTCAATCT
CTTCCACACACCAAACTTGGGCGCAGTCACGGGCGAAATGATTTACCTGC
GTTCCGACGACGACCCGTCGTACCGCACCGAGATGTCAGGTGAAGCGTTG
CTGAGAGGAATGTTCGATGCACGGCAGGGGGAGATGACGTTGCAGTGGCA
CACGGGTGATTTTGCCTTGGATGAGATTGCACCCAATCACAACGTCTGTC
CCGCATTGGATAGCGTCGAGGCAGACGCGAGCCACTCGAGGGAATGGGCC
GAATACAACAATTCGCAGTGGGTCCAGGAGTTGAATGCGCGGATGGCGGT
GGAGCTCCCGGGGTACAGCTATGAGTATCTGCTTGATTGTTTGGGGACTA
CTGCCTGCACCGGCCGACCGTTTCCTCCAACCTTGACCGAGACGACGTTG
CAGGACGCATTTGTGCATTCGGCGTGGATGCGGAGTTTTAAGTTTGTTTG
GAATGAGGCCTATTACTCTAAATTGGGCATAGGACCGCTCGCGCTGGAAT
TGCTGGAAAATATGAGGGGGAGGGCGAGGGCGAGAGGGAGGGAGGGGGGA
AGGACGGCCCTGAAATTCGGGTTGTTCTTGGGCCATGATACCAGCGTGTT
GCCGTTGCTGGCGGCATGGAAGGTGTGGGATGGTGAATGGCCTCCCTATG
CTGCCATTTTGGTGATTGAGTTGTATGAGGCCAAGGTGGAGGGCGAGGAA
AGCGGGGAGCGACGGGGGCAGGAGGGGGATCAGAAGGAGCACTTGTTTCG
GATGCTCTACCGGGGGAAGGAGTTGGTGATGGAAGGGTGTGAGGGAGAGG
CACTGTGTCCCTTTTCGGTGCTTGAAACCGCAACGGAAAAATGGGCCTTT
GCGAGTGGTGACCCCAAGAGGCCCTGTCAAAAAGTGGATGATTTTGGGGA
GGGAAGAAGGGGGGGAGGGGAGACTGCTGGCCCGGCGCGCACGGTATCAC
CGGGGAAGAGGAATGGGCCGAAGAAGGGGGGGGGGAAGATGGGCATGCGC
GTGTGGGGACGCCCAAGGCGCCTTCGGTCGCATCTGCATTCTCGTCCTCG
GTTTTGCAACGGATGCCGCGGGTGCGGACCACGGCTGGGGGGAATGGGAA
GGGGAGGGGGAAGGAGGGAGAGGAGGAGGAGGGAAAAGAAGAGCTTATTG
TACCCATGCAGTACGTAGTTTCCAAAGCGAGCAGCAATCGCACCAAGAGC
AGCAGTAGCAGCAGCAACCACAACATTGGCAACTACAGCAGCACCACGAG
CACTAATGCAAAGAAAGCAGAGCCAGGAGGAGAAGAAGGAGACAGAAGGG
GCGAAGGTGAAGGAGAAGGAGGAGGAGGGAAAACCAATGTCTCACTGCTC
GTTGCCATCGTTTCCAGTTTGTCTGTCGGCATGCTGTTCGGCGTCATCAT
GACCTTGTCATGGGCCGAGCGCCGGCGACGCGAGAGGGGGGAAGATCCGG
CTTTGCATAATATCGGAGAAGGGGGTGGGATTGCGGTGATGGATCGGATG
AGAAATCGCCTGATGGGGTATATGGCGGTGTAG
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Coding sequence (CDS) from alignment at chr12:823760..826542-

>NO12G02990.2 ID=NO12G02990.2|Name=NO12G02990.2|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr12:823760..826542- (Nannochloropsis oceanica)
ATGATTTACCTGCGTTCCGACGACGACCCGTCGTACCGCACCGAGATGTC
AGGTGAAGCGTTGCTGAGAGGAATGTTCGATGCACGGCAGGGGGAGATGA
CGTTGCAGTGGCACACGGGTGATTTTGCCTTGGATGAGATTGCACCCAAT
CACAACGTCTGTCCCGCATTGGATAGCGTCGAGGCAGACGCGAGCCACTC
GAGGGAATGGGCCGAATACAACAATTCGCAGTGGGTCCAGGAGTTGAATG
CGCGGATGGCGGTGGAGCTCCCGGGGTACAGCTATGAGTATCTGCTTGAT
TGTTTGGGGACTACTGCCTGCACCGGCCGACCGTTTCCTCCAACCTTGAC
CGAGACGACGTTGCAGGACGCATTTGTGCATTCGGCGTGGATGCGGAGTT
TTAAGTTTGTTTGGAATGAGGCCTATTACTCTAAATTGGGCATAGGACCG
CTCGCGCTGGAATTGCTGGAAAATATGAGGGGGAGGGCGAGGGCGAGAGG
GAGGGAGGGGGGAAGGACGGCCCTGAAATTCGGGTTGTTCTTGGGCCATG
ATACCAGCGTGTTGCCGTTGCTGGCGGCATGGAAGGTGTGGGATGGTGAA
TGGCCTCCCTATGCTGCCATTTTGGTGATTGAGTTGTATGAGGCCAAGGT
GGAGGGCGAGGAAAGCGGGGAGCGACGGGGGCAGGAGGGGGATCAGAAGG
AGCACTTGTTTCGGATGCTCTACCGGGGGAAGGAGTTGGTGATGGAAGGG
TGTGAGGGAGAGGCACTGTGTCCCTTTTCGGTGCTTGAAACCGCAACGGA
AAAATGGGCCTTTGCGAGTGGTGACCCCAAGAGGCCCTGTCAAAAAGTGG
ATGATTTTGGGGAGGGAAGAAGGGGGGGAGGGGAGACTGCTGGCCCGGCG
CGCACGGCGCCTTCGGTCGCATCTGCATTCTCGTCCTCGGTTTTGCAACG
GATGCCGCGGGTGCGGACCACGGCTGGGGGGAATGGGAAGGGGAGGGGGA
AGGAGGGAGAGGAGGAGGAGGGAAAAGAAGAGCTTATTGTACCCATGCAG
TACGTAGTTTCCAAAGCGAGCAGCAATCGCACCAAGAGCAGCAGTAGCAG
CAGCAACCACAACATTGGCAACTACAGCAGCACCACGAGCACTAATGCAA
AGAAAGCAGAGCCAGGAGGAGAAGAAGGAGACAGAAGGGGCGAAGGTGAA
GGAGAAGGAGGAGGAGGGAAAACCAATGTCTCACTGCTCGTTGCCATCGT
TTCCAGTTTGTCTGTCGGCATGCTGTTCGGCGTCATCATGACCTTGTCAT
GGGCCGAGCGCCGGCGACGCGAGAGGGGGGAAGATCCGGCTTTGCATAAT
ATCGGAGAAGGGGGTGGGATTGCGGTGATGGATCGGATGAGAAATCGCCT
GATGGGGTATATGGCGGTGTAG
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Synonyms
Publications