NO12G02980.1, NO12G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02980.1
Unique NameNO12G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length751
Alignment locationchr12:821091..822889 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:821091..822889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02980.1 vs.
Match: EWM25735.1 (hypothetical protein Naga_100087g18 [Nannochloropsis gaditana])

HSP 1 Score: 274.2 bits (700), Expect = 3.300e-70
Identity = 144/178 (80.90%), Postives = 155/178 (87.08%), Query Frame = 0 
Query:    1 MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLKDSSIRGVRVGATWNLLSEDGVLVTSRHEKLTPILLTPDPGEDPQLGKGRGYTNFYRPSSDLEVFMLTCDFVIREVVREEGVGAVMMVMKGGEEGGM--GAVGGGEGGGDNDDGGVDG 177
            MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLK+ ++RG+RVGATWNLLSE+GVL+TSRHEKLTPILLTPDPG+DPQLGKGRGYTNFYRP  DLE F LTCDFV+REVVRE+  G +    KGG EGGM  GA  GG GG    +G VDG
Sbjct:    1 MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLKNPALRGIRVGATWNLLSEEGVLITSRHEKLTPILLTPDPGDDPQLGKGRGYTNFYRPPPDLETFTLTCDFVVREVVREDAGGGLGPGNKGG-EGGMEGGARRGGGGGALMMEGSVDG 177
The following BLAST results are available for this feature:
BLAST of NO12G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25735.13.300e-7080.90hypothetical protein Naga_100087g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02980NO12G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02980.1NO12G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02980.1.cds1NO12G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02980.1.cds2NO12G02980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02980.1.cds3NO12G02980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02980.1 ID=NO12G02980.1|Name=NO12G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=751bp
TGTTCTGCTGCTTTTTACACCACAACAGGAACGCTCTGACATATATTGTG
AAGACTAGGGACAAAAGATTGGAGAGCCTCGACGCAAAGCAAGCAAAGCC
AGGCAGCAAGAAGAGAGGATGATCCGACTTCGCGTCAAGTCACTGTCGGA
GCTACGAGAGAAGCATCAAGCGGGCGATTACGTCTCGGGCACTGTTTTTA
GCACACCAGAAGGCAGCTTCACTATCAGTCTGTATCCTACAGGCGACAAG
CTGTCCAACCCCGGCTTCATCGGGGTTTACCTCACCTGTCTATCCCTCAA
GGATTCCTCTATCCGCGGCGTGCGGGTGGGGGCCACGTGGAACCTCCTGT
CCGAGGACGGAGTGCTGGTGACCTCGCGCCATGAGAAACTGACTCCCATC
TTGCTGACCCCAGACCCGGGGGAGGACCCTCAATTGGGGAAGGGAAGGGG
ATACACGAATTTTTATCGGCCTTCCTCAGATCTGGAGGTATTCATGTTGA
CCTGCGACTTTGTGATACGAGAGGTGGTGAGGGAGGAGGGGGTTGGGGCG
GTGATGATGGTGATGAAGGGAGGAGAGGAGGGAGGGATGGGGGCCGTGGG
AGGGGGGGAGGGGGGGGGGGACAATGATGATGGAGGGGTCGATGGAGGGG
CTGTTGAGTACTATAGCAGCAGTAGTATTAGCAGCAGCAGCAGCAGCAGC
AGCAGTACCAGCAGCAACAGCAACAGCATCAGAATGATGACATGTACATA
G
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protein sequence of NO12G02980.1

>NO12G02980.1-protein ID=NO12G02980.1-protein|Name=NO12G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGF
IGVYLTCLSLKDSSIRGVRVGATWNLLSEDGVLVTSRHEKLTPILLTPDP
GEDPQLGKGRGYTNFYRPSSDLEVFMLTCDFVIREVVREEGVGAVMMVMK
GGEEGGMGAVGGGEGGGDNDDGGVDGGAVEYYSSSSISSSSSSSSSTSSN
SNSIRMMTCT*
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mRNA from alignment at chr12:821091..822889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02980.1 ID=NO12G02980.1|Name=NO12G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at chr12:821091..822889+ (Nannochloropsis oceanica)
TGTTCTGCTGCTTTTTACACCACAACAGGAACGCTCTGACATATATTGTG
AAGACTAGGGACAAAAGATTGGAGAGCCTCGACGCAAAGGTAAGGGTGGC
TGCATGGGTGGGGCAGAAGCCAGGGGGAAGGATCGCTTTTGCTGATGATC
ACGACGGCATTGAGGAGAAGAGCACTGCGGTAGTCTGCACTATATGATAC
CAGCTTACAAACATCGTCAATTTAAGAATAAGGAGAAGAGAGCGCTGAGG
AGGGGATGGATGCCTTAAAGGGGTTGGGCTGGGTCTGCAAGGGGTGGATT
GGAGCGGCCGCGTGGTGAATAGCAAGCGGCTTCTCTTGTGGAAGTTCCCT
TGTTTTTGATCGCAATGATGCACACACATACATACATATACACTCCCCCT
TACTTTCCATTTTTCCCATTCCTTACTGATAATGGACAGCAAGCAAAGCC
AGGCAGCAAGAAGAGAGGATGATCCGACTTCGCGTCAAGTCACTGTCGGA
GCTACGAGAGAAGCATCAAGCGGGCGATTACGTCTCGGGCACTGTTTTTA
GCACACCAGAAGGCAGCTTCACTATCAGGTATAAAGGCCCTGGCGATAGA
CAGATCCCTCCCTTCCTTTCTTCCTCTTTTCCTTCCTTGCCAAGGCAAAT
TTGTCTCACTCAACCCTCCCTCCCTCCCTCCCTCCCTCCTCTAGTCTGTA
TCCTACAGGCGACAAGCTGTCCAACCCCGGCTTCATCGGGGTTTACCTCA
CCTGTCTATCCCTCAAGGATTCCTCTATCCGCGGCGTGCGGGTGGGGGCC
ACGTGGAACCTCCTGTCCGAGGACGGAGTGCTGGTGACCTCGCGCCATGA
GAAACTGACTCCCATCTTGCTGACCCCAGACCCGGGGGAGGACCCTCAAT
TGGGGAAGGGAAGGGGATACACGAATTTTTATCGGCCTTCCTCAGATCTG
GAGGTATTCATGTTGACCTGCGACTTTGTGATACGAGAGGTGGTGAGGGA
GGAGGGGGTTGGGGCGGTGATGATGGTGATGAAGGGAGGAGAGGAGGGAG
GGATGGGGGCCGTGGGAGGGGGGGAGGGGGGGGGGGACAATGATGATGGA
GGGGTCGATGGAGGGGCTGTTGAGTACTGTAAGACGAGTGCACGAGAAGG
AGATGGAGAGGAGCCGGAGAGCGAGGGTGTTAGCGGTGGAGGAGCTAGTG
GAGTTGAGTCAAGAGGATCTGTTGAAGTTGCAGGAAAATCTGGCGTGTGC
CTTGACAAAGAAATGCGAGATCGATAGGTATTGCTCGATTTGCTTGGAGA
GGCAGAAAGATCACGTGTGCGTCCCCTGTGGGCATCGGTACTGCGGTTCG
TGCATAGCCCAGGTGGAGCGCTGTGCGGAGTGTAGGGAGAAAATCACACA
GAAGCTGAAGTGTTTCTAGGGCGAGGAGGGGAGTTTTGGAGGGAAGGAGC
GAGGGAAGGAGGGTTGTGCACATAAATTTACATCCAGGAAGAGACGGGAG
GAGTGAGGCATGGGGAGAGACACAGGCAGGCAGAAAAGGAAAGGATTACT
TGTGAATACAGTGCTCGCCCTCCTTATCCTCTATTCTGTCTTCGATCATT
TTTCCTGGCACGTACAAAGGATGCGAGCGTTGAGAGAGATGGAGAGGGAT
GTGGAAAGACACGGACACGCACGAGTTGTTTCAGAACAACCAATCAGTCG
TCGTAAGCAGATAGCAGCAGTAGTATTAGCAGCAGCAGCAGCAGCAGCAG
CAGTACCAGCAGCAACAGCAACAGCATCAGAATGATGACATGTACATAG
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Coding sequence (CDS) from alignment at chr12:821091..822889+

>NO12G02980.1 ID=NO12G02980.1|Name=NO12G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr12:821091..822889+ (Nannochloropsis oceanica)
ATGATCCGACTTCGCGTCAAGTCACTGTCGGAGCTACGAGAGAAGCATCA
AGCGGGCGATTACGTCTCGGGCACTGTTTTTAGCACACCAGAAGGCAGCT
TCACTATCAGTCTGTATCCTACAGGCGACAAGCTGTCCAACCCCGGCTTC
ATCGGGGTTTACCTCACCTGTCTATCCCTCAAGGATTCCTCTATCCGCGG
CGTGCGGGTGGGGGCCACGTGGAACCTCCTGTCCGAGGACGGAGTGCTGG
TGACCTCGCGCCATGAGAAACTGACTCCCATCTTGCTGACCCCAGACCCG
GGGGAGGACCCTCAATTGGGGAAGGGAAGGGGATACACGAATTTTTATCG
GCCTTCCTCAGATCTGGAGGTATTCATGTTGACCTGCGACTTTGTGATAC
GAGAGGTGGTGAGGGAGGAGGGGGTTGGGGCGGTGATGATGGTGATGAAG
GGAGGAGAGGAGGGAGGGATGGGGGCCGTGGGAGGGGGGGAGGGGGGGGG
GGACAATGATGATGGAGGGGTCGATGGAGGGGCTGTTGAGTACTATAGCA
GCAGTAGTATTAGCAGCAGCAGCAGCAGCAGCAGCAGTACCAGCAGCAAC
AGCAACAGCATCAGAATGATGACATGTACATAG
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Synonyms
Publications