NO12G02960.1, NO12G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02960.1
Unique NameNO12G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1583
Alignment locationchr12:816524..818810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:816524..818810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02960.1 vs.
Match: EWM25727.1 (d-aminoacid aminotransferase-like plp-dependent enzyme-like protein [Nannochloropsis gaditana]; EWM25728.1 d-aminoacid aminotransferase-like plp-dependent enzyme-like protein [Nannochloropsis gaditana])

HSP 1 Score: 405.2 bits (1040), Expect = 2.100e-109
Identity = 216/360 (60.00%), Postives = 263/360 (73.06%), Query Frame = 0 
Query:    7 KTNFLRPSADLALLLLVILVLLPITTTAFSGSTLTSLSPQNPPPPKGGMSVGITPREFLMERPPGPYTCLRARDGALLGFDFHMQRLMHAIRASGGSGSRVQEKEMRIQVLDVIAGALEDAALLRRVEESGEQKPFKTPI--DAFVTVHAAISS---SSLSSGLVLNAHAVTMPYAIMPPAITLEVRGDGRQHPEIKHSRWVRDRQELERFRSGPGGEVALSRPVGSGRD----------REVLEGLVSNIFAVKGGKLVTAQDGVLPGHMRSMTLEAARSLGVPVGEVNDCLRIEEIGEWEEAFLTGSGRVLVPIGRVEGTSVGLSGVDLPMAPGPMTNLLRARLLFDMNEGWEGMEEL 352
            +  F RP    + L  ++  + PI  T+FS  TLTSL+PQNPPPP  G+SV  TPR+FLMERPPGPYTCLRARD +LLGFDFH QRL+H I +S G  S V   E+R +VL+VI  AL +A+     E+  E     T    D FVTVH   SS    S +SG+ L+AHAV+MPYA+MPP +TLE+RG+GR+ P++KHS+W+RDRQ LERFR GPGGEVALSR + +GR           REVLEGLVSNIF VKGGKL+TA DG+LPGHMR+M L AA +LGVPVG+  + + +E+I EWEEAFLTGSGRVLVPIGRVEGTSVGL  VDL  APGP+TNL+RARLL+DM +GWE +  L
Sbjct:    9 RPTFRRPILP-SYLYFLLFSMQPIIATSFSAGTLTSLTPQNPPPPASGVSVRKTPRQFLMERPPGPYTCLRARDESLLGFDFHFQRLLHGIESSVGCMSPVNAGELRKRVLNVIEEALTEASQQHPSEDGKEGSTGSTEKLRDFFVTVHIDESSIVLPSSTSGVALSAHAVSMPYAVMPPPVTLEIRGEGRRSPDVKHSQWLRDRQGLERFRVGPGGEVALSRSLPAGRGEEEGKAGKAGREVLEGLVSNIFVVKGGKLLTASDGILPGHMRTMALRAAEALGVPVGDPEEKILLEDILEWEEAFLTGSGRVLVPIGRVEGTSVGLPPVDLAAAPGPITNLVRARLLYDMEDGWENLRSL 367
The following BLAST results are available for this feature:
BLAST of NO12G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25727.12.100e-10960.00d-aminoacid aminotransferase-like plp-dependent en... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02960NO12G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02960.1NO12G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02960.1.cds1NO12G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02960.1 ID=NO12G02960.1|Name=NO12G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
CATCATGACCACGCACCCCCCTTACCCCACTTACCCCACGCCCACAACGT
TAGAACCATAGTTTATTTCCCATTGCACGGCCACCACCTCCACCTCACAC
ACCTTTCAAATTGCCAGTCCAGAACGACCACACAACTTTCGGTGACTGCG
AGAAACCGAATTGGAACACTCATCCCAAGCGCCAGCGGCAACTTCAGAGC
GATGCTGCTTCAACAAGTCAAGACCAACTTTCTACGGCCATCAGCAGACC
TCGCCCTCCTCCTCCTCGTTATCCTTGTTCTCTTGCCTATCACCACCACA
GCGTTCTCTGGTAGCACCTTGACAAGCCTGTCGCCGCAAAACCCGCCTCC
GCCCAAGGGGGGGATGAGCGTTGGGATCACCCCACGGGAGTTTTTGATGG
AACGCCCTCCGGGTCCTTACACTTGCCTTCGAGCCCGCGACGGTGCATTG
TTAGGTTTTGACTTTCACATGCAGCGCTTGATGCACGCGATTCGAGCCTC
GGGGGGCAGTGGAAGCAGGGTGCAAGAGAAGGAAATGCGCATCCAAGTGC
TTGACGTGATTGCCGGGGCCCTGGAAGACGCAGCCCTCCTTCGGAGAGTA
GAGGAATCTGGCGAACAGAAGCCCTTTAAAACCCCCATCGACGCCTTTGT
TACTGTCCACGCCGCGATCTCCTCCTCCTCTTTATCGTCGGGCCTGGTCT
TAAACGCCCACGCCGTGACCATGCCCTATGCAATCATGCCTCCAGCCATA
ACCTTGGAAGTCCGAGGCGATGGGCGGCAACACCCAGAAATCAAACACTC
CAGATGGGTACGTGACAGACAAGAACTCGAGCGGTTTCGCTCGGGTCCTG
GGGGGGAGGTAGCTTTGTCTCGCCCTGTAGGATCTGGGAGGGATAGAGAG
GTCTTGGAGGGGTTGGTGAGCAATATTTTTGCAGTCAAGGGAGGGAAGCT
CGTGACGGCCCAAGATGGTGTGTTGCCGGGGCATATGCGATCAATGACAC
TAGAAGCCGCGCGATCTTTAGGTGTGCCGGTGGGGGAAGTGAATGACTGT
TTGAGAATTGAGGAAATCGGGGAGTGGGAGGAGGCATTTTTGACAGGCTC
GGGACGGGTGCTAGTTCCGATTGGAAGGGTGGAGGGAACGAGTGTGGGGT
TGTCGGGAGTAGATCTGCCGATGGCACCAGGGCCGATGACCAACTTATTG
AGAGCACGGTTGCTATTTGACATGAATGAGGGATGGGAAGGCATGGAGGA
GCTACGGAGGATGTGAGGGAGGAACAACAGCAGCCTGGAGGGAAGAAAAG
TAGTGAGCGATACAGAAATTAGATGATATACAAATCGGATGTTTCGCAGA
ATTACCCATTACCAGCTGCGAGACAGTTTGGGTGACAAATTCAAAAATGC
AGATGACTGAGAATTGAATGTAGATGACATGTGTGTGGTAGTAGGAGAGG
GAATATAAGGTAAGAGTCGAGAGGTAGAAATTTTGACAGGGGGTAATATG
ATTGATTGGTATGTAGGAGAAGAAGGCGAAGCGATGCAAAGGCACACATA
GATATGCAAACAAGATGACTTTTTGCAAGCCTT
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protein sequence of NO12G02960.1

>NO12G02960.1-protein ID=NO12G02960.1-protein|Name=NO12G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MLLQQVKTNFLRPSADLALLLLVILVLLPITTTAFSGSTLTSLSPQNPPP
PKGGMSVGITPREFLMERPPGPYTCLRARDGALLGFDFHMQRLMHAIRAS
GGSGSRVQEKEMRIQVLDVIAGALEDAALLRRVEESGEQKPFKTPIDAFV
TVHAAISSSSLSSGLVLNAHAVTMPYAIMPPAITLEVRGDGRQHPEIKHS
RWVRDRQELERFRSGPGGEVALSRPVGSGRDREVLEGLVSNIFAVKGGKL
VTAQDGVLPGHMRSMTLEAARSLGVPVGEVNDCLRIEEIGEWEEAFLTGS
GRVLVPIGRVEGTSVGLSGVDLPMAPGPMTNLLRARLLFDMNEGWEGMEE
LRRM*
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mRNA from alignment at chr12:816524..818810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02960.1 ID=NO12G02960.1|Name=NO12G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at chr12:816524..818810+ (Nannochloropsis oceanica)
CATCATGACCACGCACCCCCCTTACCCCACTTACCCCACGCCCACAACGT
TAGAACCATAGTTTATTTCCCATTGCACGGCCACCACCTCCACCTCACAC
ACCTTTCAAATTGCCAGTCCAGAACGACCACACAACTTTCGGTGACTGCG
AGAAACCGAATTGGAACACTCATCCCAAGCGCCAGCGGCAACTTCAGAGC
GATGCTGCTTCAACAAGTCAAGACCAACTTTCTACGGCCATCAGCAGACC
TCGCCCTCCTCCTCCTCGTTATCCTTGTTCTCTTGCCTATCACCACCACA
GCGTTCTCTGGTAGCACCTTGACAAGCCTGTCGCCGCAAAACCCGCCTCC
GCCCAAGGGGGGGATGAGCGTTGGGATCACCCCACGGGAGTTTTTGATGG
AACGCCCTCCGGGTCCTTACACTTGCCTTCGAGCCCGCGACGGTGCATTG
TTAGGTTTTGACTTTCACATGCAGCGCTTGATGCACGCGATTCGAGCCTC
GGGGGGCAGTGGAAGCAGGGTGCAAGAGAAGGAAATGCGCATCCAAGTGC
TTGACGTGATTGCCGGGGCCCTGGAAGACGCAGCCCTCCTTCGGAGAGTA
GAGGAATCTGGCGAACAGAAGCCCTTTAAAACCCCCATCGACGCCTTTGT
TACTGTCCACGCCGCGATCTCCTCCTCCTCTTTATCGTCGGGCCTGGTCT
TAAACGCCCACGCCGTGACCATGCCCTATGCAATCATGCCTCCAGCCATA
ACCTTGGAAGTCCGAGGCGATGGGCGGCAACACCCAGAAATCAAACACTC
CAGATGGGTACGTGACAGACAAGAACTCGAGCGGTTTCGCTCGGGTCCTG
GGGGGGAGGTAGCTTTGTCTCGCCCTGTAGGATCTGGGAGGGATAGAGAG
GTCTTGGAGGGGTTGGTGAGCAATATTTTTGCAGTCAAGGGAGGGAAGCT
CGTGACGGCCCAAGATGGTGTGTTGCCGGGGCATATGCGATCAATGACAC
TAGAAGCCGCGCGATCTTTAGGTGTGCCGGTGGGGGAAGTGAATGACTGT
TTGAGAATTGAGGAAATCGGGGAGTGGGAGGAGGCATTTTTGACAGGCTC
GGGACGGGTGCTAGTTCCGATTGGAAGGGTGGAGGGAACGAGTGTGGGGT
TGTCGGGAGTAGATCTGCCGATGGCACCAGGGCCGATGACCAACTTATTG
AGAGCACGGTTGCTATTTGACATGAATGAGGGATGGGAAGGCATGGAGGA
GCTACGGAGGATGTGAGGGAGGAACAACAGCAGCCTGGAGGGAAGAAAAG
TAGTGAGCGGTAAGTTTTTGGTCGTCGGTGAAAGAGCGGGAAGGATAGTT
CTGTGTATTTTAATTTGTACACCGTATCTCAAATCTCTCCTGGCATGTGT
GTCTGTCCGTTTACCATTGTGTGCGCACTCTTTCCTTTGTCTCCTGTCTC
TTCCCCTCCCTCCCCGCCTCCCCTCCTCCCTCAATCGCCGCCTTATGACA
ATTAAAAGGAGTTCCTTCATCCTACGGACATTCACTTTTACGAAAAGGTC
GGCAGATTCATTTTTTATAACAACACTCTTTCCATCCCTCTTGCCTTTGA
ACAATCATGGCATCACCGGACTTCCAAGGGAGTGCACATCTCTTTCCGTT
GATTGGACGATTTCTTCTTGTACATATACATACACCTGCCGCTGTGTGTA
TGTGTGTGTGCTTCTGTGTCGCTGAGATTGTATGTCTGCATTTCTCACCG
CCCCTCTCCCTAGCTCTAAATGTATGTCGCTGCTTCTGTCGGTGTGAGTA
AGGAAGTTGGTAATTAATTGTGTCATGCCAGGTCCGTCTTCGTAGTCCCT
CTCCATCTCTCATTCTCACGAGTCGTACGTTTTATCAGTCCCTCCTGTAT
ATTCTTTCTATCGTTAGAAAACCTCAAGGTTTATCCTCTTCTCACATTTT
CAATCACTGATCCTCTTTCCTTCTTCCCCTCCGCGCTTGGTTTCCTCCCG
CCTTCGGCACAAGATACAGAAATTAGATGATATACAAATCGGATGTTTCG
CAGAATTACCCATTACCAGCTGCGAGACAGTTTGGGTGACAAATTCAAAA
ATGCAGATGACTGAGAATTGAATGTAGATGACATGTGTGTGGTAGTAGGA
GAGGGAATATAAGGTAAGAGTCGAGAGGTAGAAATTTTGACAGGGGGTAA
TATGATTGATTGGTATGTAGGAGAAGAAGGCGAAGCGATGCAAAGGCACA
CATAGATATGCAAACAAGATGACTTTTTGCAAGCCTT
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Coding sequence (CDS) from alignment at chr12:816524..818810+

>NO12G02960.1 ID=NO12G02960.1|Name=NO12G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr12:816524..818810+ (Nannochloropsis oceanica)
ATGCTGCTTCAACAAGTCAAGACCAACTTTCTACGGCCATCAGCAGACCT
CGCCCTCCTCCTCCTCGTTATCCTTGTTCTCTTGCCTATCACCACCACAG
CGTTCTCTGGTAGCACCTTGACAAGCCTGTCGCCGCAAAACCCGCCTCCG
CCCAAGGGGGGGATGAGCGTTGGGATCACCCCACGGGAGTTTTTGATGGA
ACGCCCTCCGGGTCCTTACACTTGCCTTCGAGCCCGCGACGGTGCATTGT
TAGGTTTTGACTTTCACATGCAGCGCTTGATGCACGCGATTCGAGCCTCG
GGGGGCAGTGGAAGCAGGGTGCAAGAGAAGGAAATGCGCATCCAAGTGCT
TGACGTGATTGCCGGGGCCCTGGAAGACGCAGCCCTCCTTCGGAGAGTAG
AGGAATCTGGCGAACAGAAGCCCTTTAAAACCCCCATCGACGCCTTTGTT
ACTGTCCACGCCGCGATCTCCTCCTCCTCTTTATCGTCGGGCCTGGTCTT
AAACGCCCACGCCGTGACCATGCCCTATGCAATCATGCCTCCAGCCATAA
CCTTGGAAGTCCGAGGCGATGGGCGGCAACACCCAGAAATCAAACACTCC
AGATGGGTACGTGACAGACAAGAACTCGAGCGGTTTCGCTCGGGTCCTGG
GGGGGAGGTAGCTTTGTCTCGCCCTGTAGGATCTGGGAGGGATAGAGAGG
TCTTGGAGGGGTTGGTGAGCAATATTTTTGCAGTCAAGGGAGGGAAGCTC
GTGACGGCCCAAGATGGTGTGTTGCCGGGGCATATGCGATCAATGACACT
AGAAGCCGCGCGATCTTTAGGTGTGCCGGTGGGGGAAGTGAATGACTGTT
TGAGAATTGAGGAAATCGGGGAGTGGGAGGAGGCATTTTTGACAGGCTCG
GGACGGGTGCTAGTTCCGATTGGAAGGGTGGAGGGAACGAGTGTGGGGTT
GTCGGGAGTAGATCTGCCGATGGCACCAGGGCCGATGACCAACTTATTGA
GAGCACGGTTGCTATTTGACATGAATGAGGGATGGGAAGGCATGGAGGAG
CTACGGAGGATGTGA
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Synonyms
Publications