NO12G02940.1, NO12G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02940.1
Unique NameNO12G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr12:812581..813948 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:812581..813948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02940.1 vs.
Match: XP_005854608.1 (tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526]; EKU21752.1 tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.6 bits (571), Expect = 6.400e-55
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 0 
Query:  271 PKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWLKVQRSPHWSVVPEE 415
            PKDLLLRDLTRCT+ LL+PLHFLR ENL DCKLLCGPV GPVYL+ C GCTLY+ASRQLRIH TYDTTLYVH  +GP+IEDCD L F PWAL YPG EEQ+ EAG         GG  NAW+EVKDFKWL+ Q SPHW V+P+E
Sbjct:   14 PKDLLLRDLTRCTVSLLSPLHFLRCENLRDCKLLCGPVAGPVYLQDCIGCTLYVASRQLRIHRTYDTTLYVHTVAGPIIEDCDRLCFGPWALAYPGREEQVEEAGL--------GGTENAWREVKDFKWLRAQASPHWQVLPQE 149
The following BLAST results are available for this feature:
BLAST of NO12G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854608.16.400e-5572.22tubulin-specific chaperone c, partial [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02940NO12G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02940.1NO12G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02940.1.cds1NO12G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02940.1 ID=NO12G02940.1|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGGAACCTCCCATCAAGACTCCACTGCCGCCTCCTACCCCGGAGCCATC
GACACGCCATACTGAAATGCAAGCCCGCTTTCGAGCCCAACAAGAAGCAC
GGATGCAATCCCGAAAGGACAGCAGGGCCAAGGTTCAGCTCGGCAAAGAC
CCTGCGGAATCTGTTGGCGTCTTTTGGACGGAATTGCGGAGGGCACACGA
GGACGTGACGAGTAGGCTGGACAACTTGGCCTTGACCGATACGAGCAGCA
CCAAAATTAGCTGCAGCAGCACCAAAATTAGCTGCAGCAGCAGCAACAAT
AGCACTGTGGAAGAATCTCTTACTTATTTGAGTGGCAAGGTCCAAGCCCT
CGATAAGCAGATCGCCGACGCCGCGTTGTTCTTGCCTCCGTATGACGTCC
GCCGGGCCCAGGAAGAAGCTAGTGCCTTACGGAGCAAACTGGAGAAAGTG
CGCGCAGCCTTCGCACCACGCAAAAGATTTTCGTTTGCTTCTCGGCGGCG
TACAACAGCAGCAGCAACAGCAACAGCAGCAGAAGAGGAAGGAGCGGTGA
ATGGAGGCTCCGACGAACTGCGCGGAGAGAGCACCAACAGCAGCACCAAA
CAAACCTGGCGTCCGACGCCGTCCGTAGCACCAACGTCATCGAAAGCCTC
TCCAAGCACCACTGCCACTACCAGCGACGAATCGTCTGGTCTGACAGCCA
TGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCTC
CTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAT
CATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACCA
TCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGAC
TGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAATG
CCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGTA
CCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGAA
GATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGATG
GGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGGG
AGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGTTG
AAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGGT
GATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGAC
AAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GGAAAGCTGCGATTGTAA
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protein sequence of NO12G02940.1

>NO12G02940.1-protein ID=NO12G02940.1-protein|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MEPPIKTPLPPPTPEPSTRHTEMQARFRAQQEARMQSRKDSRAKVQLGKD
PAESVGVFWTELRRAHEDVTSRLDNLALTDTSSTKISCSSTKISCSSSNN
STVEESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKV
RAAFAPRKRFSFASRRRTTAAATATAAEEEGAVNGGSDELRGESTNSSTK
QTWRPTPSVAPTSSKASPSTTATTSDESSGLTAMEGFSSHSDATLNLNTL
LSTTTSRSSSNSSSSSIISHPKDLLLRDLTRCTIHLLAPLHFLRLENLID
CKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIE
DCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL
KVQRSPHWSVVPEEERVMEEVVGGGSSDGEGERQREEEEEEEEEEEEEEE
GKLRL*
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mRNA from alignment at chr12:812581..813948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02940.1 ID=NO12G02940.1|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp|location=Sequence derived from alignment at chr12:812581..813948- (Nannochloropsis oceanica)
ATGGAACCTCCCATCAAGACTCCACTGCCGCCTCCTACCCCGGAGCCATC
GACACGCCATACTGAAATGCAAGCCCGCTTTCGAGCCCAACAAGAAGCAC
GGATGCAATCCCGAAAGGACAGCAGGGCCAAGGTTCAGCTCGGCAAAGAC
CCTGCGGAATCTGTTGGCGTCTTTTGGACGGAATTGCGGAGGGCACACGA
GGACGTGACGAGTAGGCTGGACAACTTGGCCTTGACCGATACGAGCAGCA
CCAAAATTAGCTGCAGCAGCACCAAAATTAGCTGCAGCAGCAGCAACAAT
AGCACTGTGGAAGAATCTCTTACTTATTTGAGTGGCAAGGTCCAAGCCCT
CGATAAGCAGATCGCCGACGCCGCGTTGTTCTTGCCTCCGTATGACGTCC
GCCGGGCCCAGGAAGAAGCTAGTGCCTTACGGAGCAAACTGGAGAAAGTG
CGCGCAGCCTTCGCACCACGCAAAAGATTTTCGTTTGCTTCTCGGCGGCG
TACAACAGCAGCAGCAACAGCAACAGCAGCAGAAGAGGAAGGAGCGGTGA
ATGGAGGCTCCGACGAACTGCGCGGAGAGAGCACCAACAGCAGCACCAAA
CAAACCTGGCGTCCGACGCCGTCCGTAGCACCAACGTCATCGAAAGCCTC
TCCAAGCACCACTGCCACTACCAGCGACGAATCGTCTGGTCTGACAGCCA
TGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCTC
CTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAT
CATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACCA
TCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGAC
TGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAATG
CCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGTA
CCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGAA
GATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGATG
GGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGGG
AGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGTTG
AAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGGT
GATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGAC
AAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GGAAAGCTGCGATTGTAA
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Coding sequence (CDS) from alignment at chr12:812581..813948-

>NO12G02940.1 ID=NO12G02940.1|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr12:812581..813948- (Nannochloropsis oceanica)
ATGGAACCTCCCATCAAGACTCCACTGCCGCCTCCTACCCCGGAGCCATC
GACACGCCATACTGAAATGCAAGCCCGCTTTCGAGCCCAACAAGAAGCAC
GGATGCAATCCCGAAAGGACAGCAGGGCCAAGGTTCAGCTCGGCAAAGAC
CCTGCGGAATCTGTTGGCGTCTTTTGGACGGAATTGCGGAGGGCACACGA
GGACGTGACGAGTAGGCTGGACAACTTGGCCTTGACCGATACGAGCAGCA
CCAAAATTAGCTGCAGCAGCACCAAAATTAGCTGCAGCAGCAGCAACAAT
AGCACTGTGGAAGAATCTCTTACTTATTTGAGTGGCAAGGTCCAAGCCCT
CGATAAGCAGATCGCCGACGCCGCGTTGTTCTTGCCTCCGTATGACGTCC
GCCGGGCCCAGGAAGAAGCTAGTGCCTTACGGAGCAAACTGGAGAAAGTG
CGCGCAGCCTTCGCACCACGCAAAAGATTTTCGTTTGCTTCTCGGCGGCG
TACAACAGCAGCAGCAACAGCAACAGCAGCAGAAGAGGAAGGAGCGGTGA
ATGGAGGCTCCGACGAACTGCGCGGAGAGAGCACCAACAGCAGCACCAAA
CAAACCTGGCGTCCGACGCCGTCCGTAGCACCAACGTCATCGAAAGCCTC
TCCAAGCACCACTGCCACTACCAGCGACGAATCGTCTGGTCTGACAGCCA
TGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCTC
CTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAT
CATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACCA
TCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGAC
TGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAATG
CCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGTA
CCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGAA
GATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGATG
GGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGGG
AGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGTTG
AAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGGT
GATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGAC
AAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GGAAAGCTGCGATTGTAA
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Synonyms
Publications