NO12G02930.1, NO12G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02930.1
Unique NameNO12G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1614
Alignment locationchr12:810138..812168 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:810138..812168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02930.1 vs.
Match: EWM25745.1 (isoform a [Nannochloropsis gaditana])

HSP 1 Score: 703.7 bits (1815), Expect = 4.300e-199
Identity = 345/490 (70.41%), Postives = 387/490 (78.98%), Query Frame = 0 
Query:    9 AVLLFALPILIQAR-HHKPEQIHIAFGQTSDLVAVQWSTRSYVQPQQQQQQQQQVEEPLQPHSFVRWGKDPAHLDNVAEGLTVDFIDGGKTKRRQRHHIVNMTGLEASTRYHYQVGDETLSDGLSQIYSFKTAPDAATLGDNLPVRLVVYGDMGVDLNGSTVMRHLLKHLNRDPDLFDGVVHVGDFAYDMYEREGKQGDLFMRQIEPIAARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGEVASKNGPNAPNNWWYSFNLGPVHLVAVSTEIYDFGPLDYIPRQYQWLEEDLKRANSNRTLAPWIIVHGHKPLYCSSPTPEKCDNWYRSQREGVLLSAAAAASAAANANLSTTGNAPCLSSSLRGTDEGRAGKRGRKRKWGLEELFYLYGVDVYICGHEHNSERHYDIAPGGKTGGRTREMGATTYIVTGAGGNREGNTPFESEQPERVASRAEIWGYSILEVHNATHLYYEQRGCD-VEPREGGRER 497
            ++LL AL     A  HH PEQIHIAFG+T D+VAVQWSTR   + +    + QQ      P SFV WGKDP HLD  AEGL++ F+DGG  KR+Q+HH+VNMTGLEASTRYHYQVGD     GLS++YSFKTA DA TL D+LP+RL +YGDMGVD NGSTV+RHLL+H++ DPD  DGV+HVGDFAYDM ER+G QGDLFMRQIEP+AARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGEVAS NGP APNNWWYSFN+GPVHLVAVSTEIYDFGP DYIPRQYQWLE+DLK AN+NRTLAPWIIVHGHKPLYCSSPTP +CDNWYRSQREG+ L   A+ +A    +               G D  R   +GRKRKWGLEELFY YGVD+Y CGHEHNSER +D+   G+TG RTR+M  TTYIVTGAGGNREG TPF S+ P RVASRAE+WGYSILEVHNATH+YYEQR CD  E REG   R
Sbjct:    3 SLLLLALSATSSAALHHAPEQIHIAFGKTPDIVAVQWSTRVLERAEGGGPEGQQ------PRSFVYWGKDPTHLDEAAEGLSISFVDGGARKRQQQHHVVNMTGLEASTRYHYQVGDPAYG-GLSRLYSFKTAADAVTLADDLPIRLAIYGDMGVDKNGSTVVRHLLEHMHGDPDYLDGVLHVGDFAYDMDERDGVQGDLFMRQIEPVAARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGEVASANGPPAPNNWWYSFNIGPVHLVAVSTEIYDFGPYDYIPRQYQWLEKDLKEANANRTLAPWIIVHGHKPLYCSSPTPAQCDNWYRSQREGIPLRPEASTTAEMRGD---------------GIDASRLRGKGRKRKWGLEELFYTYGVDLYFCGHEHNSERLFDVVK-GETGRRTRDMQGTTYIVTGAGGNREGVTPFLSQAPARVASRAEVWGYSILEVHNATHVYYEQRACDRGEGREGEGRR 469
The following BLAST results are available for this feature:
BLAST of NO12G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25745.14.300e-19970.41isoform a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02930NO12G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02930.1NO12G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02930.1.cds1NO12G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02930.1.cds2NO12G02930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02930.1.cds3NO12G02930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02930.1.cds4NO12G02930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02930.1 ID=NO12G02930.1|Name=NO12G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
ATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCAT
CCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTG
GGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTG
CAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCA
GCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACG
TTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGA
CGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCG
TTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAA
TTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGGTGATAATTTG
CCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAG
TACAGTCATGAGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTAT
TTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGA
GAGGGAAAGCAGGGTGATTTATTTATGCGGCAGATCGAACCGATTGCTGC
GAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGGCATACAACT
TCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAG
GTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTT
CAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATT
TCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGAGGAGGAT
CTGAAGCGCGCCAACTCCAACCGCACGCTCGCTCCTTGGATTATTGTCCA
CGGGCATAAACCTCTTTACTGCTCCAGCCCGACCCCCGAGAAATGCGACA
ACTGGTACAGGAGCCAGAGGGAGGGCGTCCTCCTATCTGCTGCTGCTGCT
GCTTCTGCTGCTGCTAATGCCAACCTCAGTACCACTGGGAATGCGCCTTG
TCTTTCATCGTCCTTGCGAGGCACTGATGAAGGGAGGGCGGGGAAAAGAG
GGAGGAAGAGGAAGTGGGGGTTGGAAGAGTTGTTTTACCTGTATGGCGTC
GACGTGTACATTTGCGGGCACGAGCATAATTCGGAGAGGCATTATGATAT
CGCCCCGGGAGGGAAGACGGGTGGGAGGACGAGGGAAATGGGGGCGACGA
CGTATATTGTGACGGGAGCGGGTGGGAACAGAGAGGGCAATACGCCGTTC
GAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGAGCGGAGATTTGGGGTTA
CTCTATCTTGGAGGTGCACAACGCCACACACTTGTATTATGAGCAGCGGG
GATGTGATGTAGAGCCCAGGGAGGGAGGGAGGGAGAGGGATGAATTTGTG
GATGGGGCGTGGCTGGTGCAGCATCGTCATGGGTCCTTTGAGAGGAGGGT
GGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGGATGGGAGAGAGGGAGGA
TCGCGGTAGCATAA
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protein sequence of NO12G02930.1

>NO12G02930.1-protein ID=NO12G02930.1-protein|Name=NO12G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MKVLFLGAAVLLFALPILIQARHHKPEQIHIAFGQTSDLVAVQWSTRSYV
QPQQQQQQQQQVEEPLQPHSFVRWGKDPAHLDNVAEGLTVDFIDGGKTKR
RQRHHIVNMTGLEASTRYHYQVGDETLSDGLSQIYSFKTAPDAATLGDNL
PVRLVVYGDMGVDLNGSTVMRHLLKHLNRDPDLFDGVVHVGDFAYDMYER
EGKQGDLFMRQIEPIAARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGE
VASKNGPNAPNNWWYSFNLGPVHLVAVSTEIYDFGPLDYIPRQYQWLEED
LKRANSNRTLAPWIIVHGHKPLYCSSPTPEKCDNWYRSQREGVLLSAAAA
ASAAANANLSTTGNAPCLSSSLRGTDEGRAGKRGRKRKWGLEELFYLYGV
DVYICGHEHNSERHYDIAPGGKTGGRTREMGATTYIVTGAGGNREGNTPF
ESEQPERVASRAEIWGYSILEVHNATHLYYEQRGCDVEPREGGRERDEFV
DGAWLVQHRHGSFERRVEEEGEEGDERGWERGRIAVA*
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mRNA from alignment at chr12:810138..812168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02930.1 ID=NO12G02930.1|Name=NO12G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at chr12:810138..812168+ (Nannochloropsis oceanica)
ATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCAT
CCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTG
GGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTG
CAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCA
GCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACG
TTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGA
CGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCG
TTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAA
TTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGGTGATAATTTG
CCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAG
TACAGTCATGAGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTAT
TTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGA
GAGGGAAAGCAGGGTGATTTATTTATGCGGCAGATCGAACCGATTGCTGC
GAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGGTGAGGAAGG
GAGGGAGGGAGGAAGGAAGGGAAGAAGGGAAGGAAGAGATGGATGAGGGA
GTGTGGCACGATTGGAAAGGACAAGAGTGACATCATCGTCCCATTTCCTG
ATTAATACGCATATACACTCAGGCATACAACTTCCTGCACTACTCTGAAC
GCTTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCCAAGAATGGG
CCGAATGCGCCCAACAATTGGTGAGCACGTGCCTGAGACGATTGATGACG
GTTAACAGATAAGAGTTGTCATTTTGCTCCGCTAGCCTCTCCCCGCGACA
TCGTGAGAGCTGTACTGACACCCCTCCTATCTTCCCTTTCTCCCTCCCTC
CCTCCCTCCCTCACCCCAAACTAGGTGGTACTCCTTCAATCTTGGACCCG
TGCATCTGGTGGCCGTCTCCACCGAAATTTACGATTTCGGCCCCTTGGAC
TATATCCCACGGCAGTACCAGTGGCTAGGTACCATATCAAGCCCCTCGGG
TCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCTGTCCCTCGC
CTTTGTTTTCCACCTCCAGAACCTAAGTCCTCTTCCTCCTCCCTGATTTC
CCTTTACAGAGGAGGATCTGAAGCGCGCCAACTCCAACCGCACGCTCGCT
CCTTGGATTATTGTCCACGGGCATAAACCTCTTTACTGCTCCAGCCCGAC
CCCCGAGAAATGCGACAACTGGTACAGGAGCCAGAGGGAGGGCGTCCTCC
TATCTGCTGCTGCTGCTGCTTCTGCTGCTGCTAATGCCAACCTCAGTACC
ACTGGGAATGCGCCTTGTCTTTCATCGTCCTTGCGAGGCACTGATGAAGG
GAGGGCGGGGAAAAGAGGGAGGAAGAGGAAGTGGGGGTTGGAAGAGTTGT
TTTACCTGTATGGCGTCGACGTGTACATTTGCGGGCACGAGCATAATTCG
GAGAGGCATTATGATATCGCCCCGGGAGGGAAGACGGGTGGGAGGACGAG
GGAAATGGGGGCGACGACGTATATTGTGACGGGAGCGGGTGGGAACAGAG
AGGGCAATACGCCGTTCGAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGA
GCGGAGATTTGGGGTTACTCTATCTTGGAGGTGCACAACGCCACACACTT
GTATTATGAGCAGCGGGGATGTGATGTAGAGCCCAGGGAGGGAGGGAGGG
AGAGGGATGAATTTGTGGATGGGGCGTGGCTGGTGCAGCATCGTCATGGG
TCCTTTGAGAGGAGGGTGGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGG
ATGGGAGAGAGGGAGGATCGCGGTAGCATAA
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Coding sequence (CDS) from alignment at chr12:810138..812168+

>NO12G02930.1 ID=NO12G02930.1|Name=NO12G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at chr12:810138..812168+ (Nannochloropsis oceanica)
ATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCAT
CCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTG
GGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTG
CAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCA
GCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACG
TTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGA
CGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCG
TTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAA
TTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGGTGATAATTTG
CCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAG
TACAGTCATGAGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTAT
TTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGA
GAGGGAAAGCAGGGTGATTTATTTATGCGGCAGATCGAACCGATTGCTGC
GAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGGCATACAACT
TCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAG
GTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTT
CAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATT
TCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGAGGAGGAT
CTGAAGCGCGCCAACTCCAACCGCACGCTCGCTCCTTGGATTATTGTCCA
CGGGCATAAACCTCTTTACTGCTCCAGCCCGACCCCCGAGAAATGCGACA
ACTGGTACAGGAGCCAGAGGGAGGGCGTCCTCCTATCTGCTGCTGCTGCT
GCTTCTGCTGCTGCTAATGCCAACCTCAGTACCACTGGGAATGCGCCTTG
TCTTTCATCGTCCTTGCGAGGCACTGATGAAGGGAGGGCGGGGAAAAGAG
GGAGGAAGAGGAAGTGGGGGTTGGAAGAGTTGTTTTACCTGTATGGCGTC
GACGTGTACATTTGCGGGCACGAGCATAATTCGGAGAGGCATTATGATAT
CGCCCCGGGAGGGAAGACGGGTGGGAGGACGAGGGAAATGGGGGCGACGA
CGTATATTGTGACGGGAGCGGGTGGGAACAGAGAGGGCAATACGCCGTTC
GAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGAGCGGAGATTTGGGGTTA
CTCTATCTTGGAGGTGCACAACGCCACACACTTGTATTATGAGCAGCGGG
GATGTGATGTAGAGCCCAGGGAGGGAGGGAGGGAGAGGGATGAATTTGTG
GATGGGGCGTGGCTGGTGCAGCATCGTCATGGGTCCTTTGAGAGGAGGGT
GGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGGATGGGAGAGAGGGAGGA
TCGCGGTAGCATAA
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Synonyms
Publications