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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:806729..809811 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02920.1 vs.
Match: EWM25742.1 (uncharacterized protein Naga_100087g24 [Nannochloropsis gaditana]) HSP 1 Score: 313.2 bits (801), Expect = 2.800e-81 Identity = 164/237 (69.20%), Postives = 183/237 (77.22%), Query Frame = 0
Query: 622 MVSQTEFWRKHGQHVVSVEADHFKAIDPVYQLLTRAKLPKASEQVHNYSTQAAEELFLSALKFRRDIIFDSTLAWAPFLMQTLDMVRDNRHTYKRGPGYVETPSPPPSTG------SNNGSISGENGKEGGSSSMVVEERYWAIETTLPRDQQVTPYRVELVGVFVRPEVAVRRAIIRRLLTGRGVPVRDQLRSHALFAKNFEKFSMTFDTVTLYDNNRRHD-RVPGRGGGRGSGRG 852
MVSQ+EFWR+HGQ+VVSVEADHFK IDPVYQLLTR PKASE VH YSTQAAEELFLSALKF+RDIIFDSTLAWAPFL QTL MVRD +H YKRGPGYV +P S G G++G E VV E+YW +E+ + +Q T YRVELVGV+VRPEVAVRRAIIRRLLTGRGVPVR+QLRSHALFAKNFE F++ FDTV LYDNNRRH+ R G+GG G G G
Sbjct: 1 MVSQSEFWRRHGQNVVSVEADHFKEIDPVYQLLTRLNQPKASEAVHTYSTQAAEELFLSALKFKRDIIFDSTLAWAPFLSQTLAMVRDTKHQYKRGPGYVRIRTPSVSDGGAGEGPGGTRRGEGQDGAEASPDGTVVAEKYWEVESEVSEEQMATSYRVELVGVYVRPEVAVRRAIIRRLLTGRGVPVREQLRSHALFAKNFETFALQFDTVLLYDNNRRHEQRDVGKGGEAGGGGG 237
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02920.1 ID=NO12G02920.1|Name=NO12G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2760bp ATGGCCTTTGCTGCAGCAGCCTACGGGCCAAAGACCACGGCTGGAAAGGA CCCGCCGCTACCCCGCCTCTTGTTCACCTCCTCGGCCCCATCAGGCGATG TGTCTGATGCATCTCCCTTGCCAAGTTTTGCAGAGTTTGTGGTCAGCTCC TGGGGGTGCACCAAAGAGCAAGGCGAGAACTATGATAAGGCCCTGGCACT GGCAGAGACGAATCTTTTCGGGCATTTGGACGAGGAGGCAGTTGACGCGA GTAACACCTCCCCGCTGTGTCCCCTTGCACCGACGTCATTGTCTGCGTGC CCTTCCTCCGCCAGTAGTGTCAAGGACGACGAGGACCCCGAAAGACCGAA GCCACCGTTGATCGAGCATTTGGACGACTTGGCCGCGGAATATTTCGGGC GGAACTGGGATCGAGTGGATGAATTGGTTCGAGTCAACCAAGAACGCCTG GAGGCATGGAAAGCCGCCCGGGCCTTCCAAAAGAACGAGCAGCAACAAGG ACAAGAGCATGAGCAGCATGGGAAGGATCATGGAGTAGAGGGATCTTGGC CAGGCTTGGCAACGTTCTCTTCCTCGTCCTTGTCCTGTGCGAGGGAGTCG GTGACGCACCAACAGCAGTCCCAGAAGAGACATAGCCTGCTGGAAACCAC AGAGGGAGCAACAACAGAGGGAAAAGAATCAGAGGCAGCAACGCCAGCTG CGGCAGAAGAAGCAAAGTCAGGAAACCGCTCGTGCACACAAGAAGGCTCC CGCTATCCCCCTTCTTCCTCCGAACCTGCTTTAGGCAGCGTCATCGAAAT CAACGAGGGTGGAATCGATCTCTTACTCTCCGGCCTGCCAGGCCCTGCCG TACAAAACGGCCGACAAACCACCATTCCAAATCTCGAACAAGCCGAGCTC ATCCTTCTGGAGGTCCACTCTGACCATTGCCCTGCCTGCCGGCGCCTTGC CCCCTCCCTCGCTACTGCTGCGGCGCATTACAGGGACAATCCATCCGTGT TATTCGTCACTGTCAACGGCCCTGAGAATCCTGCCTTTCTCGAGCGGTTA GACGTACAATGGTTCCCGACCTTGAAAGTCATCCATCGCAAGAGCAACAT GTTGTGGGACTGGCCTCCTCTGCCTGTGGGAGGGCTAGAAAGCGAGGAGA TAATCAAGAGAATGGGGGAGTGGTTGGCTCAGCCGTCCTCCCTCTCGGCG TCGGGGGTGGATGGGGTGTTGATGGACCAGCAGGGGTATTATGAAGACGG CGAGAAGGGGAGGGATGGAGGGGAGGGAGGAGAGGATGGGGAAGGGAGAG GGGAAGGAGGAGCATCAAGAGCAGCTGCTGCCGTTGGACCTCCCCCGGGA GTCAGCAACGATGACGAGGATCAAGCAAAGGAAGGGGAAGGAGACACAAA AAGAGTAGAAAAGAATGGAGCAGCGACACCATCACCACCACACTCAACCT CCTCGACCTTCCCTCCCTCCCTCCCCTTTCTCCAAAAGCGCAAGCCCTCC TCCTCCTCCCCCTGCGCCAAGCCCCCCAAAAAAACCCACCTCGATACCAT CTTAAATAGACCTCCCGGCGCTGCTGCTGCTGATGCTGCTGCTGTTGCAA GCCAAGTTCCCCATGACGACCAACCCCCCTCCTTCGACCAGATTTCCCAG CTCCACACCGAGCTCAGCTGCAGACGTGACTTGGCTTCCCGCCGGAAGTG GGTCAGTGCCATGGAGATATTCAGAGCCTTAGGGTGTCACGACGAGGCGT CCTGCCGGGCCTTGACCAGGGCGCAGGGGAGGGGGAGGGATGAGAGGGTG GAGCCTCCACATTTAATATTGTTGGGGGGGGGGATGGGCGCGGGGAAAAC GACGTTGAAGAAGATGGTGAGCCAGACTGAGTTCTGGAGGAAGCACGGGC AGCATGTAGTCTCCGTCGAAGCCGACCACTTCAAAGCCATCGATCCTGTC TATCAGCTCCTAACCCGCGCGAAGCTACCTAAGGCGTCCGAGCAGGTCCA CAACTACAGCACGCAGGCAGCAGAGGAGCTCTTTCTTTCCGCCCTAAAAT TTAGGAGGGACATCATCTTTGACTCGACCCTAGCCTGGGCCCCCTTTCTT ATGCAAACCCTGGACATGGTTCGCGACAACCGCCATACCTACAAACGCGG CCCGGGCTACGTGGAGACCCCATCCCCCCCTCCCTCCACCGGCAGCAACA ACGGCAGTATCAGCGGTGAGAATGGGAAGGAGGGAGGATCATCCTCGATG GTTGTAGAGGAAAGGTATTGGGCGATCGAGACAACGTTACCGAGGGATCA GCAGGTAACGCCTTACAGGGTGGAGTTGGTTGGTGTCTTTGTACGGCCGG AGGTCGCCGTACGGAGGGCGATTATTCGGAGGTTGTTGACGGGGAGAGGG GTACCGGTCAGGGATCAGTTGAGGAGCCATGCGTTGTTTGCGAAGAATTT TGAGAAATTTTCCATGACGTTTGACACGGTGACATTGTACGATAATAATC GGAGGCATGACCGTGTGCCGGGGAGAGGAGGAGGAAGGGGGTCAGGAAGA GGGGGAGGCAATGAGGAGGAGAGGCTGGTGGGGTCACGGGTGATTGCAAG AAAGGACGTCGAGGACACAGAATTGAAAATTTTGGATGTCGAAGCCTTTA GAGCGTTTCAGGCAGTTGCAAGGATAAATACAGATGCAACGTCGGTCGAT GAGTTGTATGAGGAGCGGCGAATGGAAAGGGGGGATGGAGAGGAAAGGGT TGTGGAATAA back to topprotein sequence of NO12G02920.1 >NO12G02920.1-protein ID=NO12G02920.1-protein|Name=NO12G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=920bp MAFAAAAYGPKTTAGKDPPLPRLLFTSSAPSGDVSDASPLPSFAEFVVSS WGCTKEQGENYDKALALAETNLFGHLDEEAVDASNTSPLCPLAPTSLSAC PSSASSVKDDEDPERPKPPLIEHLDDLAAEYFGRNWDRVDELVRVNQERL EAWKAARAFQKNEQQQGQEHEQHGKDHGVEGSWPGLATFSSSSLSCARES VTHQQQSQKRHSLLETTEGATTEGKESEAATPAAAEEAKSGNRSCTQEGS RYPPSSSEPALGSVIEINEGGIDLLLSGLPGPAVQNGRQTTIPNLEQAEL ILLEVHSDHCPACRRLAPSLATAAAHYRDNPSVLFVTVNGPENPAFLERL DVQWFPTLKVIHRKSNMLWDWPPLPVGGLESEEIIKRMGEWLAQPSSLSA SGVDGVLMDQQGYYEDGEKGRDGGEGGEDGEGRGEGGASRAAAAVGPPPG VSNDDEDQAKEGEGDTKRVEKNGAATPSPPHSTSSTFPPSLPFLQKRKPS SSSPCAKPPKKTHLDTILNRPPGAAAADAAAVASQVPHDDQPPSFDQISQ LHTELSCRRDLASRRKWVSAMEIFRALGCHDEASCRALTRAQGRGRDERV EPPHLILLGGGMGAGKTTLKKMVSQTEFWRKHGQHVVSVEADHFKAIDPV YQLLTRAKLPKASEQVHNYSTQAAEELFLSALKFRRDIIFDSTLAWAPFL MQTLDMVRDNRHTYKRGPGYVETPSPPPSTGSNNGSISGENGKEGGSSSM VVEERYWAIETTLPRDQQVTPYRVELVGVFVRPEVAVRRAIIRRLLTGRG VPVRDQLRSHALFAKNFEKFSMTFDTVTLYDNNRRHDRVPGRGGGRGSGR GGGNEEERLVGSRVIARKDVEDTELKILDVEAFRAFQAVARINTDATSVD ELYEERRMERGDGEERVVE* back to topmRNA from alignment at chr12:806729..809811+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02920.1 ID=NO12G02920.1|Name=NO12G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3083bp|location=Sequence derived from alignment at chr12:806729..809811+ (Nannochloropsis oceanica) ATGGCCTTTGCTGCAGCAGCCTACGGGCCAAAGACCACGGCTGGAAAGGA
CCCGCCGCTACCCCGCCTCTTGTTCACCTCCTCGGCCCCATCAGGCGATG
TGTCTGATGCATCTCCCTTGCCAAGTTTTGCAGAGTTTGTGGTCAGCTCC
TGGGGGTGCACCAAAGAGCAAGGCGAGAACTATGATAAGGCCCTGGCACT
GGCAGAGACGAATCTTTTCGGGCATTTGGACGAGGAGGCAGTTGACGCGA
GTAACACCTCCCCGCTGTGTCCCCTTGCACCGACGTCATTGTCTGCGTGC
CCTTCCTCCGCCAGTAGTGTCAAGGACGACGAGGACCCCGAAAGACCGAA
GCCACCGTTGATCGAGCATTTGGACGACTTGGCCGCGGAATATTTCGGGC
GGAACTGGGATCGAGTGGATGAATTGGTTCGAGTCAACCAAGAACGCCTG
GAGGCATGGAAAGCCGCCCGGGCCTTCCAAAAGAACGAGCAGCAACAAGG
ACAAGAGCATGAGCAGCATGGGAAGGATCATGGAGTAGAGGGATCTTGGC
CAGGCTTGGCAACGTTCTCTTCCTCGTCCTTGTCCTGTGCGAGGGAGTCG
GTGACGCACCAACAGCAGTCCCAGAAGAGACATAGCCTGCTGGAAACCAC
AGAGGGAGCAACAACAGAGGGAAAAGAATCAGAGGCAGCAACGCCAGCTG
CGGCAGAAGAAGCAAAGTCAGGAAACCGCTCGTGCACACAAGAAGGCTCC
CGCTATCCCCCTTCTTCCTCCGAACCTGCTTTAGGCAGCGTCATCGAAAT
CAACGAGGGTGGAATCGATCTCTTACTCTCCGGCCTGCCAGGCCCTGCCG
TACAAAACGGCCGACAAACCACCATTCCAAATCTCGAACAAGCCGAGCTC
ATCCTTCTGGAGGTCCACTCTGACCATTGCCCTGCCTGCCGGCGCCTTGC
CCCCTCCCTCGCTACTGCTGCGGCGCATTACAGGGACAATCCATCCGTGT
TATTCGTCACTGTCAACGGCCCTGAGAATCCTGCCTTTCTCGAGCGGTTA
GACGTACAATGGTTCCCGACCTTGAAAGTCATCCATCGCAAGAGCAACAT
GTTGTGGGACTGGCCTCCTCTGCCTGTGGGAGGGCTAGAAAGCGAGGAGA
TAATCAAGAGAATGGGGGAGTGGTTGGCTCAGCCGTCCTCCCTCTCGGCG
TCGGGGGTGGATGGGGTGTTGATGGACCAGCAGGGGTATTATGAAGACGG
CGAGAAGGGGAGGGATGGAGGGGAGGGAGGAGAGGATGGGGAAGGGAGAG
GGGAAGGAGGAGCATCAAGAGCAGCTGCTGCCGTTGGACCTCCCCCGGGA
GTCAGCAACGATGACGAGGATCAAGCAAAGGAAGGGGAAGGAGACACAAA
AAGAGTAGAAAAGAATGGAGCAGCGACACCATCACCACCACACTCAACCT
CCTCGACCTTCCCTCCCTCCCTCCCCTTTCTCCAAAAGCGCAAGCCCTCC
TCCTCCTCCCCCTGCGCCAAGCCCCCCAAAAAAACCCACCTCGATACCAT
CTTAAATAGACCTCCCGGCGCTGCTGCTGCTGATGCTGCTGCTGTTGCAA
GCCAAGTTCCCCATGACGACCAACCCCCCTCCTTCGACCAGATTTCCCAG
CTCCACACCGAGCTCAGCTGCAGACGTGACTTGGCTTCCCGCCGGAAGTG
GGTCAGTGCCATGGAGATATTCAGAGCCTTAGGGTGTCACGACGAGGCGT
CCTGCCGGGCCTTGACCAGGGCGCAGGGGAGGGGGAGGGATGAGAGGGTG
GAGCCTCCACATTTAATATTGTTGGGGGGGGGGATGGGCGCGGGGAAAAC
GACGTTGAAGAAGATGGTGAGCCAGACTGAGTTCTGGAGGAAGCACGGGC
AGGTAGGCGAGGAAGGAGGGAGGGACGGAGGGAGGGACGGAGGGACGGAC
GGATGGGTAGAAAGGGAGAATGGGGTGTGTGCAGGTGATCTTGAGAAGAG
GTCCGGACAGGGAGGAGGGTACATTATGTTTTTGGCGACACTAACTCCCC
CCCCCTTTCCTTCCTTCGTCCATTCTTTCGTCCTTTTGTAGCATGTAGTC
TCCGTCGAAGCCGACCACTTCAAAGCCATCGATCCTGTCTATCAGCTCCT
AACCCGCGCGAAGCTACCTAAGGCGTCCGAGCAGGTCCACAACTACAGCA
CGCAGGCAGCAGAGGAGCTCTTTCTTTCCGCCCTAAAATTTAGGAGGGAC
ATCATCTTTGACTCGACCCTAGGTAGGACTGGAAGGAGGAAGGGGGGGAG
GGCGAGGTCGGGAGGGGCCTTTGTGACAAGTGCTCACACACACACACACA
CACATACCCAACCTCCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCACATC
GCACAGCCTGGGCCCCCTTTCTTATGCAAACCCTGGACATGGTTCGCGAC
AACCGCCATACCTACAAACGCGGCCCGGGCTACGTGGAGACCCCATCCCC
CCCTCCCTCCACCGGCAGCAACAACGGCAGTATCAGCGGTGAGAATGGGA
AGGAGGGAGGATCATCCTCGATGGTTGTAGAGGAAAGGTATTGGGCGATC
GAGACAACGTTACCGAGGGATCAGCAGGTAACGCCTTACAGGGTGGAGTT
GGTTGGTGTCTTTGTACGGCCGGAGGTCGCCGTACGGAGGGCGATTATTC
GGAGGTTGTTGACGGGGAGAGGGGTACCGGTCAGGGATCAGTTGAGGAGC
CATGCGTTGTTTGCGAAGAATTTTGAGAAATTTTCCATGACGTTTGACAC
GGTGACATTGTACGATAATAATCGGAGGCATGACCGTGTGCCGGGGAGAG
GAGGAGGAAGGGGGTCAGGAAGAGGGGGAGGCAATGAGGAGGAGAGGCTG
GTGGGGTCACGGGTGATTGCAAGAAAGGACGTCGAGGACACAGAATTGAA
AATTTTGGATGTCGAAGCCTTTAGAGCGTTTCAGGCAGTTGCAAGGATAA
ATACAGATGCAACGTCGGTCGATGAGTTGTATGAGGAGCGGCGAATGGAA
AGGGGGGATGGAGAGGAAAGGGTTGTGGAATAA back to topCoding sequence (CDS) from alignment at chr12:806729..809811+ >NO12G02920.1 ID=NO12G02920.1|Name=NO12G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at chr12:806729..809811+ (Nannochloropsis oceanica) ATGGCCTTTGCTGCAGCAGCCTACGGGCCAAAGACCACGGCTGGAAAGGA CCCGCCGCTACCCCGCCTCTTGTTCACCTCCTCGGCCCCATCAGGCGATG TGTCTGATGCATCTCCCTTGCCAAGTTTTGCAGAGTTTGTGGTCAGCTCC TGGGGGTGCACCAAAGAGCAAGGCGAGAACTATGATAAGGCCCTGGCACT GGCAGAGACGAATCTTTTCGGGCATTTGGACGAGGAGGCAGTTGACGCGA GTAACACCTCCCCGCTGTGTCCCCTTGCACCGACGTCATTGTCTGCGTGC CCTTCCTCCGCCAGTAGTGTCAAGGACGACGAGGACCCCGAAAGACCGAA GCCACCGTTGATCGAGCATTTGGACGACTTGGCCGCGGAATATTTCGGGC GGAACTGGGATCGAGTGGATGAATTGGTTCGAGTCAACCAAGAACGCCTG GAGGCATGGAAAGCCGCCCGGGCCTTCCAAAAGAACGAGCAGCAACAAGG ACAAGAGCATGAGCAGCATGGGAAGGATCATGGAGTAGAGGGATCTTGGC CAGGCTTGGCAACGTTCTCTTCCTCGTCCTTGTCCTGTGCGAGGGAGTCG GTGACGCACCAACAGCAGTCCCAGAAGAGACATAGCCTGCTGGAAACCAC AGAGGGAGCAACAACAGAGGGAAAAGAATCAGAGGCAGCAACGCCAGCTG CGGCAGAAGAAGCAAAGTCAGGAAACCGCTCGTGCACACAAGAAGGCTCC CGCTATCCCCCTTCTTCCTCCGAACCTGCTTTAGGCAGCGTCATCGAAAT CAACGAGGGTGGAATCGATCTCTTACTCTCCGGCCTGCCAGGCCCTGCCG TACAAAACGGCCGACAAACCACCATTCCAAATCTCGAACAAGCCGAGCTC ATCCTTCTGGAGGTCCACTCTGACCATTGCCCTGCCTGCCGGCGCCTTGC CCCCTCCCTCGCTACTGCTGCGGCGCATTACAGGGACAATCCATCCGTGT TATTCGTCACTGTCAACGGCCCTGAGAATCCTGCCTTTCTCGAGCGGTTA GACGTACAATGGTTCCCGACCTTGAAAGTCATCCATCGCAAGAGCAACAT GTTGTGGGACTGGCCTCCTCTGCCTGTGGGAGGGCTAGAAAGCGAGGAGA TAATCAAGAGAATGGGGGAGTGGTTGGCTCAGCCGTCCTCCCTCTCGGCG TCGGGGGTGGATGGGGTGTTGATGGACCAGCAGGGGTATTATGAAGACGG CGAGAAGGGGAGGGATGGAGGGGAGGGAGGAGAGGATGGGGAAGGGAGAG GGGAAGGAGGAGCATCAAGAGCAGCTGCTGCCGTTGGACCTCCCCCGGGA GTCAGCAACGATGACGAGGATCAAGCAAAGGAAGGGGAAGGAGACACAAA AAGAGTAGAAAAGAATGGAGCAGCGACACCATCACCACCACACTCAACCT CCTCGACCTTCCCTCCCTCCCTCCCCTTTCTCCAAAAGCGCAAGCCCTCC TCCTCCTCCCCCTGCGCCAAGCCCCCCAAAAAAACCCACCTCGATACCAT CTTAAATAGACCTCCCGGCGCTGCTGCTGCTGATGCTGCTGCTGTTGCAA GCCAAGTTCCCCATGACGACCAACCCCCCTCCTTCGACCAGATTTCCCAG CTCCACACCGAGCTCAGCTGCAGACGTGACTTGGCTTCCCGCCGGAAGTG GGTCAGTGCCATGGAGATATTCAGAGCCTTAGGGTGTCACGACGAGGCGT CCTGCCGGGCCTTGACCAGGGCGCAGGGGAGGGGGAGGGATGAGAGGGTG GAGCCTCCACATTTAATATTGTTGGGGGGGGGGATGGGCGCGGGGAAAAC GACGTTGAAGAAGATGGTGAGCCAGACTGAGTTCTGGAGGAAGCACGGGC AGCATGTAGTCTCCGTCGAAGCCGACCACTTCAAAGCCATCGATCCTGTC TATCAGCTCCTAACCCGCGCGAAGCTACCTAAGGCGTCCGAGCAGGTCCA CAACTACAGCACGCAGGCAGCAGAGGAGCTCTTTCTTTCCGCCCTAAAAT TTAGGAGGGACATCATCTTTGACTCGACCCTAGCCTGGGCCCCCTTTCTT ATGCAAACCCTGGACATGGTTCGCGACAACCGCCATACCTACAAACGCGG CCCGGGCTACGTGGAGACCCCATCCCCCCCTCCCTCCACCGGCAGCAACA ACGGCAGTATCAGCGGTGAGAATGGGAAGGAGGGAGGATCATCCTCGATG GTTGTAGAGGAAAGGTATTGGGCGATCGAGACAACGTTACCGAGGGATCA GCAGGTAACGCCTTACAGGGTGGAGTTGGTTGGTGTCTTTGTACGGCCGG AGGTCGCCGTACGGAGGGCGATTATTCGGAGGTTGTTGACGGGGAGAGGG GTACCGGTCAGGGATCAGTTGAGGAGCCATGCGTTGTTTGCGAAGAATTT TGAGAAATTTTCCATGACGTTTGACACGGTGACATTGTACGATAATAATC GGAGGCATGACCGTGTGCCGGGGAGAGGAGGAGGAAGGGGGTCAGGAAGA GGGGGAGGCAATGAGGAGGAGAGGCTGGTGGGGTCACGGGTGATTGCAAG AAAGGACGTCGAGGACACAGAATTGAAAATTTTGGATGTCGAAGCCTTTA GAGCGTTTCAGGCAGTTGCAAGGATAAATACAGATGCAACGTCGGTCGAT GAGTTGTATGAGGAGCGGCGAATGGAAAGGGGGGATGGAGAGGAAAGGGT TGTGGAATAA back to top
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