NO12G02830.1, NO12G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02830.1
Unique NameNO12G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1639
Alignment locationchr12:788700..790924 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:788700..790924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02830.1 vs.
Match: EWM25748.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 256.5 bits (654), Expect = 1.500e-64
Identity = 155/325 (47.69%), Postives = 194/325 (59.69%), Query Frame = 0 
Query:   10 RHTSLPRLLLIPQLFLFASSSSVAPS---FILVPPSLLPPHRAFAIFKPQPSSWSSTSSRRISSSLSRNSSPSLSSFDIPFRTIIPVTPRVSHRRVYPADPILFLGSCFSDNMGGKLKENLKMNVEINPFGTAYNPVSIYRCLERLATGRPFEEEELEEHPQDGRWFSFDHHTSFSARDPSKVLSNINSRLAQGHVSLKHAKHVFLTLGTAHAYVLLSKE---RKGREKGE------------------------KRVVANC--------HRLPATSFRRELLDIPKIVSSLQSAIQSIRVINTECTITFTVSPVRHLRNAAGDA 297
            + TSL  LL++  + L A S S        +L   S LPP        P P   +S   + + +  +R+S+   SSF   FRTI+P+TPR    R++PAD + F+GSCFSD MG  LKE LKM VE+NPFGT+YNPVSI RCL RLATGR F++EEL  HPQDGRW S +HH+ FS RD S  L+ IN+RL  G   L+ A+HVF+TLGTAHAYV   K     K RE+GE                        +   AN         HRLPA  FRRELLD P+IV +L   ++SIR +NT CTI+FTVSPVRH+RNA G+A
Sbjct:   34 KKTSLRSLLVVKNIMLVACSFSPPQDGRLAMLSASSFLPP--------PLPRVGTSRPDQLLVTR-TRSSTRISSSFHNSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEA 349
The following BLAST results are available for this feature:
BLAST of NO12G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25748.11.500e-6447.69conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02830NO12G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02830.1NO12G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02830.1.cds1NO12G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02830.1.cds2NO12G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02830.1.cds3NO12G02830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02830.1.cds4NO12G02830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02830.1 ID=NO12G02830.1|Name=NO12G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp
GTGTAGAGAGGTGAGTGGGGACGCGCGAAGAACACAGCTGTTTGAATTCA
GCGAATGGGTTGTCAACTTCGTACGTCCAAACTACTTGACCCACCGCCAC
AGTCAATTATAATTGCCGCCACCATGCACAGGACGAGGACCTGCACTTGA
GAGGATATCAAGTCCGTCTTGGTCCACCACATGCTTATGGCAGCCTGTTC
CCCACGCCGTCACACCTCCCTACCACGACTTCTCCTGATCCCGCAGCTCT
TCCTCTTTGCTTCCTCCTCTTCAGTGGCGCCATCATTTATCCTCGTCCCT
CCATCACTTCTACCTCCCCATCGTGCTTTCGCCATCTTTAAGCCGCAGCC
CAGCAGTTGGAGCAGCACCAGCAGCAGGCGCATTTCATCTTCACTATCCC
GAAATTCCTCCCCCTCCCTCTCCTCGTTCGACATACCCTTCCGTACCATC
ATTCCCGTTACTCCTCGCGTCTCTCACCGACGCGTCTACCCCGCAGACCC
TATTCTGTTCCTCGGCTCCTGCTTCTCAGACAATATGGGCGGGAAACTTA
AAGAGAATCTAAAAATGAATGTGGAGATCAACCCCTTTGGCACAGCATAT
AATCCGGTATCGATTTACCGGTGCTTGGAGCGCTTGGCGACTGGGAGGCC
ATTTGAGGAGGAAGAGTTGGAGGAGCATCCCCAGGATGGACGGTGGTTCA
GCTTTGACCACCACACCAGCTTCAGTGCCCGTGATCCGAGTAAGGTCTTG
TCGAATATTAACTCCCGCCTGGCTCAAGGCCACGTCTCATTAAAGCATGC
CAAGCATGTCTTTTTGACTCTGGGAACAGCACACGCGTATGTGCTTCTAT
CCAAGGAGAGGAAGGGAAGGGAGAAAGGGGAAAAGAGGGTTGTGGCGAAT
TGCCATCGGTTGCCGGCGACGAGCTTTCGACGGGAATTGCTCGACATACC
CAAGATCGTCTCATCCCTCCAATCGGCCATTCAATCCATACGGGTCATCA
ACACAGAGTGCACTATCACCTTCACTGTCTCTCCTGTCAGACATCTCCGC
AACGCCGCCGGGGACGCAATTCAAAGCTCTCGCAGCAAAGCCCAACTTCT
CGCTGCCATCCACCAAGTCCTCGATGAAGACCTTCTTTCACCCTCCTCCT
CTCCTTCCGTTTCCCCCTCTTCCTCCCCTTCCTCCTCTCTCCTCTCCTAT
TTTCCCGCCTATGAAATCATGATGGATGATCTGCGTGATTACCGTTTTTA
TGCCCCCGACATGATCCATCCCTCCCCTGTCGCACTCGAATACATCTACT
CGCGCTTCGCCGACGCCTACCTAGACTTCTCCCCGCCTTCCTTTCTCCTT
CGCAAAGACCTTGAGACTTTACGACGCAACCTACAACACCGTCCGTTAGA
CAGGACAAGTCCGGCGCACCAGCTATTCTTGAAGCAGCAGTTGATTAAAA
TGGAAGGGTTGCAAGCCTCGTGGCCGCATTTGGACTTTGAAGCCGAGCGG
GCAGTGGTCAGGAAGGGATTGGTGGAGTGAAGCGAGAATTAGCTATGTCC
ATAGTGAGACAGGGCAAATAGGAAATGTGCTCATAAAAGAAAATCATCAA
ATAAACTCAAAATATGACCAACATGGCAGGTAGCGAAGA
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protein sequence of NO12G02830.1

>NO12G02830.1-protein ID=NO12G02830.1-protein|Name=NO12G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MLMAACSPRRHTSLPRLLLIPQLFLFASSSSVAPSFILVPPSLLPPHRAF
AIFKPQPSSWSSTSSRRISSSLSRNSSPSLSSFDIPFRTIIPVTPRVSHR
RVYPADPILFLGSCFSDNMGGKLKENLKMNVEINPFGTAYNPVSIYRCLE
RLATGRPFEEEELEEHPQDGRWFSFDHHTSFSARDPSKVLSNINSRLAQG
HVSLKHAKHVFLTLGTAHAYVLLSKERKGREKGEKRVVANCHRLPATSFR
RELLDIPKIVSSLQSAIQSIRVINTECTITFTVSPVRHLRNAAGDAIQSS
RSKAQLLAAIHQVLDEDLLSPSSSPSVSPSSSPSSSLLSYFPAYEIMMDD
LRDYRFYAPDMIHPSPVALEYIYSRFADAYLDFSPPSFLLRKDLETLRRN
LQHRPLDRTSPAHQLFLKQQLIKMEGLQASWPHLDFEAERAVVRKGLVE*
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mRNA from alignment at chr12:788700..790924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02830.1 ID=NO12G02830.1|Name=NO12G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at chr12:788700..790924+ (Nannochloropsis oceanica)
GTGTAGAGAGGTGAGTGGGGACGCGCGAAGAACACAGCTGTTTGAATTCA
GCGAATGGGTTGTCAACTTCGTACGTCCAAACTACTTGACCCACCGCCAC
AGTCAATTATAATTGCCGCCACCATGCACAGGACGAGGACCTGCACTTGA
GAGGATATCAAGGTGCGGACAACAAGGCCAGGGCTTGCAGGGGCAGTTCA
AAAGCCTCAATCATCATTCTCCACCCCTACCACATTAGTCCTCACTCCCT
GCTCACATTAGTCCTCACTCCCCCCAGTCCGTCTTGGTCCACCACATGCT
TATGGCAGCCTGTTCCCCACGCCGTCACACCTCCCTACCACGACTTCTCC
TGATCCCGCAGCTCTTCCTCTTTGCTTCCTCCTCTTCAGTGGCGCCATCA
TTTATCCTCGTCCCTCCATCACTTCTACCTCCCCATCGTGCTTTCGCCAT
CTTTAAGCCGCAGCCCAGCAGTTGGAGCAGCACCAGCAGCAGGCGCATTT
CATCTTCACTATCCCGAAATTCCTCCCCCTCCCTCTCCTCGTTCGACATA
CCCTTCCGTACCATCATTCCCGTTACTCCTCGCGTCTCTCACCGACGCGT
CTACCCCGCAGACCCTATTCTGTTCCTCGGCTCCTGCTTCTCAGACAATA
TGGGCGGGAAACTTAAAGAGAATCTAAAAATGAATGTGGAGATCAACCCC
TTTGGCACAGCATATAATCCGGTATCGATTTACCGGTGCTTGGAGCGCTT
GGCGACTGGGAGGCCATTTGAGGAGGAAGAGTTGGAGGAGCATCCCCAGG
ATGGACGGTGGTTCAGGTGAGAAAAGAGGGAGAGAAGAATTGCAGAGGCT
GGGCTGGAGAGAGAATGAAGGCGGATTGAATCCTCTCCTGATAGAGGCTG
CAAAAAATTAAATCCTTTAAACAAACCGAAAAACAAACAAATTTGGGAAA
TGAATAGACCAGTATGAAGGGCTTGGCATTGACTCACGCTCCAACTCATA
CTCCCGAGCCCCCCCCCATCCCCTCATCCTGCCCACACCACGTTAAGCTT
TGACCACCACACCAGCTTCAGTGCCCGTGATCCGAGTAAGGTCTTGTCGA
ATATTAACTCCCGCCTGGCTCAAGGCCACGTCTCATTAAAGCATGCCAAG
CATGTCTTTTTGACTCTGGGAACAGCACACGCGTATGTGCTTCTATCCAA
GGAGAGGAAGGGAAGGGAGAAAGGGGAAAAGAGGGTTGTGGCGAATTGCC
ATCGGTTGCCGGCGACGAGCTTTCGACGGGAATTGCTCGGTGCGAAAAAC
ACTTTTGAGACAAAATAAAGAACTTGTTTTTCTTAAGATGTAGTCGCCTT
CCCCTCATTCTGCCTCTGTATTTCACGCCCTCCTCTTAAGTTTCCATTCT
CACATTTACCATTTTCCTCTCCTGTCCCCTCTTCACGAACAGACATACCC
AAGATCGTCTCATCCCTCCAATCGGCCATTCAATCCATACGGGTCATCAA
CACAGAGTGCACTATCACCTTCACTGTCTCTCCTGTCAGACATCTCCGCA
ACGCCGCCGGGGACGCAAGTATGTAACGCTCTTGCCCTTGCCTTCACGTC
CTCCCGCTTCTCAATCTCGTCTTCCCATCCTCTTAACCCACACAATATGC
AACAGTTCAAAGCTCTCGCAGCAAAGCCCAACTTCTCGCTGCCATCCACC
AAGTCCTCGATGAAGACCTTCTTTCACCCTCCTCCTCTCCTTCCGTTTCC
CCCTCTTCCTCCCCTTCCTCCTCTCTCCTCTCCTATTTTCCCGCCTATGA
AATCATGATGGATGATCTGCGTGATTACCGTTTTTATGCCCCCGACATGA
TCCATCCCTCCCCTGTCGCACTCGAATACATCTACTCGCGCTTCGCCGAC
GCCTACCTAGACTTCTCCCCGCCTTCCTTTCTCCTTCGCAAAGACCTTGA
GACTTTACGACGCAACCTACAACACCGTCCGTTAGACAGGACAAGTCCGG
CGCACCAGCTATTCTTGAAGCAGCAGTTGATTAAAATGGAAGGGTTGCAA
GCCTCGTGGCCGCATTTGGACTTTGAAGCCGAGCGGGCAGTGGTCAGGAA
GGGATTGGTGGAGTGAAGCGAGAATTAGCTATGTCCATAGTGAGACAGGG
CAAATAGGAAATGTGCTCATAAAAGAAAATCATCAAATAAACTCAAAATA
TGACCAACATGGCAGGTAGCGAAGA
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Coding sequence (CDS) from alignment at chr12:788700..790924+

>NO12G02830.1 ID=NO12G02830.1|Name=NO12G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr12:788700..790924+ (Nannochloropsis oceanica)
ATGCTTATGGCAGCCTGTTCCCCACGCCGTCACACCTCCCTACCACGACT
TCTCCTGATCCCGCAGCTCTTCCTCTTTGCTTCCTCCTCTTCAGTGGCGC
CATCATTTATCCTCGTCCCTCCATCACTTCTACCTCCCCATCGTGCTTTC
GCCATCTTTAAGCCGCAGCCCAGCAGTTGGAGCAGCACCAGCAGCAGGCG
CATTTCATCTTCACTATCCCGAAATTCCTCCCCCTCCCTCTCCTCGTTCG
ACATACCCTTCCGTACCATCATTCCCGTTACTCCTCGCGTCTCTCACCGA
CGCGTCTACCCCGCAGACCCTATTCTGTTCCTCGGCTCCTGCTTCTCAGA
CAATATGGGCGGGAAACTTAAAGAGAATCTAAAAATGAATGTGGAGATCA
ACCCCTTTGGCACAGCATATAATCCGGTATCGATTTACCGGTGCTTGGAG
CGCTTGGCGACTGGGAGGCCATTTGAGGAGGAAGAGTTGGAGGAGCATCC
CCAGGATGGACGGTGGTTCAGCTTTGACCACCACACCAGCTTCAGTGCCC
GTGATCCGAGTAAGGTCTTGTCGAATATTAACTCCCGCCTGGCTCAAGGC
CACGTCTCATTAAAGCATGCCAAGCATGTCTTTTTGACTCTGGGAACAGC
ACACGCGTATGTGCTTCTATCCAAGGAGAGGAAGGGAAGGGAGAAAGGGG
AAAAGAGGGTTGTGGCGAATTGCCATCGGTTGCCGGCGACGAGCTTTCGA
CGGGAATTGCTCGACATACCCAAGATCGTCTCATCCCTCCAATCGGCCAT
TCAATCCATACGGGTCATCAACACAGAGTGCACTATCACCTTCACTGTCT
CTCCTGTCAGACATCTCCGCAACGCCGCCGGGGACGCAATTCAAAGCTCT
CGCAGCAAAGCCCAACTTCTCGCTGCCATCCACCAAGTCCTCGATGAAGA
CCTTCTTTCACCCTCCTCCTCTCCTTCCGTTTCCCCCTCTTCCTCCCCTT
CCTCCTCTCTCCTCTCCTATTTTCCCGCCTATGAAATCATGATGGATGAT
CTGCGTGATTACCGTTTTTATGCCCCCGACATGATCCATCCCTCCCCTGT
CGCACTCGAATACATCTACTCGCGCTTCGCCGACGCCTACCTAGACTTCT
CCCCGCCTTCCTTTCTCCTTCGCAAAGACCTTGAGACTTTACGACGCAAC
CTACAACACCGTCCGTTAGACAGGACAAGTCCGGCGCACCAGCTATTCTT
GAAGCAGCAGTTGATTAAAATGGAAGGGTTGCAAGCCTCGTGGCCGCATT
TGGACTTTGAAGCCGAGCGGGCAGTGGTCAGGAAGGGATTGGTGGAGTGA
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Synonyms
Publications