NO12G02810.1, NO12G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02810.1
Unique NameNO12G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2296
Alignment locationchr12:785153..787552 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:785153..787552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02810.1 vs.
Match: EWM25751.1 (Conserved oligomeric Golgi complex, subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 543.1 bits (1398), Expect = 9.500e-151
Identity = 333/566 (58.83%), Postives = 386/566 (68.20%), Query Frame = 0 
Query:    1 MDELALVIQHTESYDRFVRYLAAEAKKTRSSSSSSSIQESGTEENKEMVVLPAATDLNGAIAEVSGPFAVLEHHLMRSSIHKALEIDELPPLAPLTCHQGG--LQGSGIAAASAAGSGREEEVYGPGAVGTGSGGAPQTSSCVDDTFYVVRRCARRALVTGHAGTASAIVNYINSTLLDELMPVLSAKVRSLREMPLPVGLNPATGNAAAPSNSSGGGGRKAGAAIVAAKQHWSRVKGGFEAGLETAQQLTAVAAGSLMGG-AGIGLVGGGAGTITYYPATEAKLALDRLVMLNNLAACAVYTIKLQQELMAEVPSIFQDDPSTDQLMVCLGEMSETSRQFEQACEEGLQHVGALIKPKIRGFLQDALGVQSHEGGG-----GEGGGRGWGRVRQRLSDQGFES---------------------LKMALVD------------YLVKRLEYLLMRKSFTQLGGLQFDKDLRCLLAFFPSGGEDG-----GRKGGRGGMRERFARLMQMNQLLNLDVPTDIVDVFGGPLSKLTSEEALNVMKLRVDWEETEIGRAQQHLL-TASSG 520
            MD LALVIQHTESYDRF+R++AAE            I E+G +      VLPA TDLNGA+AEV+GPFA+LE ++MR+SI KAL+IDELP LAPL+  Q G  L  SG   A  A  G  +++     + TG G +P TSS VDD+FYV+RRCARRALVTGHAGTASAI+NYIN  L DELM VLSAKVRSLRE+PLP+GL PA  +  AP          AG A+VA KQHWS+VK G  AGLETAQQLTA AAGSLMGG AG+GL GGG G +T YP  EAK ALDRLVMLNNL+ACA YT+KLQQELMAEVPSIFQDDP T QLM CL +MS T++ FEQ  +EGLQHV ALIKPK+R FLQDALGV    G G     G+GG RG  +V   L +  F +                     + + L              Y+ KRLEYLLMR  FTQLG LQ DKDLRCL+AFFPS    G     G++ GR  +R+ FARLMQM+ LLNLDVPTDIVDVFGG   KLT EEALN+M+LR DWEE EI +AQ+HLL T S+G
Sbjct:  416 MDALALVIQHTESYDRFLRHVAAE------------ILETGRDLGAP--VLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPALAPLSLVQAGTSLVASG---AGIASIGEGDDL----LLSTGRGDSPLTSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKVRSLRELPLPIGLLPAASSLGAP---------VAGTAVVAVKQHWSKVKEGIGAGLETAQQLTA-AAGSLMGGAAGVGLGGGGLGAVTCYPYEEAKNALDRLVMLNNLSACARYTLKLQQELMAEVPSIFQDDPPTQQLMACLQDMSVTAKHFEQTVDEGLQHVAALIKPKLRSFLQDALGVAQAVGKGQGGDAGQGGARGGSKVSYELDEDEFAANEAADPFMNRFLEFLGGLLGPISLRLTGRNFSVLKMSVVAYMAKRLEYLLMRLPFTQLGALQLDKDLRCLIAFFPSSTGYGDYSETGQESGR--VRDCFARLMQMSHLLNLDVPTDIVDVFGGNSMKLTVEEALNIMRLRTDWEEVEICKAQEHLLMTLSNG 948
The following BLAST results are available for this feature:
BLAST of NO12G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25751.19.500e-15158.83Conserved oligomeric Golgi complex, subunit 4 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02810NO12G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02810.1NO12G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02810.1.cds1NO12G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02810.1.cds2NO12G02810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp
ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT
CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA
GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC
TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC
GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC
TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC
GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG
AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG
CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG
TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT
TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA
GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC
CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG
CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG
TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT
GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG
AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT
TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG
ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA
TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA
CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG
GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT
ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA
GAGTAAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGATGGCG
CTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAAAATC
CTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGTTTGT
TGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGGGAGG
GGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTT
GAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGA
GCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGAT
TGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGGCCTC
GTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAGATAG
CAAAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAATTGGA
TGATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCACTTA
CTATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAAATCC
ACGGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGCACGG
CAAAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAGAACA
CAACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATCGTCC
TGAAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACCACAC
AACAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACCAACG
CGACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCCTCCA
CCAAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGCCTCG
ATATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGTCCCC
AGGCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGCCGTC
AGTCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAATGAA
ACAATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATATGACG
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protein sequence of NO12G02810.1

>NO12G02810.1-protein ID=NO12G02810.1-protein|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MDELALVIQHTESYDRFVRYLAAEAKKTRSSSSSSSIQESGTEENKEMVV
LPAATDLNGAIAEVSGPFAVLEHHLMRSSIHKALEIDELPPLAPLTCHQG
GLQGSGIAAASAAGSGREEEVYGPGAVGTGSGGAPQTSSCVDDTFYVVRR
CARRALVTGHAGTASAIVNYINSTLLDELMPVLSAKVRSLREMPLPVGLN
PATGNAAAPSNSSGGGGRKAGAAIVAAKQHWSRVKGGFEAGLETAQQLTA
VAAGSLMGGAGIGLVGGGAGTITYYPATEAKLALDRLVMLNNLAACAVYT
IKLQQELMAEVPSIFQDDPSTDQLMVCLGEMSETSRQFEQACEEGLQHVG
ALIKPKIRGFLQDALGVQSHEGGGGEGGGRGWGRVRQRLSDQGFESLKMA
LVDYLVKRLEYLLMRKSFTQLGGLQFDKDLRCLLAFFPSGGEDGGRKGGR
GGMRERFARLMQMNQLLNLDVPTDIVDVFGGPLSKLTSEEALNVMKLRVD
WEETEIGRAQQHLLTASSGAGGTGDGGFL*
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mRNA from alignment at chr12:785153..787552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp|location=Sequence derived from alignment at chr12:785153..787552- (Nannochloropsis oceanica)
ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT
CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA
GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC
TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC
GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC
TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC
GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG
AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG
CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG
TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT
TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA
GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC
CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG
CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG
TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT
GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG
AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT
TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG
ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA
TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA
CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG
GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT
ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA
GAGTAAGGTGTCTTATGAGTTGAACGAGGAGGACTTTGCCGGCAATGAAG
CGGTGGATCCATGGGTCCATCGCTTCGTGGAGTTTTTGGGGGGCGTACTG
GGACCTATTAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGAT
GGCGCTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAA
AATCCTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGT
TTGTTGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGG
GAGGGGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGC
TGTTGAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCT
TTGAGCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGT
GGATTGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGG
CCTCGTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAG
ATAGCAAAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAAT
TGGATGATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCA
CTTACTATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAA
ATCCACGGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGC
ACGGCAAAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAG
AACACAACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATC
GTCCTGAAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACC
ACACAACAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACC
AACGCGACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCC
TCCACCAAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGC
CTCGATATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGT
CCCCAGGCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGC
CGTCAGTCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAA
TGAAACAATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATATGACG
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Coding sequence (CDS) from alignment at chr12:785153..787552-

>NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr12:785153..787552- (Nannochloropsis oceanica)
ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT
CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA
GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC
TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC
GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC
TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC
GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG
AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG
CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG
TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT
TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA
GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC
CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG
CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG
TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT
GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG
AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT
TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG
ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA
TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA
CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG
GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT
ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA
GAGTAAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGATGGCG
CTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAAAATC
CTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGTTTGT
TGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGGGAGG
GGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTT
GAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGA
GCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGAT
TGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGGCCTC
GTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAG
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Synonyms
Publications