NO12G02800.2, NO12G02800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02800.2
Unique NameNO12G02800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2533
Alignment locationchr12:782321..785129 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:782321..785129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02800.2 vs.
Match: EWM25754.1 (fatty-acyl elongase [Nannochloropsis gaditana])

HSP 1 Score: 394.8 bits (1013), Expect = 1.900e-106
Identity = 193/234 (82.48%), Postives = 212/234 (90.60%), Query Frame = 0
Query:    1 MIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTHTFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFLHWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPKWLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYASYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRK 235
            MI+FLP IMK RP+K+LS PLA WN FLAVYSTIGA+RVVPHLLWF+STHTFK+TVCTAPY INGDGATGLWVTLFTLSKV EL+D+L+ICLKG++PIFLHWYHHVSVLYFTWAAHEAAH GMYFI MNYTVHSVMY+YYFLMAIKAKPKWLNPIYITFMQIAQM+VGVII+ FGFYYSS DA+CAVDPFVLK+S VIYASYLYLFM+FMIKRFFV     AG + K  AS +K
Sbjct:   86 MIIFLPMIMKKRPLKNLSTPLACWNLFLAVYSTIGAVRVVPHLLWFMSTHTFKQTVCTAPYYINGDGATGLWVTLFTLSKVAELIDSLWICLKGRRPIFLHWYHHVSVLYFTWAAHEAAHPGMYFIAMNYTVHSVMYTYYFLMAIKAKPKWLNPIYITFMQIAQMLVGVIISCFGFYYSSMDASCAVDPFVLKVSAVIYASYLYLFMQFMIKRFFVKNAR-AGQEGKVAASAKK 318          
The following BLAST results are available for this feature:
BLAST of NO12G02800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25754.11.900e-10682.48fatty-acyl elongase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02800NO12G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02800.2NO12G02800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02800.2.cds1NO12G02800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02800.2.cds2NO12G02800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02800.2.cds3NO12G02800.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=2533bp
CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG
TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA
AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC
CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT
TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA
ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT
TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC
CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC
ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT
ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA
ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG
CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA
CTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGGAGGAGAGAGAGGAT
ATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGTCTCATGGGTGGGTG
TGCCTCAATTGAGTAGGACAGTACTCAATCAATCATTCTCAGAGCATATC
ATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAAGGCAGAAGAAGAAT
CAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTGGTCCTTTCTCTTTT
CCTCCTTCCGATCTCTACCCTCACTCACGCTATCCACCCACACGACTCCC
ACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTA
TGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCT
CAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATG
ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG
CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG
GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT
TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC
CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG
TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT
TGGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGGC
TGCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACTCGG
TTATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTGG
CTCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGG
CGTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTT
GTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCT
TACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGG
CGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGG
CCAAGGCGAAGAAAGCGCTCTAAGCTTCAGGATTCTTGGGATCGGGGTTC
CCTATTAAGGGGAGATGGGCGTAGGCGTACGTGTGGATATATGGTGTGAG
GAGCAGTTGCGTGCATAATCGAGGAAGGAAAGTGATTGAGACCAGAGAGA
GGAACGACGAGTGGCTTTTTAAAAAATACGTCAGGCCAATAGGTAGCAAC
GACAGAATGTTTACATATGTGCAAAGCCCATGCATTTTGTATTGGATCTC
TAAACATCGAGAAGATGAGGATGGAGGAGATTTTTCCACTCTACTGCTTT
TGAAGGGGGGGAGGGGAGTTGAGTGTCCCTTGTCTTCCTGTAGATGCATG
CAACAGGCATGCATGTACACAAATAAGGAGAGTAGATATAGAGAGAGGGT
TGGGGAGAAAGAGGAGATGTGGAGAATGGAATGGGGAGAGAGGGATGGCG
GAGACATGAAGAGAAAGAGATGTCAACAATTTAGTCAACAACAGATAATG
AGGACAAAAATAACAACGACGACAACAACAAGAATGACCGAATATGGGAA
TATCCGCAATGCCAAGAATGTAATATGAATTCTCCTCTATGGAGAGAATG
TGAAGGGAGGGAGAAGGTGTGTAGTGTTCCTGAGCCCGATAAGTGTCAAC
ATCTGATTTTTTCCGGAATTTACTACCGCACATGTCAATTTAAGGCGATT
CGTTTGACAGGATTAAGAACAAGATAGGCGTGAAGGCACGTAGGAGCCAG
AGTGATGAATCATAATGTTATCAGTTCGCATAC
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protein sequence of NO12G02800.2

>NO12G02800.2-protein ID=NO12G02800.2-protein|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTH
TFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFL
HWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPK
WLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYA
SYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRKAKAKKAL*
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mRNA from alignment at chr12:782321..785129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=2809bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica)
CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA CTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGGAGGAGAGAGAGGAT ATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGTCTCATGGGTGGGTG TGCCTCAATTGAGTAGGACAGTACTCAATCAATCATTCTCAGAGCATATC ATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAAGGCAGAAGAAGAAT CAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTGGTCCTTTCTCTTTT CCTCCTTCCGATCTCTACCCTCACTCACGCTATCCACCCACACGACTCCC ACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTA TGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCT CAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATG ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT TGGTACGTGCTTTAGGTGGGAAGGGGATACGAGGGACAGGAGCAAGGAAT GTGAGAGAAGGCGTAAAAAGACGCACGTGCTCACAATTTTCTTCTCAATG CATATGCATACCTTTCTATTGTCAATAGGTATCATCATGTTTCCGTCCTC TACTTCACGTGGGCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCAT CGGCATGAACTACACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCA TGGCCATCAAGGCTAAGCCCAAGTGGCTCAAGTAAGTACCTCCCGCCCGT TACTTTTTTAATTCCATCTCCCCTCTTTCCTCCCTTTTTTCTTCGCTAAT CGGCAACGCGGACTTGAATCTCGCATCTTGTGCATCCAATCCAGACACCA ATTCCTCCCTTCCTCCCTCCCTCAATTCTAGCCCGATCTACATCACCTTC ATGCAAATTGCGCAAATGATCGTGGGCGTCATCATCACCGCCTTTGGATT TTACTACTCCTCCAAGGATGCTACTTGTGCGGTTGACCCGTTCGTGCTGA AGATCTCGGGAGTAATTTATGCGTCTTACCTTTACTTGTTCATGGAGTTT ATGATTAAGCGCTTTTTCGTTGGTGGCGGAGGGGTGGCCGGTGGGAAGAA GAAGGGAGGTGCCTCTCCCCGAAAGGCCAAGGCGAAGAAAGCGCTCTAAG CTTCAGGATTCTTGGGATCGGGGTTCCCTATTAAGGGGAGATGGGCGTAG GCGTACGTGTGGATATATGGTGTGAGGAGCAGTTGCGTGCATAATCGAGG AAGGAAAGTGATTGAGACCAGAGAGAGGAACGACGAGTGGCTTTTTAAAA AATACGTCAGGCCAATAGGTAGCAACGACAGAATGTTTACATATGTGCAA AGCCCATGCATTTTGTATTGGATCTCTAAACATCGAGAAGATGAGGATGG AGGAGATTTTTCCACTCTACTGCTTTTGAAGGGGGGGAGGGGAGTTGAGT GTCCCTTGTCTTCCTGTAGATGCATGCAACAGGCATGCATGTACACAAAT AAGGAGAGTAGATATAGAGAGAGGGTTGGGGAGAAAGAGGAGATGTGGAG AATGGAATGGGGAGAGAGGGATGGCGGAGACATGAAGAGAAAGAGATGTC AACAATTTAGTCAACAACAGATAATGAGGACAAAAATAACAACGACGACA ACAACAAGAATGACCGAATATGGGAATATCCGCAATGCCAAGAATGTAAT ATGAATTCTCCTCTATGGAGAGAATGTGAAGGGAGGGAGAAGGTGTGTAG TGTTCCTGAGCCCGATAAGTGTCAACATCTGATTTTTTCCGGAATTTACT ACCGCACATGTCAATTTAAGGCGATTCGTTTGACAGGATTAAGAACAAGA TAGGCGTGAAGGCACGTAGGAGCCAGAGTGATGAATCATAATGTTATCAG TTCGCATAC
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Coding sequence (CDS) from alignment at chr12:782321..785129-

>NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica)
ATGATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTT
GAGCAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCA
TCGGGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCAT
ACTTTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGG
CGCCACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGT
TGGTGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTG
CATTGGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGA
GGCTGCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACT
CGGTTATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAG
TGGCTCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGT
GGGCGTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTA
CTTGTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCG
TCTTACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGG
TGGCGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAA
AGGCCAAGGCGAAGAAAGCGCTCTAA
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Synonyms
Publications