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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:782321..785129 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02800.2 vs.
Match: EWM25754.1 (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 394.8 bits (1013), Expect = 1.900e-106 Identity = 193/234 (82.48%), Postives = 212/234 (90.60%), Query Frame = 0
Query: 1 MIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTHTFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFLHWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPKWLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYASYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRK 235
MI+FLP IMK RP+K+LS PLA WN FLAVYSTIGA+RVVPHLLWF+STHTFK+TVCTAPY INGDGATGLWVTLFTLSKV EL+D+L+ICLKG++PIFLHWYHHVSVLYFTWAAHEAAH GMYFI MNYTVHSVMY+YYFLMAIKAKPKWLNPIYITFMQIAQM+VGVII+ FGFYYSS DA+CAVDPFVLK+S VIYASYLYLFM+FMIKRFFV AG + K AS +K
Sbjct: 86 MIIFLPMIMKKRPLKNLSTPLACWNLFLAVYSTIGAVRVVPHLLWFMSTHTFKQTVCTAPYYINGDGATGLWVTLFTLSKVAELIDSLWICLKGRRPIFLHWYHHVSVLYFTWAAHEAAHPGMYFIAMNYTVHSVMYTYYFLMAIKAKPKWLNPIYITFMQIAQMLVGVIISCFGFYYSSMDASCAVDPFVLKVSAVIYASYLYLFMQFMIKRFFVKNAR-AGQEGKVAASAKK 318
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=2533bp CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA CTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGGAGGAGAGAGAGGAT ATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGTCTCATGGGTGGGTG TGCCTCAATTGAGTAGGACAGTACTCAATCAATCATTCTCAGAGCATATC ATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAAGGCAGAAGAAGAAT CAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTGGTCCTTTCTCTTTT CCTCCTTCCGATCTCTACCCTCACTCACGCTATCCACCCACACGACTCCC ACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTA TGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCT CAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATG ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT TGGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGGC TGCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACTCGG TTATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTGG CTCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGG CGTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTT GTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCT TACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGG CGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGG CCAAGGCGAAGAAAGCGCTCTAAGCTTCAGGATTCTTGGGATCGGGGTTC CCTATTAAGGGGAGATGGGCGTAGGCGTACGTGTGGATATATGGTGTGAG GAGCAGTTGCGTGCATAATCGAGGAAGGAAAGTGATTGAGACCAGAGAGA GGAACGACGAGTGGCTTTTTAAAAAATACGTCAGGCCAATAGGTAGCAAC GACAGAATGTTTACATATGTGCAAAGCCCATGCATTTTGTATTGGATCTC TAAACATCGAGAAGATGAGGATGGAGGAGATTTTTCCACTCTACTGCTTT TGAAGGGGGGGAGGGGAGTTGAGTGTCCCTTGTCTTCCTGTAGATGCATG CAACAGGCATGCATGTACACAAATAAGGAGAGTAGATATAGAGAGAGGGT TGGGGAGAAAGAGGAGATGTGGAGAATGGAATGGGGAGAGAGGGATGGCG GAGACATGAAGAGAAAGAGATGTCAACAATTTAGTCAACAACAGATAATG AGGACAAAAATAACAACGACGACAACAACAAGAATGACCGAATATGGGAA TATCCGCAATGCCAAGAATGTAATATGAATTCTCCTCTATGGAGAGAATG TGAAGGGAGGGAGAAGGTGTGTAGTGTTCCTGAGCCCGATAAGTGTCAAC ATCTGATTTTTTCCGGAATTTACTACCGCACATGTCAATTTAAGGCGATT CGTTTGACAGGATTAAGAACAAGATAGGCGTGAAGGCACGTAGGAGCCAG AGTGATGAATCATAATGTTATCAGTTCGCATAC back to topprotein sequence of NO12G02800.2 >NO12G02800.2-protein ID=NO12G02800.2-protein|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp MIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTH TFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFL HWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPK WLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYA SYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRKAKAKKAL* back to topmRNA from alignment at chr12:782321..785129- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=2809bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica) CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG
TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA
AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC
CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT
TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA
ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT
TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC
CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC
ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT
ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA
ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG
CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA
CTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGGAGGAGAGAGAGGAT
ATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGTCTCATGGGTGGGTG
TGCCTCAATTGAGTAGGACAGTACTCAATCAATCATTCTCAGAGCATATC
ATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAAGGCAGAAGAAGAAT
CAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTGGTCCTTTCTCTTTT
CCTCCTTCCGATCTCTACCCTCACTCACGCTATCCACCCACACGACTCCC
ACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTA
TGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCT
CAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATG
ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG
CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG
GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT
TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC
CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG
TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT
TGGTACGTGCTTTAGGTGGGAAGGGGATACGAGGGACAGGAGCAAGGAAT
GTGAGAGAAGGCGTAAAAAGACGCACGTGCTCACAATTTTCTTCTCAATG
CATATGCATACCTTTCTATTGTCAATAGGTATCATCATGTTTCCGTCCTC
TACTTCACGTGGGCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCAT
CGGCATGAACTACACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCA
TGGCCATCAAGGCTAAGCCCAAGTGGCTCAAGTAAGTACCTCCCGCCCGT
TACTTTTTTAATTCCATCTCCCCTCTTTCCTCCCTTTTTTCTTCGCTAAT
CGGCAACGCGGACTTGAATCTCGCATCTTGTGCATCCAATCCAGACACCA
ATTCCTCCCTTCCTCCCTCCCTCAATTCTAGCCCGATCTACATCACCTTC
ATGCAAATTGCGCAAATGATCGTGGGCGTCATCATCACCGCCTTTGGATT
TTACTACTCCTCCAAGGATGCTACTTGTGCGGTTGACCCGTTCGTGCTGA
AGATCTCGGGAGTAATTTATGCGTCTTACCTTTACTTGTTCATGGAGTTT
ATGATTAAGCGCTTTTTCGTTGGTGGCGGAGGGGTGGCCGGTGGGAAGAA
GAAGGGAGGTGCCTCTCCCCGAAAGGCCAAGGCGAAGAAAGCGCTCTAAG
CTTCAGGATTCTTGGGATCGGGGTTCCCTATTAAGGGGAGATGGGCGTAG
GCGTACGTGTGGATATATGGTGTGAGGAGCAGTTGCGTGCATAATCGAGG
AAGGAAAGTGATTGAGACCAGAGAGAGGAACGACGAGTGGCTTTTTAAAA
AATACGTCAGGCCAATAGGTAGCAACGACAGAATGTTTACATATGTGCAA
AGCCCATGCATTTTGTATTGGATCTCTAAACATCGAGAAGATGAGGATGG
AGGAGATTTTTCCACTCTACTGCTTTTGAAGGGGGGGAGGGGAGTTGAGT
GTCCCTTGTCTTCCTGTAGATGCATGCAACAGGCATGCATGTACACAAAT
AAGGAGAGTAGATATAGAGAGAGGGTTGGGGAGAAAGAGGAGATGTGGAG
AATGGAATGGGGAGAGAGGGATGGCGGAGACATGAAGAGAAAGAGATGTC
AACAATTTAGTCAACAACAGATAATGAGGACAAAAATAACAACGACGACA
ACAACAAGAATGACCGAATATGGGAATATCCGCAATGCCAAGAATGTAAT
ATGAATTCTCCTCTATGGAGAGAATGTGAAGGGAGGGAGAAGGTGTGTAG
TGTTCCTGAGCCCGATAAGTGTCAACATCTGATTTTTTCCGGAATTTACT
ACCGCACATGTCAATTTAAGGCGATTCGTTTGACAGGATTAAGAACAAGA
TAGGCGTGAAGGCACGTAGGAGCCAGAGTGATGAATCATAATGTTATCAG
TTCGCATAC back to topCoding sequence (CDS) from alignment at chr12:782321..785129- >NO12G02800.2 ID=NO12G02800.2|Name=NO12G02800.2|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica) ATGATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTT GAGCAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCA TCGGGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCAT ACTTTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGG CGCCACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGT TGGTGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTG CATTGGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGA GGCTGCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACT CGGTTATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAG TGGCTCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGT GGGCGTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTA CTTGTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCG TCTTACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGG TGGCGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAA AGGCCAAGGCGAAGAAAGCGCTCTAA back to top
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