NO12G02680.1, NO12G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02680.1
Unique NameNO12G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr12:754279..754788 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:754279..754788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02680.1 vs.
Match: EWM25761.1 (Ribosomal protein L32p [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 2.600e-33
Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 0
Query:    1 MALQQLAVQLRRQSGAWARDMRVIVPATLSLLRPPVVISENLRVPTQQTTYNLGLA-WEGMPPIEKEQEDEMQLEERREEEAGSEGFWDGLLRMAVPKKKVSHRRRRRKLVHYDCENIVHAYPCPACGKPKLRHRLCDDYEKCAAQMPAKYQRPGEA----SAAAAAGGEENHA 170
            MA+Q+L   L+R+   W R+M  +VP  L L++ P ++      P  Q T+ L L+   G+ P+E   +DE+  E R  E+ G   + +  LRMAVPKKKVSHRR+RRKLV YDCENIVH Y CPACGKPKLRHRLCDDYE+CAAQ P+KY+RP       +  A   GE N+A
Sbjct:    1 MAIQRLWGHLQREGRKWVREMLSVVPPPLRLVQHPSLVQG--LYPATQPTFPLELSDGYGIIPLE---QDEVGFE-RGSEDLGRSLWEEAFLRMAVPKKKVSHRRQRRKLVRYDCENIVHTYTCPACGKPKLRHRLCDDYERCAAQQPSKYRRPTTGREGPTGRATEAGEGNNA 168          
The following BLAST results are available for this feature:
BLAST of NO12G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25761.12.600e-3350.57Ribosomal protein L32p [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02680NO12G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02680.1NO12G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02680.1.cds1NO12G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02680.1 ID=NO12G02680.1|Name=NO12G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTG
GGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGC
CGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACG
TACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCA
AGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGG
AGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTC
TCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATAT
TGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATC
GATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTAC
CAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAA
TCATGCGTAG
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protein sequence of NO12G02680.1

>NO12G02680.1-protein ID=NO12G02680.1-protein|Name=NO12G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MALQQLAVQLRRQSGAWARDMRVIVPATLSLLRPPVVISENLRVPTQQTT
YNLGLAWEGMPPIEKEQEDEMQLEERREEEAGSEGFWDGLLRMAVPKKKV
SHRRRRRKLVHYDCENIVHAYPCPACGKPKLRHRLCDDYEKCAAQMPAKY
QRPGEASAAAAAGGEENHA*
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mRNA from alignment at chr12:754279..754788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02680.1 ID=NO12G02680.1|Name=NO12G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at chr12:754279..754788+ (Nannochloropsis oceanica)
ATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTG GGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGC CGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACG TACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCA AGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGG AGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTC TCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATAT TGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATC GATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTAC CAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAA TCATGCGTAG
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Coding sequence (CDS) from alignment at chr12:754279..754788+

>NO12G02680.1 ID=NO12G02680.1|Name=NO12G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr12:754279..754788+ (Nannochloropsis oceanica)
ATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTG
GGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGC
CGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACG
TACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCA
AGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGG
AGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTC
TCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATAT
TGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATC
GATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTAC
CAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAA
TCATGCGTAG
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Synonyms
Publications