NO12G02670.1, NO12G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02670.1
Unique NameNO12G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr12:751953..753816 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:751953..753816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02670.1 vs.
Match: EWM25768.1 (ham group protein [Nannochloropsis gaditana])

HSP 1 Score: 766.9 bits (1979), Expect = 4.000e-218
Identity = 399/531 (75.14%), Postives = 440/531 (82.86%), Query Frame = 0 
Query:    3 GVAKAWPRAKILDTAKDMSPVANGSYYHVLWRDGKQINLAEVIESRPARIPLEDSATTKKPA-GKKRGRPCKTEVSSEVEADDEDRAGHKREAAAAAAAPQAATEDESQKNASDFDYYVHYCGYDRRLDEWVAVDRIDVVSGLQPPPAVNGHGHSH---HHHHRQAQSASSSALAATKPDGKQN--GAVGGRKRKLEDGGGGGGGGGGATEELTGESGALVGTGRGRGRVSKAELSQAAVEKEHEEITKVKNIQFIEMGKYEVETWYYSPFPSEYCDTERLYVCEFCLKYMKKKKTLQRHKAKCDLRHPPGDEIYREGNLSVFEVDGKLNKIYSQNLCLLAKLFLDHKTLYYDVDPFLFYVLCESDEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGKFLISLSYELTKLEHKVGSPEKPLSDLGKLSYRSYWSMVLLSILREAPSASIKDLSQRSGIKVEDIISTLQCLNMIKHFKGQHVIVVNKHEVKAHLEGMKKMRLAKPDCLSWQGPGGGGLLGTKQQKK 528
            G  +AWPR KILD AKD+ P+ NGS+ +VLWRDGKQ+NLAEVIE RP+RI + DS T K+ + G KRGR   ++V S VE   E   G K+E              +  K+ASDFDYYVHYCGYDRRLDEWVAVDRID+VSG+QP P  NGH H+H   HHHH  A     SA AA +P+G +N   +   RKRK E+G G   G G A EE  GE G   G GRGRGRVSKAE+SQAAVE+EHEEITKVKN+QFIEMG+YE+ETWYYSPFP+EYCDTERLYVCEFCLKYMK++KT QRH+AKCDLRHPPGDEIYREG+LSVFEVDGKLNKIY QNLCLLAKLFLDHKTLYYDVDPFLFYVLCESDEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGKFLISLSYELTKLEHKVGSPEKPLSDLGKLSYRSYW MVLLSIL E PS +IKDLSQRSGIKVEDIISTLQCL+MIK+FKGQHVI+VN+ E+KAHLEGMK+MRLAKP+CLSWQGPGG G LG KQQKK
Sbjct:    2 GTNRAWPRGKILDLAKDLPPLVNGSHVYVLWRDGKQVNLAEVIERRPSRILVHDSNTRKRGSNGLKRGR---SKVESGVEMKVESEDGIKKEELG-----------DDSKHASDFDYYVHYCGYDRRLDEWVAVDRIDLVSGVQPTPQTNGH-HTHGLGHHHHHHATGLVPSASAAGQPEGTRNKGSSASSRKRKPEEGAGESAGTGVA-EEQVGEGGLWPGPGRGRGRVSKAEMSQAAVEQEHEEITKVKNVQFIEMGRYEIETWYYSPFPAEYCDTERLYVCEFCLKYMKRRKTQQRHRAKCDLRHPPGDEIYREGDLSVFEVDGKLNKIYCQNLCLLAKLFLDHKTLYYDVDPFLFYVLCESDEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGKFLISLSYELTKLEHKVGSPEKPLSDLGKLSYRSYWLMVLLSILIEVPSTTIKDLSQRSGIKVEDIISTLQCLSMIKYFKGQHVIIVNRQEMKAHLEGMKRMRLAKPECLSWQGPGGAG-LGAKQQKK 515
The following BLAST results are available for this feature:
BLAST of NO12G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25768.14.000e-21875.14ham group protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02670NO12G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02670.1NO12G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02670.1.cds1NO12G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02670.1.cds2NO12G02670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02670.1 ID=NO12G02670.1|Name=NO12G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGACGGGAGTAGCAAAGGCATGGCCACGAGCCAAGATCCTAGACACGGC
CAAGGACATGTCTCCTGTCGCAAATGGCTCTTATTACCATGTATTGTGGC
GTGATGGGAAGCAAATAAATCTGGCCGAAGTTATCGAAAGCCGACCCGCG
CGCATCCCCCTTGAGGACAGCGCCACCACTAAGAAACCCGCTGGCAAAAA
ACGTGGCCGACCTTGCAAGACAGAGGTTTCCTCAGAGGTTGAGGCGGATG
ATGAGGACAGGGCGGGGCACAAAAGGGAAGCAGCTGCAGCGGCAGCGGCG
CCACAAGCAGCGACTGAGGACGAGAGTCAGAAGAACGCCTCGGATTTTGA
TTATTACGTGCATTACTGCGGTTATGACCGGCGCTTGGACGAGTGGGTGG
CTGTGGATCGCATTGACGTCGTCAGTGGCTTGCAGCCCCCGCCGGCAGTG
AATGGTCATGGGCACAGCCATCACCACCACCATCGCCAAGCTCAAAGCGC
TTCCTCTTCCGCCCTGGCAGCAACGAAGCCCGATGGTAAACAAAATGGGG
CAGTAGGCGGGCGCAAGCGTAAGTTGGAGGATGGTGGTGGCGGTGGTGGA
GGAGGGGGTGGGGCCACGGAGGAATTGACGGGGGAGTCGGGCGCATTGGT
AGGGACGGGGCGGGGACGAGGGAGGGTGAGCAAGGCAGAGCTGAGTCAAG
CAGCAGTAGAGAAGGAGCACGAGGAGATCACCAAGGTGAAGAATATTCAG
TTCATCGAGATGGGGAAGTATGAAGTAGAGACGTGGTACTATTCACCGTT
TCCCTCCGAGTATTGTGATACGGAGCGATTATATGTGTGTGAATTTTGCC
TTAAGTATATGAAGAAGAAGAAGACCCTGCAGCGGCACAAGGCGAAGTGC
GACCTGCGGCACCCGCCAGGGGACGAGATCTATCGAGAGGGTAACTTGAG
TGTGTTTGAAGTGGATGGCAAATTGAACAAGATTTACAGCCAGAATCTTT
GTCTGCTCGCCAAGCTCTTCTTGGACCACAAGACGCTGTACTACGACGTG
GATCCCTTCCTCTTCTATGTCCTGTGTGAGTCGGACGAGAAGGGCTATCA
CGTGGTGGGCTACTTTTCCAAGGAGAAGAATTCATGTGAGAACTATAACT
TGGCCTGTATCCTGACTTTCCCCCCCTATCAACGCGCGGGGTATGGCAAG
TTTCTGATTTCCCTGTCGTATGAGCTGACGAAGTTGGAGCATAAGGTAGG
GTCGCCTGAGAAGCCGCTGTCGGATTTGGGCAAACTAAGTTACCGCTCTT
ACTGGTCAATGGTGTTGTTGAGTATCTTGAGGGAGGCACCTTCTGCCTCC
ATCAAGGATCTGAGCCAACGGTCGGGTATTAAAGTGGAGGACATTATCTC
AACATTGCAGTGCCTGAATATGATCAAGCACTTCAAAGGACAGCATGTGA
TTGTCGTGAATAAGCACGAGGTAAAGGCGCATCTAGAAGGTATGAAGAAG
ATGCGGTTGGCCAAGCCCGATTGCTTGTCTTGGCAGGGGCCGGGTGGAGG
GGGCTTGTTGGGCACGAAACAGCAAAAGAAGAATGCGTTGTGA
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protein sequence of NO12G02670.1

>NO12G02670.1-protein ID=NO12G02670.1-protein|Name=NO12G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MTGVAKAWPRAKILDTAKDMSPVANGSYYHVLWRDGKQINLAEVIESRPA
RIPLEDSATTKKPAGKKRGRPCKTEVSSEVEADDEDRAGHKREAAAAAAA
PQAATEDESQKNASDFDYYVHYCGYDRRLDEWVAVDRIDVVSGLQPPPAV
NGHGHSHHHHHRQAQSASSSALAATKPDGKQNGAVGGRKRKLEDGGGGGG
GGGGATEELTGESGALVGTGRGRGRVSKAELSQAAVEKEHEEITKVKNIQ
FIEMGKYEVETWYYSPFPSEYCDTERLYVCEFCLKYMKKKKTLQRHKAKC
DLRHPPGDEIYREGNLSVFEVDGKLNKIYSQNLCLLAKLFLDHKTLYYDV
DPFLFYVLCESDEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGK
FLISLSYELTKLEHKVGSPEKPLSDLGKLSYRSYWSMVLLSILREAPSAS
IKDLSQRSGIKVEDIISTLQCLNMIKHFKGQHVIVVNKHEVKAHLEGMKK
MRLAKPDCLSWQGPGGGGLLGTKQQKKNAL*
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mRNA from alignment at chr12:751953..753816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02670.1 ID=NO12G02670.1|Name=NO12G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at chr12:751953..753816+ (Nannochloropsis oceanica)
ATGACGGGAGTAGCAAAGGCATGGCCACGAGGTACGTGAAAGAACTGGGC
AATAGACTTTGAACGTTGAGCGAGGCCGAGGCCAAGGCGGCACAATAATG
ATGGTGATTGGTAGGCGGCGTGGATGATACCCAACATCCTTATTCCATAT
CGTTTTGTCAACTCGGCCAAGAGTAACGGCACGAGATGGATCCTCATGAA
GGCGGGGGCCTCCTTGATTAGTAGTTTTGCGGGCTGCACGGTTGTATATC
TCCCCCCTCCTCTCACCCATCTCGTCACCCCTCCTCCTCCTCGTCTTCAC
AGCCAAGATCCTAGACACGGCCAAGGACATGTCTCCTGTCGCAAATGGCT
CTTATTACCATGTATTGTGGCGTGATGGGAAGCAAATAAATCTGGCCGAA
GTTATCGAAAGCCGACCCGCGCGCATCCCCCTTGAGGACAGCGCCACCAC
TAAGAAACCCGCTGGCAAAAAACGTGGCCGACCTTGCAAGACAGAGGTTT
CCTCAGAGGTTGAGGCGGATGATGAGGACAGGGCGGGGCACAAAAGGGAA
GCAGCTGCAGCGGCAGCGGCGCCACAAGCAGCGACTGAGGACGAGAGTCA
GAAGAACGCCTCGGATTTTGATTATTACGTGCATTACTGCGGTTATGACC
GGCGCTTGGACGAGTGGGTGGCTGTGGATCGCATTGACGTCGTCAGTGGC
TTGCAGCCCCCGCCGGCAGTGAATGGTCATGGGCACAGCCATCACCACCA
CCATCGCCAAGCTCAAAGCGCTTCCTCTTCCGCCCTGGCAGCAACGAAGC
CCGATGGTAAACAAAATGGGGCAGTAGGCGGGCGCAAGCGTAAGTTGGAG
GATGGTGGTGGCGGTGGTGGAGGAGGGGGTGGGGCCACGGAGGAATTGAC
GGGGGAGTCGGGCGCATTGGTAGGGACGGGGCGGGGACGAGGGAGGGTGA
GCAAGGCAGAGCTGAGTCAAGCAGCAGTAGAGAAGGAGCACGAGGAGATC
ACCAAGGTGAAGAATATTCAGTTCATCGAGATGGGGAAGTATGAAGTAGA
GACGTGGTACTATTCACCGTTTCCCTCCGAGTATTGTGATACGGAGCGAT
TATATGTGTGTGAATTTTGCCTTAAGTATATGAAGAAGAAGAAGACCCTG
CAGCGGCACAAGGCGAAGTGCGACCTGCGGCACCCGCCAGGGGACGAGAT
CTATCGAGAGGGTAACTTGAGTGTGTTTGAAGTGGATGGCAAATTGAACA
AGATTTACAGCCAGAATCTTTGTCTGCTCGCCAAGCTCTTCTTGGACCAC
AAGACGCTGTACTACGACGTGGATCCCTTCCTCTTCTATGTCCTGTGTGA
GTCGGACGAGAAGGGCTATCACGTGGTGGGCTACTTTTCCAAGGAGAAGA
ATTCATGTGAGAACTATAACTTGGCCTGTATCCTGACTTTCCCCCCCTAT
CAACGCGCGGGGTATGGCAAGTTTCTGATTTCCCTGTCGTATGAGCTGAC
GAAGTTGGAGCATAAGGTAGGGTCGCCTGAGAAGCCGCTGTCGGATTTGG
GCAAACTAAGTTACCGCTCTTACTGGTCAATGGTGTTGTTGAGTATCTTG
AGGGAGGCACCTTCTGCCTCCATCAAGGATCTGAGCCAACGGTCGGGTAT
TAAAGTGGAGGACATTATCTCAACATTGCAGTGCCTGAATATGATCAAGC
ACTTCAAAGGACAGCATGTGATTGTCGTGAATAAGCACGAGGTAAAGGCG
CATCTAGAAGGTATGAAGAAGATGCGGTTGGCCAAGCCCGATTGCTTGTC
TTGGCAGGGGCCGGGTGGAGGGGGCTTGTTGGGCACGAAACAGCAAAAGA
AGAATGCGTTGTGA
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Coding sequence (CDS) from alignment at chr12:751953..753816+

>NO12G02670.1 ID=NO12G02670.1|Name=NO12G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr12:751953..753816+ (Nannochloropsis oceanica)
ATGACGGGAGTAGCAAAGGCATGGCCACGAGCCAAGATCCTAGACACGGC
CAAGGACATGTCTCCTGTCGCAAATGGCTCTTATTACCATGTATTGTGGC
GTGATGGGAAGCAAATAAATCTGGCCGAAGTTATCGAAAGCCGACCCGCG
CGCATCCCCCTTGAGGACAGCGCCACCACTAAGAAACCCGCTGGCAAAAA
ACGTGGCCGACCTTGCAAGACAGAGGTTTCCTCAGAGGTTGAGGCGGATG
ATGAGGACAGGGCGGGGCACAAAAGGGAAGCAGCTGCAGCGGCAGCGGCG
CCACAAGCAGCGACTGAGGACGAGAGTCAGAAGAACGCCTCGGATTTTGA
TTATTACGTGCATTACTGCGGTTATGACCGGCGCTTGGACGAGTGGGTGG
CTGTGGATCGCATTGACGTCGTCAGTGGCTTGCAGCCCCCGCCGGCAGTG
AATGGTCATGGGCACAGCCATCACCACCACCATCGCCAAGCTCAAAGCGC
TTCCTCTTCCGCCCTGGCAGCAACGAAGCCCGATGGTAAACAAAATGGGG
CAGTAGGCGGGCGCAAGCGTAAGTTGGAGGATGGTGGTGGCGGTGGTGGA
GGAGGGGGTGGGGCCACGGAGGAATTGACGGGGGAGTCGGGCGCATTGGT
AGGGACGGGGCGGGGACGAGGGAGGGTGAGCAAGGCAGAGCTGAGTCAAG
CAGCAGTAGAGAAGGAGCACGAGGAGATCACCAAGGTGAAGAATATTCAG
TTCATCGAGATGGGGAAGTATGAAGTAGAGACGTGGTACTATTCACCGTT
TCCCTCCGAGTATTGTGATACGGAGCGATTATATGTGTGTGAATTTTGCC
TTAAGTATATGAAGAAGAAGAAGACCCTGCAGCGGCACAAGGCGAAGTGC
GACCTGCGGCACCCGCCAGGGGACGAGATCTATCGAGAGGGTAACTTGAG
TGTGTTTGAAGTGGATGGCAAATTGAACAAGATTTACAGCCAGAATCTTT
GTCTGCTCGCCAAGCTCTTCTTGGACCACAAGACGCTGTACTACGACGTG
GATCCCTTCCTCTTCTATGTCCTGTGTGAGTCGGACGAGAAGGGCTATCA
CGTGGTGGGCTACTTTTCCAAGGAGAAGAATTCATGTGAGAACTATAACT
TGGCCTGTATCCTGACTTTCCCCCCCTATCAACGCGCGGGGTATGGCAAG
TTTCTGATTTCCCTGTCGTATGAGCTGACGAAGTTGGAGCATAAGGTAGG
GTCGCCTGAGAAGCCGCTGTCGGATTTGGGCAAACTAAGTTACCGCTCTT
ACTGGTCAATGGTGTTGTTGAGTATCTTGAGGGAGGCACCTTCTGCCTCC
ATCAAGGATCTGAGCCAACGGTCGGGTATTAAAGTGGAGGACATTATCTC
AACATTGCAGTGCCTGAATATGATCAAGCACTTCAAAGGACAGCATGTGA
TTGTCGTGAATAAGCACGAGGTAAAGGCGCATCTAGAAGGTATGAAGAAG
ATGCGGTTGGCCAAGCCCGATTGCTTGTCTTGGCAGGGGCCGGGTGGAGG
GGGCTTGTTGGGCACGAAACAGCAAAAGAAGAATGCGTTGTGA
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Synonyms
Publications