NO12G02600.1, NO12G02600.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02600.1
Unique Name	NO12G02600.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2472
Alignment location	chr12:738587..741058 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:738587..741058 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO12G02600.1 vs.

BLAST of NO12G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02600	NO12G02600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02600.1	NO12G02600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02600.1.cds1	NO12G02600.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:738587..741058-
coding sequence from alignment at chr12:738587..741058-

mRNA sequence

>NO12G02600.1 ID=NO12G02600.1|Name=NO12G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp
ATGTCTCGGGCTCACTTCCCCTATTCCCGCCTGTTGCCCCGTCTCGGTCA
GCTCACGACTCAACACCCCCCATTTTGTCCATACACACCTCAGCAGCAGC
TGCTCTGCCCGATGACCACACTCGATTATGTCACCGGTGCGGCAGGAACC
GAGGACAAAAAGATACAGGGCGTAGGAGACCCTCGCATCATCACCACTAG
CAGTGCTAGCAAGAGCCACCATCCGATTTCGCCCAGGAGCGCCTCCTCCT
TCCGTCCAGCATCGTCGTATGCCTCCTCCCCCTCCTCGTCCTCATCCGTC
TCCTCGAAACGAAGCAGTTCCAGCAGCAGCAAGCCCATTACCTATGGCAC
GTCGACTTTGCTGCCGCCATCTGTGCTCCCTCCCGAATACCTGCATGATA
TGCGGGAGACCATCCGGCAACGCCTGGAGGCCATGCCGGCAGATCGGGAA
ACTGACCTGGTGGCCTTTGCTGAATGGGTTTCCCTGTTCGTCGGGCGCAC
TCTGACTAGCCACCGAACAGGTCTGTTGCTGCCCCCCACGGTGGCCTCGT
CCAAGGCCATTTGCAGCAGCAGGGGGAAAAGTTGTGCAGCTGGCGATGAT
TCGGAGAAAACGGAGGAGCGTCGGCAACGGCGCAAGACGGAGACTGCGGC
AGCGGCGGCGGCGCAGCAAGACGATGAACACATGTTTGTAGTGGGACAGG
GCTATTCTCGTCCCGCGCCCAATTCGCCTTCGTCCTACTCCACTTCGTCT
GCCGAGAGCTGTGTTGACACCACCACTGTCGGCAGTGGGATGCACCCTGA
AAGTGAGCAGGGAGATGAGCAGCAGCAGCAGCAGCAGTCTGCCGTCGCGG
ATGTTGCAGTAGTCTCGGCCGGTGCAGTTACTGGTGCCGGCACATCCCCC
AGGCCGAAGGTTTCCGGCAACCCGAGCGACTTGGAACTCATATCCATTCT
TTTGGATTTCTCCAGTAAGGCCAAGGCCACAGCACCGCAACGAAAAGCCA
CGCCCATGCCCGGGTCCATCTCCTCTGACTCATCTTCTCCCTCCTCCATC
GTGTCGCCCAGAAAGACCAAGAAGAAAGCCAGCCCTCTGTTACCTATTCC
CTCCCGCCACGAAACGCCGCATCATTCCTCGGTGCTGCTAAACACAGCCG
CTCAAGCACCTGCCGTAATCCACAACAGTTCGGCCACCGGCCAGTCCTCC
CCTTCTCCTCTTCCCTCGACGACGGCAGATACGCATCAGTCCTCTCATGT
TAACATGTCGATGGCGCTGCACAAGCCGTCGATTCCTATGCCACTTCATT
CTTCGTCGTCTTTCTCTTCCCCTCCCTCTTCCTCCCCCTCACCCTCTTCC
TCGCTGTCTCTTCCGCTGCCAGATCAGAAGACGACAGGCGATGCCACATC
CCCTCATCCCTCCTCTCACCTTAAACAGCAACCCCAGTTCATGGCCTCAT
CCTCATCTTCATCCTCTCCTACTCTTCCTCCTCCGCCACCTCCCTCGTAC
GCCTACTTCATGCAAGCCGGCTGCTCCCGCGAAGGAATATCTGCCGGGAA
CTGGACTTACTTCCACGGTGCCGGACTAAAAGGCCAACCCCACACAAACC
TCTTCATGGGACAGCTACTCCGCATCTCCGGCGTGCCTTCCAAGACGCAA
ACAGTCGTGGCAGGCATCGTCCGGTACAACAAAGACACGACCTGCAACGC
CGCCCTAGTCTTGGACATAGCCGAAAGTGCCTTTATCCTCACGCCTATTG
CCCCGCTTCACGCTCTTCTCACCGGAAAGTACCTTGAAGAGGAGGCTCGC
TTGACCATCATGTCTAGACTTATCTCTCAATGGCTCAATTGTCCAGCCCG
GAAGAGTGAGGCCTGGTCTCCCTCTGCCGCTTCTTCTGCCTCTTACCCCA
CGCCGTCGACAGGGTCGATAGAATCCGAAGCATCAGCAGCATCCGCAACA
TCAGTAGGAGCTTCGGTCAGGAATATGAGAACAGGAAGGCCAAAGCCAGC
TATTGAGACTTCAGCCTTGTCCCCGATAGATGTGGCAGCAGGAGGAGTTG
GAGGAGGAGGAAGAGGAGGAACACCAGCAGCGGCAGCAGTGCCTTATCCC
CCCCTTCGAGCACCCTTCCCTCCGGGTCCGACTGATTTGGTCCCCCCTCC
CCATGCAGCGCCTAAGAAAGTCGTGCCCCCTCCTCCGTCCCCGCGGCCTT
TTGCAGTGGTCGTCCCTCACCCACAGCGCTTTTCCCACCATCAACACTTC
CCTCAGCACCAACAGCAGCAGCAGCAGCAGTATCCATTGTCTGCCCCTGT
CCATCATCAACTCCAGCAGCAGCAGCAGCAGCAGCACACCCATCGGCTGC
ATCCCCAGCACCAGCCCTACTCCCATTCGTCCTACATGCATCAACAGCAG
AGTGTGTTCCAGCAGCAGCAGCAGCAGCAACAACAACAACGGCAGCAGCA
CGCTCCTCTCGCGCGCGCTTAA

protein sequence of NO12G02600.1

>NO12G02600.1-protein ID=NO12G02600.1-protein|Name=NO12G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=824bp
MSRAHFPYSRLLPRLGQLTTQHPPFCPYTPQQQLLCPMTTLDYVTGAAGT
EDKKIQGVGDPRIITTSSASKSHHPISPRSASSFRPASSYASSPSSSSSV
SSKRSSSSSSKPITYGTSTLLPPSVLPPEYLHDMRETIRQRLEAMPADRE
TDLVAFAEWVSLFVGRTLTSHRTGLLLPPTVASSKAICSSRGKSCAAGDD
SEKTEERRQRRKTETAAAAAAQQDDEHMFVVGQGYSRPAPNSPSSYSTSS
AESCVDTTTVGSGMHPESEQGDEQQQQQQSAVADVAVVSAGAVTGAGTSP
RPKVSGNPSDLELISILLDFSSKAKATAPQRKATPMPGSISSDSSSPSSI
VSPRKTKKKASPLLPIPSRHETPHHSSVLLNTAAQAPAVIHNSSATGQSS
PSPLPSTTADTHQSSHVNMSMALHKPSIPMPLHSSSSFSSPPSSSPSPSS
SLSLPLPDQKTTGDATSPHPSSHLKQQPQFMASSSSSSSPTLPPPPPPSY
AYFMQAGCSREGISAGNWTYFHGAGLKGQPHTNLFMGQLLRISGVPSKTQ
TVVAGIVRYNKDTTCNAALVLDIAESAFILTPIAPLHALLTGKYLEEEAR
LTIMSRLISQWLNCPARKSEAWSPSAASSASYPTPSTGSIESEASAASAT
SVGASVRNMRTGRPKPAIETSALSPIDVAAGGVGGGGRGGTPAAAAVPYP
PLRAPFPPGPTDLVPPPHAAPKKVVPPPPSPRPFAVVVPHPQRFSHHQHF
PQHQQQQQQQYPLSAPVHHQLQQQQQQQHTHRLHPQHQPYSHSSYMHQQQ
SVFQQQQQQQQQQRQQHAPLARA*

mRNA from alignment at chr12:738587..741058-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02600.1 ID=NO12G02600.1|Name=NO12G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at chr12:738587..741058- (Nannochloropsis oceanica)
ATGTCTCGGGCTCACTTCCCCTATTCCCGCCTGTTGCCCCGTCTCGGTCA
GCTCACGACTCAACACCCCCCATTTTGTCCATACACACCTCAGCAGCAGC
TGCTCTGCCCGATGACCACACTCGATTATGTCACCGGTGCGGCAGGAACC
GAGGACAAAAAGATACAGGGCGTAGGAGACCCTCGCATCATCACCACTAG
CAGTGCTAGCAAGAGCCACCATCCGATTTCGCCCAGGAGCGCCTCCTCCT
TCCGTCCAGCATCGTCGTATGCCTCCTCCCCCTCCTCGTCCTCATCCGTC
TCCTCGAAACGAAGCAGTTCCAGCAGCAGCAAGCCCATTACCTATGGCAC
GTCGACTTTGCTGCCGCCATCTGTGCTCCCTCCCGAATACCTGCATGATA
TGCGGGAGACCATCCGGCAACGCCTGGAGGCCATGCCGGCAGATCGGGAA
ACTGACCTGGTGGCCTTTGCTGAATGGGTTTCCCTGTTCGTCGGGCGCAC
TCTGACTAGCCACCGAACAGGTCTGTTGCTGCCCCCCACGGTGGCCTCGT
CCAAGGCCATTTGCAGCAGCAGGGGGAAAAGTTGTGCAGCTGGCGATGAT
TCGGAGAAAACGGAGGAGCGTCGGCAACGGCGCAAGACGGAGACTGCGGC
AGCGGCGGCGGCGCAGCAAGACGATGAACACATGTTTGTAGTGGGACAGG
GCTATTCTCGTCCCGCGCCCAATTCGCCTTCGTCCTACTCCACTTCGTCT
GCCGAGAGCTGTGTTGACACCACCACTGTCGGCAGTGGGATGCACCCTGA
AAGTGAGCAGGGAGATGAGCAGCAGCAGCAGCAGCAGTCTGCCGTCGCGG
ATGTTGCAGTAGTCTCGGCCGGTGCAGTTACTGGTGCCGGCACATCCCCC
AGGCCGAAGGTTTCCGGCAACCCGAGCGACTTGGAACTCATATCCATTCT
TTTGGATTTCTCCAGTAAGGCCAAGGCCACAGCACCGCAACGAAAAGCCA
CGCCCATGCCCGGGTCCATCTCCTCTGACTCATCTTCTCCCTCCTCCATC
GTGTCGCCCAGAAAGACCAAGAAGAAAGCCAGCCCTCTGTTACCTATTCC
CTCCCGCCACGAAACGCCGCATCATTCCTCGGTGCTGCTAAACACAGCCG
CTCAAGCACCTGCCGTAATCCACAACAGTTCGGCCACCGGCCAGTCCTCC
CCTTCTCCTCTTCCCTCGACGACGGCAGATACGCATCAGTCCTCTCATGT
TAACATGTCGATGGCGCTGCACAAGCCGTCGATTCCTATGCCACTTCATT
CTTCGTCGTCTTTCTCTTCCCCTCCCTCTTCCTCCCCCTCACCCTCTTCC
TCGCTGTCTCTTCCGCTGCCAGATCAGAAGACGACAGGCGATGCCACATC
CCCTCATCCCTCCTCTCACCTTAAACAGCAACCCCAGTTCATGGCCTCAT
CCTCATCTTCATCCTCTCCTACTCTTCCTCCTCCGCCACCTCCCTCGTAC
GCCTACTTCATGCAAGCCGGCTGCTCCCGCGAAGGAATATCTGCCGGGAA
CTGGACTTACTTCCACGGTGCCGGACTAAAAGGCCAACCCCACACAAACC
TCTTCATGGGACAGCTACTCCGCATCTCCGGCGTGCCTTCCAAGACGCAA
ACAGTCGTGGCAGGCATCGTCCGGTACAACAAAGACACGACCTGCAACGC
CGCCCTAGTCTTGGACATAGCCGAAAGTGCCTTTATCCTCACGCCTATTG
CCCCGCTTCACGCTCTTCTCACCGGAAAGTACCTTGAAGAGGAGGCTCGC
TTGACCATCATGTCTAGACTTATCTCTCAATGGCTCAATTGTCCAGCCCG
GAAGAGTGAGGCCTGGTCTCCCTCTGCCGCTTCTTCTGCCTCTTACCCCA
CGCCGTCGACAGGGTCGATAGAATCCGAAGCATCAGCAGCATCCGCAACA
TCAGTAGGAGCTTCGGTCAGGAATATGAGAACAGGAAGGCCAAAGCCAGC
TATTGAGACTTCAGCCTTGTCCCCGATAGATGTGGCAGCAGGAGGAGTTG
GAGGAGGAGGAAGAGGAGGAACACCAGCAGCGGCAGCAGTGCCTTATCCC
CCCCTTCGAGCACCCTTCCCTCCGGGTCCGACTGATTTGGTCCCCCCTCC
CCATGCAGCGCCTAAGAAAGTCGTGCCCCCTCCTCCGTCCCCGCGGCCTT
TTGCAGTGGTCGTCCCTCACCCACAGCGCTTTTCCCACCATCAACACTTC
CCTCAGCACCAACAGCAGCAGCAGCAGCAGTATCCATTGTCTGCCCCTGT
CCATCATCAACTCCAGCAGCAGCAGCAGCAGCAGCACACCCATCGGCTGC
ATCCCCAGCACCAGCCCTACTCCCATTCGTCCTACATGCATCAACAGCAG
AGTGTGTTCCAGCAGCAGCAGCAGCAGCAACAACAACAACGGCAGCAGCA
CGCTCCTCTCGCGCGCGCTTAA

Coding sequence (CDS) from alignment at chr12:738587..741058-

>NO12G02600.1 ID=NO12G02600.1|Name=NO12G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at chr12:738587..741058- (Nannochloropsis oceanica)
ATGTCTCGGGCTCACTTCCCCTATTCCCGCCTGTTGCCCCGTCTCGGTCA
GCTCACGACTCAACACCCCCCATTTTGTCCATACACACCTCAGCAGCAGC
TGCTCTGCCCGATGACCACACTCGATTATGTCACCGGTGCGGCAGGAACC
GAGGACAAAAAGATACAGGGCGTAGGAGACCCTCGCATCATCACCACTAG
CAGTGCTAGCAAGAGCCACCATCCGATTTCGCCCAGGAGCGCCTCCTCCT
TCCGTCCAGCATCGTCGTATGCCTCCTCCCCCTCCTCGTCCTCATCCGTC
TCCTCGAAACGAAGCAGTTCCAGCAGCAGCAAGCCCATTACCTATGGCAC
GTCGACTTTGCTGCCGCCATCTGTGCTCCCTCCCGAATACCTGCATGATA
TGCGGGAGACCATCCGGCAACGCCTGGAGGCCATGCCGGCAGATCGGGAA
ACTGACCTGGTGGCCTTTGCTGAATGGGTTTCCCTGTTCGTCGGGCGCAC
TCTGACTAGCCACCGAACAGGTCTGTTGCTGCCCCCCACGGTGGCCTCGT
CCAAGGCCATTTGCAGCAGCAGGGGGAAAAGTTGTGCAGCTGGCGATGAT
TCGGAGAAAACGGAGGAGCGTCGGCAACGGCGCAAGACGGAGACTGCGGC
AGCGGCGGCGGCGCAGCAAGACGATGAACACATGTTTGTAGTGGGACAGG
GCTATTCTCGTCCCGCGCCCAATTCGCCTTCGTCCTACTCCACTTCGTCT
GCCGAGAGCTGTGTTGACACCACCACTGTCGGCAGTGGGATGCACCCTGA
AAGTGAGCAGGGAGATGAGCAGCAGCAGCAGCAGCAGTCTGCCGTCGCGG
ATGTTGCAGTAGTCTCGGCCGGTGCAGTTACTGGTGCCGGCACATCCCCC
AGGCCGAAGGTTTCCGGCAACCCGAGCGACTTGGAACTCATATCCATTCT
TTTGGATTTCTCCAGTAAGGCCAAGGCCACAGCACCGCAACGAAAAGCCA
CGCCCATGCCCGGGTCCATCTCCTCTGACTCATCTTCTCCCTCCTCCATC
GTGTCGCCCAGAAAGACCAAGAAGAAAGCCAGCCCTCTGTTACCTATTCC
CTCCCGCCACGAAACGCCGCATCATTCCTCGGTGCTGCTAAACACAGCCG
CTCAAGCACCTGCCGTAATCCACAACAGTTCGGCCACCGGCCAGTCCTCC
CCTTCTCCTCTTCCCTCGACGACGGCAGATACGCATCAGTCCTCTCATGT
TAACATGTCGATGGCGCTGCACAAGCCGTCGATTCCTATGCCACTTCATT
CTTCGTCGTCTTTCTCTTCCCCTCCCTCTTCCTCCCCCTCACCCTCTTCC
TCGCTGTCTCTTCCGCTGCCAGATCAGAAGACGACAGGCGATGCCACATC
CCCTCATCCCTCCTCTCACCTTAAACAGCAACCCCAGTTCATGGCCTCAT
CCTCATCTTCATCCTCTCCTACTCTTCCTCCTCCGCCACCTCCCTCGTAC
GCCTACTTCATGCAAGCCGGCTGCTCCCGCGAAGGAATATCTGCCGGGAA
CTGGACTTACTTCCACGGTGCCGGACTAAAAGGCCAACCCCACACAAACC
TCTTCATGGGACAGCTACTCCGCATCTCCGGCGTGCCTTCCAAGACGCAA
ACAGTCGTGGCAGGCATCGTCCGGTACAACAAAGACACGACCTGCAACGC
CGCCCTAGTCTTGGACATAGCCGAAAGTGCCTTTATCCTCACGCCTATTG
CCCCGCTTCACGCTCTTCTCACCGGAAAGTACCTTGAAGAGGAGGCTCGC
TTGACCATCATGTCTAGACTTATCTCTCAATGGCTCAATTGTCCAGCCCG
GAAGAGTGAGGCCTGGTCTCCCTCTGCCGCTTCTTCTGCCTCTTACCCCA
CGCCGTCGACAGGGTCGATAGAATCCGAAGCATCAGCAGCATCCGCAACA
TCAGTAGGAGCTTCGGTCAGGAATATGAGAACAGGAAGGCCAAAGCCAGC
TATTGAGACTTCAGCCTTGTCCCCGATAGATGTGGCAGCAGGAGGAGTTG
GAGGAGGAGGAAGAGGAGGAACACCAGCAGCGGCAGCAGTGCCTTATCCC
CCCCTTCGAGCACCCTTCCCTCCGGGTCCGACTGATTTGGTCCCCCCTCC
CCATGCAGCGCCTAAGAAAGTCGTGCCCCCTCCTCCGTCCCCGCGGCCTT
TTGCAGTGGTCGTCCCTCACCCACAGCGCTTTTCCCACCATCAACACTTC
CCTCAGCACCAACAGCAGCAGCAGCAGCAGTATCCATTGTCTGCCCCTGT
CCATCATCAACTCCAGCAGCAGCAGCAGCAGCAGCACACCCATCGGCTGC
ATCCCCAGCACCAGCCCTACTCCCATTCGTCCTACATGCATCAACAGCAG
AGTGTGTTCCAGCAGCAGCAGCAGCAGCAACAACAACAACGGCAGCAGCA
CGCTCCTCTCGCGCGCGCTTAA

Synonyms

Publications