NO12G02510.1, NO12G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02510.1
Unique NameNO12G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr12:717080..718146 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:717080..718146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02510.1 vs.
Match: EWM25783.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]; EWM25784.1 Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]; EWM25785.1 Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 8.600e-43
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0 
Query:    1 MALRQLLRRGATVASVVIPTSQRAVACPVVASLRYVSSTSVTQLPLDGSKMPSATESEEEEGREPSGTPWTPAPVAEDYEETIQILLESHKVEDALDIFGRMIKRGFRPSSNITDELYAVAKTKPEWQAAAVKALDGLP 140
            M LR+ L+ GA  A+      QRA   PV+A +R VSSTS  + P +G+++P+AT+SEE+EGRE +GTPWTPAPVAEDYEETIQILL SHKVEDALDIFGRMIKRGFRPSS ITD+LY  AKTKPEWQAAAVKAL GLP
Sbjct:    1 MTLRRFLQGGALAAAGAKLGWQRAAMSPVLA-MRSVSSTSAIRAPSEGNEVPAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGRMIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP 138
The following BLAST results are available for this feature:
BLAST of NO12G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25783.18.600e-4370.50Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02510NO12G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02510.1NO12G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02510.1.cds1NO12G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02510.1.cds2NO12G02510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02510.1.cds3NO12G02510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02510.1.cds4NO12G02510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02510.1.cds5NO12G02510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02510.1 ID=NO12G02510.1|Name=NO12G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGT
CATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGA
GGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCAAG
ATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCAGG
CACCCCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGATTC
AAATCTTGCTCGAGAGCCACAAGGTGGAGGATGCACTGGATATCTTTGGG
CGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATATCACGGACGAGCT
GTACGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAAGG
CGCTTGATGGTCTGCCCTAA
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protein sequence of NO12G02510.1

>NO12G02510.1-protein ID=NO12G02510.1-protein|Name=NO12G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MALRQLLRRGATVASVVIPTSQRAVACPVVASLRYVSSTSVTQLPLDGSK
MPSATESEEEEGREPSGTPWTPAPVAEDYEETIQILLESHKVEDALDIFG
RMIKRGFRPSSNITDELYAVAKTKPEWQAAAVKALDGLP*
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mRNA from alignment at chr12:717080..718146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02510.1 ID=NO12G02510.1|Name=NO12G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp|location=Sequence derived from alignment at chr12:717080..718146+ (Nannochloropsis oceanica)
ATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGT
CATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGG
TACGTGAGAAGGGGAAGAAGAGAGAGGGAGGAGGATGGGGCAGCGTGATG
CATGAGAGAGAGATCCATACCCTCCCCCACCACTCATACAAACACGAGCA
GAGGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCA
AGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCA
GGTGAGTCCCGCGCTAAAGTGGAGATGCTTGGGATGAACTTTTGGAATCT
CACTGTAGGCAACAGACAGGGCTCCTGATATATGTCAATTCAGAATGGTC
TGGATGGCATACTACCGCGAAGAGATGCGCTTTTTAAAACCCCAGAGACA
TGTGATGCCTTCCTTTTTATCCAATTCTTCTGCATTGCACTTTAAATTTA
ATCATTCTACTCAATCAAATCCCACTACGTCCAATTAAAATTCAGGCACC
CCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGATTCAAAT
CTTGCTCGAGAGCCACAAGGTAAGGAAGAGGACAAGGAGGGAAGAGAAAG
GATTGGGTTGAGCTGTAGATAGTCATGTATTATCACACAGGCTCACTCGA
AACTCACCTCATTTCCATTCTGAAACATAGGTGGAGGATGCACTGGATAT
CTTTGGGCGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATGTAAGCC
TCTCTTTCTTCGTCCTTTTTTGTCTAGCGCGGCGCTGTAAATTGCTCGCT
ATCTGCACTTCTTTCATCTTGCTTGCAACGGAATACGTCAATTCATCCTC
AATTATTGTGATCTTTGAAGATGCGGCACCAAAGCAATCTTTTTCCCTTC
CCTTTCTTCATTTCCCTATGCCTCCTCGTCTAGATCACGGACGAGCTGTA
CGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAAGGCGC
TTGATGGTCTGCCCTAA
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Coding sequence (CDS) from alignment at chr12:717080..718146+

>NO12G02510.1 ID=NO12G02510.1|Name=NO12G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr12:717080..718146+ (Nannochloropsis oceanica)
ATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGT
CATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGA
GGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCAAG
ATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCAGG
CACCCCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGATTC
AAATCTTGCTCGAGAGCCACAAGGTGGAGGATGCACTGGATATCTTTGGG
CGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATATCACGGACGAGCT
GTACGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAAGG
CGCTTGATGGTCTGCCCTAA
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Synonyms
Publications