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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:714467..716732 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02500.1 vs.
Match: EWM25778.1 (zinc finger cchc domain-containing protein 7 [Nannochloropsis gaditana]) HSP 1 Score: 357.5 bits (916), Expect = 9.300e-95 Identity = 181/280 (64.64%), Postives = 210/280 (75.00%), Query Frame = 0
Query: 334 MLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASER-KKRGSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAAAAAAAADGGRGGGRKSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTPMLRRHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSHIPQHPLVPAPIAPTYYLQQGRGGETVGGR 613
ML++R T+KFRGV+ TYKKA D RAL EMEG RIDNR VFL ASER + RGS+GKGESRYFL+DK LFCRRCH+VGHTMKFCPNP KA+PCTICAA+ GH D CPE+ P G LCLQCGA+ HEDS CV RL+A A LKA VRCL CA++GHGALCGPHA+ A G G GR++P +V CF+CGS+GHFGYHC+ RPQ + LRRHSYSGTH+RYN DPP P PP PP + PS+IPQH LVP P+ T Y Q+GR G + GGR
Sbjct: 1 MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALT-GHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHASTNAPT--GEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQ---EAFQLRRHSYSGTHVRYNVDDPPAPDPP--PPVHTVPSNIPQHHLVPGPMVSTIYSQRGR-GLSPGGR 271
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02500.1 ID=NO12G02500.1|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp
ACAGCTACATAAGCTGCTCAGCTGATCTGTGCTGCTGTACATGCCCTGGC
CGCAGGCGCATTACACATTCGCCAGCTAGGCCTCTCTTAGACCTCCTCTC
CCACGCACATAATTACCCAACGTCGATTCTACCACACAAGGGGCACCTCT
TACACTCGAGTGGTGGTCAGCTGAGCATATGAGCAAGCGCTCGAAAAAAG
GCGCGGCTGCTGCCGCTGCTGCTGCAGCTGCAAAAGACGAGGAGGAGATG
GTGGAGGCGACGGACGTGGACGAGCAAGGAGAAGAAAGCAACCGGCCAAG
CAAGAAGAGCAAGTCGTCCCCGCTTAGCTCATACACGCTCAAGGGCGTGG
ATGTGGAAAAAGCGGAGGGGGACGAGACGGAAAGGGACGAGGATGAAAAC
AAGACGTCGCATGGTAACAGCCACAGCTCCAAGAGCAGCAAGTCCCCGCG
GGCTAGAAAATCCCCTTCTCCCTCACACAAATCCGACTCGGCTGACAAGC
CTTCTCGAACAGCATCACCAAGAGGCGAGCAGGACAGTGTAACTCTGGCA
GTGCCTATAACAAGTGCCTCGGCCAAAGCAATTCTTCCGTACAGCAGCCC
CAAGAACGGTTTATCCTCCAAATCACGACATGCCTCCCGCTCTCCCTCTC
CTTCCCTCCCTCCTCCCCCTCCTACTCTTCCTCCTGCAGTCCCTGGCCAG
ACCCTGGCAACAACACTCCCAAAACCCGACTCATCTGCTGCTCTCCTCCC
CAGTGTTGCTTCAGCTGAGTCTGTCCTTGTCCCTAAAAAGACAGCAGCTT
CCTTATCAAGTTTTGCCAAGCGCCTTCTTGTTCCCCGAGCTCCTCAGGAA
GTGGAGGTACCCGAGGCGATTCCATTGAACGATTTCATCTTGGAAGGCTT
TGGGCAGGAGCATGTGCATCGACCCACGGCTCAATTGGAGGAGGATGAGA
GCAGTGAGGAGGAGGAGGGAGGGGAGGAGGGAGGGGTCGCAAGTGTGGGC
AAGCCGGGGGCAGTGGGGTGTGTGGGGGACGATAAGGACGAGGATGGTGA
GGAACGGAAGGAGGACGCGCCCGTGCATACGTGTAAGACGCTACGGGCGT
GGAACCTGTGGTTTTCGAGCACGGAAGACACGTTGAGGAGGGCTTTCGGG
AGGTTTGGGGAGCTGGAGCGTTTTGAGATGTTGTATGACCGGGATACGAA
GAAGTTTCGAGGGGTGGTGATTGCCACGTATAAGAAGGCGAGTGACGCGG
GGAGGGCTTTGACGGAAATGGAAGGAACAAGGATCGACAACCGGAATGTA
TTCTTGGAGGCTTCGGAAAGGAAAAAGAGGGGGTCGATGGGGAAGGGGGA
ATCACGGTATTTCCTCCTTGATAAGACCTTATTCTGCCGTCGGTGCCATG
AGGTGGGACATACAATGAAATTCTGCCCGAATCCCGCCAAGGCAAAGCCA
TGCACTATTTGCGCGGCAATTGATGGAGGCCACGATGCTGACTCCTGCCC
CGAGGTGGTGCGTGCGGGGCCTGTGGGTGTGTTGTGTTTGCAGTGCGGTG
CTTCGGGTCACGAGGACTCGGTGTGCGTTCGAAGGCTGAGGGCCACGGCG
GAGTTGAAGGCACACACAAGTGTCCGATGCTTGAGATGTGCACAGATGGG
GCATGGCGCATTGTGTGGACCTCATGCTGCTGCTGCTGCTGCTGCTGCTG
ATGGTGGGAGAGGAGGAGGGAGGAAGTCTCCCAGGTATGTTTATTGCTTT
CGGTGTGGATCTTCGGGCCATTTTGGATATCACTGTGATTCGCGACCGCA
GGGGGGAACGGATACACCAATGCTTCGTCGTCATTCCTACTCGGGGACGC
ACATTCGGTACAATGCCACGGACCCTCCCCCTCCTTTTCCTCCATCTGGA
CCTCCTGCCTACGAGGCCCCCTCCCATATCCCGCAACATCCTCTTGTCCC
TGCTCCGATTGCCCCGACCTACTATCTCCAACAGGGAAGGGGAGGCGAGA
CGGTTGGAGGGAGGAGTAGTGGGGTCGATGATGGTGGTGGAGGAGGAGGA
AGCCGTCACGACCGGAACCCCGCACTACCTCCCCAGTATCACGCCGCGCA
CGCTTCATCAGGAACGTATTCCCCTCCACGACAGGATTATAAGCGGCGGA
GATCGGGGGGAAATGAACGTAACTGAGGAATAGGATGGTTGCGATGGAGG
GGGAAGAGGGGAGAAGGCGATGAAGTGTACAAGTAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAG back to topprotein sequence of NO12G02500.1 >NO12G02500.1-protein ID=NO12G02500.1-protein|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MSKRSKKGAAAAAAAAAAKDEEEMVEATDVDEQGEESNRPSKKSKSSPLS
SYTLKGVDVEKAEGDETERDEDENKTSHGNSHSSKSSKSPRARKSPSPSH
KSDSADKPSRTASPRGEQDSVTLAVPITSASAKAILPYSSPKNGLSSKSR
HASRSPSPSLPPPPPTLPPAVPGQTLATTLPKPDSSAALLPSVASAESVL
VPKKTAASLSSFAKRLLVPRAPQEVEVPEAIPLNDFILEGFGQEHVHRPT
AQLEEDESSEEEEGGEEGGVASVGKPGAVGCVGDDKDEDGEERKEDAPVH
TCKTLRAWNLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIAT
YKKASDAGRALTEMEGTRIDNRNVFLEASERKKRGSMGKGESRYFLLDKT
LFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVG
VLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA
AAAAAAADGGRGGGRKSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTPMLR
RHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSHIPQHPLVPAPIAPTYYL
QQGRGGETVGGRSSGVDDGGGGGGSRHDRNPALPPQYHAAHASSGTYSPP
RQDYKRRRSGGNERN* back to topmRNA from alignment at chr12:714467..716732- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02500.1 ID=NO12G02500.1|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at chr12:714467..716732- (Nannochloropsis oceanica)
ACAGCTACATAAGCTGCTCAGCTGATCTGTGCTGCTGTACATGCCCTGGC
CGCAGGCGCATTACACATTCGCCAGCTAGGCCTCTCTTAGACCTCCTCTC
CCACGCACATAATTACCCAACGTCGATTCTACCACACAAGGGGCACCTCT
TACACTCGAGTGGTGGTCAGCTGAGCATATGAGCAAGCGCTCGAAAAAAG
GCGCGGCTGCTGCCGCTGCTGCTGCAGCTGCAAAAGACGAGGAGGAGATG
GTGGAGGCGACGGACGTGGACGAGCAAGGAGAAGAAAGCAACCGGCCAAG
CAAGAAGAGCAAGTCGTCCCCGCTTAGCTCATACACGCTCAAGGGCGTGG
ATGTGGAAAAAGCGGAGGGGGACGAGACGGAAAGGGACGAGGATGAAAAC
AAGACGTCGCATGGTAACAGCCACAGCTCCAAGAGCAGCAAGTCCCCGCG
GGCTAGAAAATCCCCTTCTCCCTCACACAAATCCGACTCGGCTGACAAGC
CTTCTCGAACAGCATCACCAAGAGGCGAGCAGGACAGTGTAACTCTGGCA
GTGCCTATAACAAGTGCCTCGGCCAAAGCAATTCTTCCGTACAGCAGCCC
CAAGAACGGTTTATCCTCCAAATCACGACATGCCTCCCGCTCTCCCTCTC
CTTCCCTCCCTCCTCCCCCTCCTACTCTTCCTCCTGCAGTCCCTGGCCAG
ACCCTGGCAACAACACTCCCAAAACCCGACTCATCTGCTGCTCTCCTCCC
CAGTGTTGCTTCAGCTGAGTCTGTCCTTGTCCCTAAAAAGACAGCAGCTT
CCTTATCAAGTTTTGCCAAGCGCCTTCTTGTTCCCCGAGCTCCTCAGGAA
GTGGAGGTACCCGAGGCGATTCCATTGAACGATTTCATCTTGGAAGGCTT
TGGGCAGGAGCATGTGCATCGACCCACGGCTCAATTGGAGGAGGATGAGA
GCAGTGAGGAGGAGGAGGGAGGGGAGGAGGGAGGGGTCGCAAGTGTGGGC
AAGCCGGGGGCAGTGGGGTGTGTGGGGGACGATAAGGACGAGGATGGTGA
GGAACGGAAGGAGGACGCGCCCGTGCATACGTGTAAGACGCTACGGGCGT
GGAACCTGTGGTTTTCGAGCACGGAAGACACGTTGAGGAGGGCTTTCGGG
AGGTTTGGGGAGCTGGAGCGTTTTGAGATGTTGTATGACCGGGATACGAA
GAAGTTTCGAGGGGTGGTGATTGCCACGTATAAGAAGGCGAGTGACGCGG
GGAGGGCTTTGACGGAAATGGAAGGAACAAGGATCGACAACCGGAATGTA
TTCTTGGAGGCTTCGGAAAGGAAAAAGAGGGGGTCGATGGGGAAGGGGGA
ATCACGGTATTTCCTCCTTGATAAGACCTTATTCTGCCGTCGGTGCCATG
AGGTGGGACATACAATGAAATTCTGCCCGAATCCCGCCAAGGCAAAGCCA
TGCACTATTTGCGCGGCAATTGATGGAGGCCACGATGCTGACTCCTGCCC
CGAGGTGGTGCGTGCGGGGCCTGTGGGTGTGTTGTGTTTGCAGTGCGGTG
CTTCGGGTCACGAGGACTCGGTGTGCGTTCGAAGGCTGAGGGCCACGGCG
GAGTTGAAGGCACACACAAGTGTCCGATGCTTGAGATGTGCACAGATGGG
GCATGGCGCATTGTGTGGACCTCATGCTGCTGCTGCTGCTGCTGCTGCTG
ATGGTGGGAGAGGAGGAGGGAGGAAGTCTCCCAGGTATGTTTATTGCTTT
CGGTGTGGATCTTCGGGCCATTTTGGATATCACTGTGATTCGCGACCGCA
GGGGGGAACGGATACACCAATGCTTCGTCGTCATTCCTACTCGGGGACGC
ACATTCGGTACAATGCCACGGACCCTCCCCCTCCTTTTCCTCCATCTGGA
CCTCCTGCCTACGAGGCCCCCTCCCATATCCCGCAACATCCTCTTGTCCC
TGCTCCGATTGCCCCGACCTACTATCTCCAACAGGGAAGGGGAGGCGAGA
CGGTTGGAGGGAGGAGTAGTGGGGTCGATGATGGTGGTGGAGGAGGAGGA
AGCCGTCACGACCGGAACCCCGCACTACCTCCCCAGTATCACGCCGCGCA
CGCTTCATCAGGAACGTATTCCCCTCCACGACAGGATTATAAGCGGCGGA
GATCGGGGGGAAATGAACGTAACTGAGGAATAGGATGGTTGCGATGGAGG
GGGAAGAGGGGAGAAGGCGATGAAGTGTACAAGTAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAG back to topCoding sequence (CDS) from alignment at chr12:714467..716732- >NO12G02500.1 ID=NO12G02500.1|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr12:714467..716732- (Nannochloropsis oceanica)
ATGAGCAAGCGCTCGAAAAAAGGCGCGGCTGCTGCCGCTGCTGCTGCAGC
TGCAAAAGACGAGGAGGAGATGGTGGAGGCGACGGACGTGGACGAGCAAG
GAGAAGAAAGCAACCGGCCAAGCAAGAAGAGCAAGTCGTCCCCGCTTAGC
TCATACACGCTCAAGGGCGTGGATGTGGAAAAAGCGGAGGGGGACGAGAC
GGAAAGGGACGAGGATGAAAACAAGACGTCGCATGGTAACAGCCACAGCT
CCAAGAGCAGCAAGTCCCCGCGGGCTAGAAAATCCCCTTCTCCCTCACAC
AAATCCGACTCGGCTGACAAGCCTTCTCGAACAGCATCACCAAGAGGCGA
GCAGGACAGTGTAACTCTGGCAGTGCCTATAACAAGTGCCTCGGCCAAAG
CAATTCTTCCGTACAGCAGCCCCAAGAACGGTTTATCCTCCAAATCACGA
CATGCCTCCCGCTCTCCCTCTCCTTCCCTCCCTCCTCCCCCTCCTACTCT
TCCTCCTGCAGTCCCTGGCCAGACCCTGGCAACAACACTCCCAAAACCCG
ACTCATCTGCTGCTCTCCTCCCCAGTGTTGCTTCAGCTGAGTCTGTCCTT
GTCCCTAAAAAGACAGCAGCTTCCTTATCAAGTTTTGCCAAGCGCCTTCT
TGTTCCCCGAGCTCCTCAGGAAGTGGAGGTACCCGAGGCGATTCCATTGA
ACGATTTCATCTTGGAAGGCTTTGGGCAGGAGCATGTGCATCGACCCACG
GCTCAATTGGAGGAGGATGAGAGCAGTGAGGAGGAGGAGGGAGGGGAGGA
GGGAGGGGTCGCAAGTGTGGGCAAGCCGGGGGCAGTGGGGTGTGTGGGGG
ACGATAAGGACGAGGATGGTGAGGAACGGAAGGAGGACGCGCCCGTGCAT
ACGTGTAAGACGCTACGGGCGTGGAACCTGTGGTTTTCGAGCACGGAAGA
CACGTTGAGGAGGGCTTTCGGGAGGTTTGGGGAGCTGGAGCGTTTTGAGA
TGTTGTATGACCGGGATACGAAGAAGTTTCGAGGGGTGGTGATTGCCACG
TATAAGAAGGCGAGTGACGCGGGGAGGGCTTTGACGGAAATGGAAGGAAC
AAGGATCGACAACCGGAATGTATTCTTGGAGGCTTCGGAAAGGAAAAAGA
GGGGGTCGATGGGGAAGGGGGAATCACGGTATTTCCTCCTTGATAAGACC
TTATTCTGCCGTCGGTGCCATGAGGTGGGACATACAATGAAATTCTGCCC
GAATCCCGCCAAGGCAAAGCCATGCACTATTTGCGCGGCAATTGATGGAG
GCCACGATGCTGACTCCTGCCCCGAGGTGGTGCGTGCGGGGCCTGTGGGT
GTGTTGTGTTTGCAGTGCGGTGCTTCGGGTCACGAGGACTCGGTGTGCGT
TCGAAGGCTGAGGGCCACGGCGGAGTTGAAGGCACACACAAGTGTCCGAT
GCTTGAGATGTGCACAGATGGGGCATGGCGCATTGTGTGGACCTCATGCT
GCTGCTGCTGCTGCTGCTGCTGATGGTGGGAGAGGAGGAGGGAGGAAGTC
TCCCAGGTATGTTTATTGCTTTCGGTGTGGATCTTCGGGCCATTTTGGAT
ATCACTGTGATTCGCGACCGCAGGGGGGAACGGATACACCAATGCTTCGT
CGTCATTCCTACTCGGGGACGCACATTCGGTACAATGCCACGGACCCTCC
CCCTCCTTTTCCTCCATCTGGACCTCCTGCCTACGAGGCCCCCTCCCATA
TCCCGCAACATCCTCTTGTCCCTGCTCCGATTGCCCCGACCTACTATCTC
CAACAGGGAAGGGGAGGCGAGACGGTTGGAGGGAGGAGTAGTGGGGTCGA
TGATGGTGGTGGAGGAGGAGGAAGCCGTCACGACCGGAACCCCGCACTAC
CTCCCCAGTATCACGCCGCGCACGCTTCATCAGGAACGTATTCCCCTCCA
CGACAGGATTATAAGCGGCGGAGATCGGGGGGAAATGAACGTAACTGA back to top
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