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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:712172..714161 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02490.1 vs.
Match: EWM25776.1 (Cobalamin (vitamin B12) biosynthesis CobW [Nannochloropsis gaditana]) HSP 1 Score: 703.4 bits (1814), Expect = 6.400e-199 Identity = 364/629 (57.87%), Postives = 466/629 (74.09%), Query Frame = 0
Query: 1 MVEPINLCLGYEQRVLDSLTRPFILPVTLITGFLGSGKTTLLRSLLAQKQNLRIATLVNDLGEFNHDVQLLELVTT--SSLKPMHHPLSH---------QPASDRVIDLHGNCLCCSNLQQDMRQNVWECLQTPDGEARAVDYLVIETSGVTDPETLIRALDEKFGKMTRARLDSVVTVVDADVLYSELTSSMNCATKAAPDD-DISVVGRVGVSAPPLMSTARRHQLECADIILLNKIDLLQDSSQLDIVEACLQTLNPLARIHRTRYAEVPLPCVLDVELPDVGIGQMTHETGTANFATRNASTLRSQASRNVTIRRKANCLLTGSTAACAADAPALTDKNPMATHLITDGLSALTFESTCPFLLYKLQHFFSHVFPAEAVVRCKGFMHVRDLPGRRVALSMSGRRRFHVSDEGPWQSAPKTQLVFIGHEPGFDKAVVEIALTEACAGWDGNVEKGGNDDASASVQLAAKVRALVAQDERMELVDLHTLLAPLLFPRM-RDKAEESMSSLPVWANCLVAFRLTGAPSLGVTSEHLRMTHGVDLNAMSRALQAKVNLAGVLEMPLLHTLPFGGGEEDVALCFVVKDGEEAEGRGETYYTKAWEWMVSAAANTVTSRFLGHLKLCKCGH 617
M +PIN+C+ YEQR LD+LT PFILPVT+ITG+LGSGKTTLLR LL QK+NLRIA +VNDLG+FNHDVQLL+L T +S P +H S SDR++DLHG+CLCCS+LQQ+MRQN+WECLQTP+ E RA+DYLVIETSGVTDPE +I+ALDEKFGKMTRARLDSVVT+VDADVL++EL S T A D ++ V ++ P + RR Q+ECAD+I+LNK DL++D + LD +EA L+ LNPLARIHRTR+A++PLPCVLDVELPD+G G MTHE A +ATR STLRS+ S+ V+ R + L TG+ A A +D+N + HL+++G+SA TFES PFLL KLQ FFSHVFPAEAV+R KGF++VR+L GRRVALS+SGRRRFH+SDEG W SAP TQ+VFIG G+ K+ ++ +L AC D +D AS LAA++R ++A D+RME++D +L PLL ++ R+ + SLP W +CLV FRLTGAPSLGVT++HLR+THGVDL+A++ +LQ KVN+AG+ PLL+TLPF G E +ALCFVV++G +G+G Y++ WEW V+ A++V +R L HLKLCKCGH
Sbjct: 1 MTDPINMCMTYEQRTLDALTTPFILPVTIITGYLGSGKTTLLRKLLTQKKNLRIAAMVNDLGDFNHDVQLLQLEKTVANSSSPSNHGFSQAARLSPDKSNAPSDRIMDLHGSCLCCSHLQQEMRQNIWECLQTPEQEERAIDYLVIETSGVTDPERIIQALDEKFGKMTRARLDSVVTMVDADVLHAELVDS----TPAVRDTRGATLSAHVPSASHPGIPPTRRRQIECADVIILNKTDLVKDLAYLDDLEAFLRKLNPLARIHRTRFADLPLPCVLDVELPDLGAGSMTHEESNALYATRKVSTLRSEPSQAVSSRARKTDLFTGA-------ATAASDQNSRS-HLVSEGISAFTFESKSPFLLRKLQRFFSHVFPAEAVIRSKGFLYVRELAGRRVALSISGRRRFHLSDEGTWSSAPGTQVVFIGRLSGYQKSQIQTSLQNACKADDEETSFPLSDPHLASSSLAARIRDMIALDKRMEVMDARAILGPLLRQQLKRNYVGAAPHSLPSWVDCLVTFRLTGAPSLGVTADHLRLTHGVDLDALNISLQQKVNMAGIQGRPLLYTLPFDGEERGIALCFVVEEGNAEDGKGRAYFSSTWEW-VTLLADSVIARNLSHLKLCKCGH 616
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp CAGGTTGCGCTGGCCGTCACCATGGTCGAGCCCATCAATTTGTGTCTGGG GTACGAACAGCGCGTGTTGGATTCCTTGACGCGACCTTTCATCTTGCCCG TCACACTCATCACGGGTTTCCTCGGCTCAGGGAAGACAACCCTGCTGCGC AGCCTCCTAGCGCAAAAGCAGAACCTTCGTATCGCCACTCTGGTCAACGA CCTCGGAGAATTCAACCACGACGTGCAGTTGTTGGAGCTGGTTACGACTT CCTCCCTCAAGCCCATGCATCACCCTCTCTCCCACCAGCCTGCCTCAGAT CGCGTAATCGACCTGCACGGCAACTGTCTCTGCTGCTCAAATCTCCAGCA AGACATGCGACAGAATGTATGGGAATGCTTGCAAACGCCGGACGGAGAAG CCCGGGCTGTGGATTACCTGGTGATTGAAACGAGTGGTGTCACTGACCCG GAGACCCTTATTCGCGCCTTGGACGAGAAATTCGGAAAGATGACTCGCGC GCGCCTGGACAGTGTCGTGACTGTGGTGGATGCGGATGTATTGTACTCCG AGCTGACTTCGTCTATGAATTGTGCGACAAAAGCCGCTCCTGATGATGAT ATTTCGGTGGTGGGAAGAGTAGGAGTATCTGCTCCACCACTTATGTCCAC CGCACGGCGACACCAACTCGAATGCGCCGATATCATTCTCCTCAACAAGA TCGATCTCCTACAAGACTCTAGCCAACTAGATATTGTCGAAGCATGCTTG CAGACACTCAACCCACTTGCTCGTATTCATCGCACGCGCTATGCAGAGGT CCCTTTGCCCTGTGTCCTCGACGTGGAGCTCCCAGATGTTGGGATAGGCC AGATGACACACGAGACGGGCACTGCGAACTTCGCCACCCGCAATGCCTCT ACACTTCGATCTCAGGCCTCGCGCAACGTAACCATCAGAAGGAAGGCGAA TTGTTTGCTGACAGGATCCACAGCTGCCTGTGCTGCTGATGCTCCGGCTT TGACGGACAAGAACCCGATGGCTACCCACCTCATCACTGATGGCCTCTCT GCTCTTACGTTTGAAAGCACCTGTCCATTCCTCCTGTACAAGCTCCAACA TTTCTTCTCTCATGTTTTCCCTGCTGAGGCCGTGGTTCGCTGCAAAGGGT TTATGCACGTCAGGGACCTGCCCGGGAGGCGCGTGGCTCTAAGCATGAGC GGGCGTCGGCGTTTTCACGTCTCGGACGAAGGTCCATGGCAGTCGGCCCC GAAGACGCAACTGGTCTTTATCGGCCACGAGCCCGGCTTTGATAAAGCAG TGGTCGAGATTGCATTGACAGAAGCTTGTGCAGGTTGGGATGGGAACGTG GAGAAAGGAGGAAATGATGATGCCTCAGCCTCAGTTCAATTGGCGGCCAA AGTACGGGCCCTCGTCGCCCAGGATGAACGGATGGAATTGGTGGACCTCC ACACACTCCTCGCACCTCTACTGTTCCCGCGTATGCGAGACAAGGCCGAG GAGTCTATGTCCAGTCTGCCCGTGTGGGCGAACTGTTTGGTGGCATTTCG CTTGACCGGGGCGCCGTCCTTGGGCGTGACATCGGAGCACCTACGAATGA CACACGGAGTGGATCTAAATGCAATGAGTCGGGCCTTGCAAGCGAAGGTT AATTTGGCCGGTGTGCTAGAAATGCCACTCCTACATACGTTGCCATTCGG GGGGGGGGAAGAGGACGTGGCCTTGTGTTTTGTTGTGAAGGATGGGGAGG AAGCGGAGGGACGAGGGGAAACGTACTATACCAAGGCGTGGGAGTGGATG GTGTCAGCGGCGGCCAACACTGTGACTTCTCGCTTCTTGGGTCACTTGAA GTTGTGCAAGTGCGGCCACTAAATTGTACAAATACCGCACATTATAACAG AATGAAAGAAAACTTGTTGAACTATGTATCGGGGGACCATGTGAAGTCCG CTCGCCAAACCATAAGCTCGCCGAGAATTGAAAAGTCATA back to topprotein sequence of NO12G02490.1 >NO12G02490.1-protein ID=NO12G02490.1-protein|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp MVEPINLCLGYEQRVLDSLTRPFILPVTLITGFLGSGKTTLLRSLLAQKQ NLRIATLVNDLGEFNHDVQLLELVTTSSLKPMHHPLSHQPASDRVIDLHG NCLCCSNLQQDMRQNVWECLQTPDGEARAVDYLVIETSGVTDPETLIRAL DEKFGKMTRARLDSVVTVVDADVLYSELTSSMNCATKAAPDDDISVVGRV GVSAPPLMSTARRHQLECADIILLNKIDLLQDSSQLDIVEACLQTLNPLA RIHRTRYAEVPLPCVLDVELPDVGIGQMTHETGTANFATRNASTLRSQAS RNVTIRRKANCLLTGSTAACAADAPALTDKNPMATHLITDGLSALTFEST CPFLLYKLQHFFSHVFPAEAVVRCKGFMHVRDLPGRRVALSMSGRRRFHV SDEGPWQSAPKTQLVFIGHEPGFDKAVVEIALTEACAGWDGNVEKGGNDD ASASVQLAAKVRALVAQDERMELVDLHTLLAPLLFPRMRDKAEESMSSLP VWANCLVAFRLTGAPSLGVTSEHLRMTHGVDLNAMSRALQAKVNLAGVLE MPLLHTLPFGGGEEDVALCFVVKDGEEAEGRGETYYTKAWEWMVSAAANT VTSRFLGHLKLCKCGH* back to topmRNA from alignment at chr12:712172..714161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at chr12:712172..714161- (Nannochloropsis oceanica) CAGGTTGCGCTGGCCGTCACCATGGTCGAGCCCATCAATTTGTGTCTGGG
GTACGAACAGCGCGTGTTGGATTCCTTGACGCGACCTTTCATCTTGCCCG
TCACACTCATCACGGGTTTCCTCGGCTCAGGGAAGACAACCCTGCTGCGC
AGCCTCCTAGCGCAAAAGCAGAACCTTCGTATCGCCACTCTGGTCAACGA
CCTCGGAGAATTCAACCACGACGTGCAGTTGTTGGAGCTGGTTACGACTT
CCTCCCTCAAGCCCATGCATCACCCTCTCTCCCACCAGCCTGCCTCAGAT
CGCGTAATCGACCTGCACGGCAACTGTCTCTGCTGCTCAAATCTCCAGCA
AGACATGCGACAGAATGTATGGGAATGCTTGCAAACGCCGGACGGAGAAG
CCCGGGCTGTGGATTACCTGGTGATTGAAACGAGTGGTGTCACTGACCCG
GAGACCCTTATTCGCGCCTTGGACGAGAAATTCGGAAAGATGACTCGCGC
GCGCCTGGACAGTGTCGTGACTGTGGTGGATGCGGATGTATTGTACTCCG
AGCTGACTTCGTCTATGAATTGTGCGACAAAAGCCGCTCCTGATGATGAT
ATTTCGGTGGTGGGAAGAGTAGGAGTATCTGCTCCACCACTTATGTCCAC
CGCACGGCGACACCAACTCGAATGCGCCGATATCATTCTCCTCAACAAGA
TCGATCTCCTACAAGACTCTAGCCAACTAGATATTGTCGAAGCATGCTTG
CAGACACTCAACCCACTTGCTCGTATTCATCGCACGCGCTATGCAGAGGT
CCCTTTGCCCTGTGTCCTCGACGTGGAGCTCCCAGATGTTGGGATAGGCC
AGATGACACACGAGACGGGCACTGCGAACTTCGCCACCCGCAATGCCTCT
ACACTTCGATCTCAGGCCTCGCGCAACGTAACCATCAGAAGGAAGGCGAA
TTGTTTGCTGACAGGATCCACAGCTGCCTGTGCTGCTGATGCTCCGGCTT
TGACGGACAAGAACCCGATGGCTACCCACCTCATCACTGATGGCCTCTCT
GCTCTTACGTTTGAAAGCACCTGTCCATTCCTCCTGTACAAGCTCCAACA
TTTCTTCTCTCATGTTTTCCCTGCTGAGGCCGTGGTTCGCTGCAAAGGGT
TTATGCACGTCAGGGACCTGCCCGGGAGGCGCGTGGCTCTAAGCATGAGC
GGGCGTCGGCGTTTTCACGTCTCGGACGAAGGTCCATGGCAGTCGGCCCC
GAAGACGCAACTGGTCTTTATCGGCCACGAGCCCGGCTTTGATAAAGCAG
TGGTCGAGATTGCATTGACAGAAGCTTGTGCAGGTTGGGATGGGAACGTG
GAGAAAGGAGGAAATGATGATGCCTCAGCCTCAGTTCAATTGGCGGCCAA
AGTACGGGCCCTCGTCGCCCAGGATGAACGGATGGAATTGGTGGACCTCC
ACACACTCCTCGCACCTCTACTGTTCCCGCGTATGCGAGACAAGGCCGAG
GAGTCTATGTCCAGTCTGCCCGTGTGGGCGAACTGTTTGGTGGCATTTCG
CTTGACCGGGGCGCCGTCCTTGGGCGTGACATCGGAGCACCTACGAATGA
CACACGGAGTGGATCTAAATGCAATGAGTCGGGCCTTGCAAGCGAAGGTT
AATTTGGCCGGTGTGCTAGAAATGCCACTCCTACATACGTTGCCATTCGG
GGGGGGGGAAGAGGACGTGGCCTTGTGTTTTGTTGTGAAGGATGGGGAGG
AAGCGGAGGGACGAGGGGAAACGTACTATACCAAGGCGTGGGAGTGGATG
GTGTCAGCGGCGGCCAACACTGTGACTTCTCGCTTCTTGGGTCACTTGAA
GTTGTGCAAGTGCGGCCACTAAATTGTACAAATACCGCACATTATAACAG
AATGAAAGAAAACTTGTTGAACTATGTATCGGGGGACCATGTGAAGTCCG
CTCGCCAAACCATAAGCTCGCCGAGAATTGAAAAGTCATA back to topCoding sequence (CDS) from alignment at chr12:712172..714161- >NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr12:712172..714161- (Nannochloropsis oceanica) ATGGTCGAGCCCATCAATTTGTGTCTGGGGTACGAACAGCGCGTGTTGGA TTCCTTGACGCGACCTTTCATCTTGCCCGTCACACTCATCACGGGTTTCC TCGGCTCAGGGAAGACAACCCTGCTGCGCAGCCTCCTAGCGCAAAAGCAG AACCTTCGTATCGCCACTCTGGTCAACGACCTCGGAGAATTCAACCACGA CGTGCAGTTGTTGGAGCTGGTTACGACTTCCTCCCTCAAGCCCATGCATC ACCCTCTCTCCCACCAGCCTGCCTCAGATCGCGTAATCGACCTGCACGGC AACTGTCTCTGCTGCTCAAATCTCCAGCAAGACATGCGACAGAATGTATG GGAATGCTTGCAAACGCCGGACGGAGAAGCCCGGGCTGTGGATTACCTGG TGATTGAAACGAGTGGTGTCACTGACCCGGAGACCCTTATTCGCGCCTTG GACGAGAAATTCGGAAAGATGACTCGCGCGCGCCTGGACAGTGTCGTGAC TGTGGTGGATGCGGATGTATTGTACTCCGAGCTGACTTCGTCTATGAATT GTGCGACAAAAGCCGCTCCTGATGATGATATTTCGGTGGTGGGAAGAGTA GGAGTATCTGCTCCACCACTTATGTCCACCGCACGGCGACACCAACTCGA ATGCGCCGATATCATTCTCCTCAACAAGATCGATCTCCTACAAGACTCTA GCCAACTAGATATTGTCGAAGCATGCTTGCAGACACTCAACCCACTTGCT CGTATTCATCGCACGCGCTATGCAGAGGTCCCTTTGCCCTGTGTCCTCGA CGTGGAGCTCCCAGATGTTGGGATAGGCCAGATGACACACGAGACGGGCA CTGCGAACTTCGCCACCCGCAATGCCTCTACACTTCGATCTCAGGCCTCG CGCAACGTAACCATCAGAAGGAAGGCGAATTGTTTGCTGACAGGATCCAC AGCTGCCTGTGCTGCTGATGCTCCGGCTTTGACGGACAAGAACCCGATGG CTACCCACCTCATCACTGATGGCCTCTCTGCTCTTACGTTTGAAAGCACC TGTCCATTCCTCCTGTACAAGCTCCAACATTTCTTCTCTCATGTTTTCCC TGCTGAGGCCGTGGTTCGCTGCAAAGGGTTTATGCACGTCAGGGACCTGC CCGGGAGGCGCGTGGCTCTAAGCATGAGCGGGCGTCGGCGTTTTCACGTC TCGGACGAAGGTCCATGGCAGTCGGCCCCGAAGACGCAACTGGTCTTTAT CGGCCACGAGCCCGGCTTTGATAAAGCAGTGGTCGAGATTGCATTGACAG AAGCTTGTGCAGGTTGGGATGGGAACGTGGAGAAAGGAGGAAATGATGAT GCCTCAGCCTCAGTTCAATTGGCGGCCAAAGTACGGGCCCTCGTCGCCCA GGATGAACGGATGGAATTGGTGGACCTCCACACACTCCTCGCACCTCTAC TGTTCCCGCGTATGCGAGACAAGGCCGAGGAGTCTATGTCCAGTCTGCCC GTGTGGGCGAACTGTTTGGTGGCATTTCGCTTGACCGGGGCGCCGTCCTT GGGCGTGACATCGGAGCACCTACGAATGACACACGGAGTGGATCTAAATG CAATGAGTCGGGCCTTGCAAGCGAAGGTTAATTTGGCCGGTGTGCTAGAA ATGCCACTCCTACATACGTTGCCATTCGGGGGGGGGGAAGAGGACGTGGC CTTGTGTTTTGTTGTGAAGGATGGGGAGGAAGCGGAGGGACGAGGGGAAA CGTACTATACCAAGGCGTGGGAGTGGATGGTGTCAGCGGCGGCCAACACT GTGACTTCTCGCTTCTTGGGTCACTTGAAGTTGTGCAAGTGCGGCCACTA A back to top
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