NO12G02490.1, NO12G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02490.1
Unique NameNO12G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1990
Alignment locationchr12:712172..714161 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:712172..714161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02490.1 vs.
Match: EWM25776.1 (Cobalamin (vitamin B12) biosynthesis CobW [Nannochloropsis gaditana])

HSP 1 Score: 703.4 bits (1814), Expect = 6.400e-199
Identity = 364/629 (57.87%), Postives = 466/629 (74.09%), Query Frame = 0
Query:    1 MVEPINLCLGYEQRVLDSLTRPFILPVTLITGFLGSGKTTLLRSLLAQKQNLRIATLVNDLGEFNHDVQLLELVTT--SSLKPMHHPLSH---------QPASDRVIDLHGNCLCCSNLQQDMRQNVWECLQTPDGEARAVDYLVIETSGVTDPETLIRALDEKFGKMTRARLDSVVTVVDADVLYSELTSSMNCATKAAPDD-DISVVGRVGVSAPPLMSTARRHQLECADIILLNKIDLLQDSSQLDIVEACLQTLNPLARIHRTRYAEVPLPCVLDVELPDVGIGQMTHETGTANFATRNASTLRSQASRNVTIRRKANCLLTGSTAACAADAPALTDKNPMATHLITDGLSALTFESTCPFLLYKLQHFFSHVFPAEAVVRCKGFMHVRDLPGRRVALSMSGRRRFHVSDEGPWQSAPKTQLVFIGHEPGFDKAVVEIALTEACAGWDGNVEKGGNDDASASVQLAAKVRALVAQDERMELVDLHTLLAPLLFPRM-RDKAEESMSSLPVWANCLVAFRLTGAPSLGVTSEHLRMTHGVDLNAMSRALQAKVNLAGVLEMPLLHTLPFGGGEEDVALCFVVKDGEEAEGRGETYYTKAWEWMVSAAANTVTSRFLGHLKLCKCGH 617
            M +PIN+C+ YEQR LD+LT PFILPVT+ITG+LGSGKTTLLR LL QK+NLRIA +VNDLG+FNHDVQLL+L  T  +S  P +H  S             SDR++DLHG+CLCCS+LQQ+MRQN+WECLQTP+ E RA+DYLVIETSGVTDPE +I+ALDEKFGKMTRARLDSVVT+VDADVL++EL  S    T A  D    ++   V  ++ P +   RR Q+ECAD+I+LNK DL++D + LD +EA L+ LNPLARIHRTR+A++PLPCVLDVELPD+G G MTHE   A +ATR  STLRS+ S+ V+ R +   L TG+       A A +D+N  + HL+++G+SA TFES  PFLL KLQ FFSHVFPAEAV+R KGF++VR+L GRRVALS+SGRRRFH+SDEG W SAP TQ+VFIG   G+ K+ ++ +L  AC   D       +D   AS  LAA++R ++A D+RME++D   +L PLL  ++ R+    +  SLP W +CLV FRLTGAPSLGVT++HLR+THGVDL+A++ +LQ KVN+AG+   PLL+TLPF G E  +ALCFVV++G   +G+G  Y++  WEW V+  A++V +R L HLKLCKCGH
Sbjct:    1 MTDPINMCMTYEQRTLDALTTPFILPVTIITGYLGSGKTTLLRKLLTQKKNLRIAAMVNDLGDFNHDVQLLQLEKTVANSSSPSNHGFSQAARLSPDKSNAPSDRIMDLHGSCLCCSHLQQEMRQNIWECLQTPEQEERAIDYLVIETSGVTDPERIIQALDEKFGKMTRARLDSVVTMVDADVLHAELVDS----TPAVRDTRGATLSAHVPSASHPGIPPTRRRQIECADVIILNKTDLVKDLAYLDDLEAFLRKLNPLARIHRTRFADLPLPCVLDVELPDLGAGSMTHEESNALYATRKVSTLRSEPSQAVSSRARKTDLFTGA-------ATAASDQNSRS-HLVSEGISAFTFESKSPFLLRKLQRFFSHVFPAEAVIRSKGFLYVRELAGRRVALSISGRRRFHLSDEGTWSSAPGTQVVFIGRLSGYQKSQIQTSLQNACKADDEETSFPLSDPHLASSSLAARIRDMIALDKRMEVMDARAILGPLLRQQLKRNYVGAAPHSLPSWVDCLVTFRLTGAPSLGVTADHLRLTHGVDLDALNISLQQKVNMAGIQGRPLLYTLPFDGEERGIALCFVVEEGNAEDGKGRAYFSSTWEW-VTLLADSVIARNLSHLKLCKCGH 616          
The following BLAST results are available for this feature:
BLAST of NO12G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25776.16.400e-19957.87Cobalamin (vitamin B12) biosynthesis CobW [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02490NO12G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02490.1NO12G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02490.1.cds1NO12G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp
CAGGTTGCGCTGGCCGTCACCATGGTCGAGCCCATCAATTTGTGTCTGGG
GTACGAACAGCGCGTGTTGGATTCCTTGACGCGACCTTTCATCTTGCCCG
TCACACTCATCACGGGTTTCCTCGGCTCAGGGAAGACAACCCTGCTGCGC
AGCCTCCTAGCGCAAAAGCAGAACCTTCGTATCGCCACTCTGGTCAACGA
CCTCGGAGAATTCAACCACGACGTGCAGTTGTTGGAGCTGGTTACGACTT
CCTCCCTCAAGCCCATGCATCACCCTCTCTCCCACCAGCCTGCCTCAGAT
CGCGTAATCGACCTGCACGGCAACTGTCTCTGCTGCTCAAATCTCCAGCA
AGACATGCGACAGAATGTATGGGAATGCTTGCAAACGCCGGACGGAGAAG
CCCGGGCTGTGGATTACCTGGTGATTGAAACGAGTGGTGTCACTGACCCG
GAGACCCTTATTCGCGCCTTGGACGAGAAATTCGGAAAGATGACTCGCGC
GCGCCTGGACAGTGTCGTGACTGTGGTGGATGCGGATGTATTGTACTCCG
AGCTGACTTCGTCTATGAATTGTGCGACAAAAGCCGCTCCTGATGATGAT
ATTTCGGTGGTGGGAAGAGTAGGAGTATCTGCTCCACCACTTATGTCCAC
CGCACGGCGACACCAACTCGAATGCGCCGATATCATTCTCCTCAACAAGA
TCGATCTCCTACAAGACTCTAGCCAACTAGATATTGTCGAAGCATGCTTG
CAGACACTCAACCCACTTGCTCGTATTCATCGCACGCGCTATGCAGAGGT
CCCTTTGCCCTGTGTCCTCGACGTGGAGCTCCCAGATGTTGGGATAGGCC
AGATGACACACGAGACGGGCACTGCGAACTTCGCCACCCGCAATGCCTCT
ACACTTCGATCTCAGGCCTCGCGCAACGTAACCATCAGAAGGAAGGCGAA
TTGTTTGCTGACAGGATCCACAGCTGCCTGTGCTGCTGATGCTCCGGCTT
TGACGGACAAGAACCCGATGGCTACCCACCTCATCACTGATGGCCTCTCT
GCTCTTACGTTTGAAAGCACCTGTCCATTCCTCCTGTACAAGCTCCAACA
TTTCTTCTCTCATGTTTTCCCTGCTGAGGCCGTGGTTCGCTGCAAAGGGT
TTATGCACGTCAGGGACCTGCCCGGGAGGCGCGTGGCTCTAAGCATGAGC
GGGCGTCGGCGTTTTCACGTCTCGGACGAAGGTCCATGGCAGTCGGCCCC
GAAGACGCAACTGGTCTTTATCGGCCACGAGCCCGGCTTTGATAAAGCAG
TGGTCGAGATTGCATTGACAGAAGCTTGTGCAGGTTGGGATGGGAACGTG
GAGAAAGGAGGAAATGATGATGCCTCAGCCTCAGTTCAATTGGCGGCCAA
AGTACGGGCCCTCGTCGCCCAGGATGAACGGATGGAATTGGTGGACCTCC
ACACACTCCTCGCACCTCTACTGTTCCCGCGTATGCGAGACAAGGCCGAG
GAGTCTATGTCCAGTCTGCCCGTGTGGGCGAACTGTTTGGTGGCATTTCG
CTTGACCGGGGCGCCGTCCTTGGGCGTGACATCGGAGCACCTACGAATGA
CACACGGAGTGGATCTAAATGCAATGAGTCGGGCCTTGCAAGCGAAGGTT
AATTTGGCCGGTGTGCTAGAAATGCCACTCCTACATACGTTGCCATTCGG
GGGGGGGGAAGAGGACGTGGCCTTGTGTTTTGTTGTGAAGGATGGGGAGG
AAGCGGAGGGACGAGGGGAAACGTACTATACCAAGGCGTGGGAGTGGATG
GTGTCAGCGGCGGCCAACACTGTGACTTCTCGCTTCTTGGGTCACTTGAA
GTTGTGCAAGTGCGGCCACTAAATTGTACAAATACCGCACATTATAACAG
AATGAAAGAAAACTTGTTGAACTATGTATCGGGGGACCATGTGAAGTCCG
CTCGCCAAACCATAAGCTCGCCGAGAATTGAAAAGTCATA
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protein sequence of NO12G02490.1

>NO12G02490.1-protein ID=NO12G02490.1-protein|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MVEPINLCLGYEQRVLDSLTRPFILPVTLITGFLGSGKTTLLRSLLAQKQ
NLRIATLVNDLGEFNHDVQLLELVTTSSLKPMHHPLSHQPASDRVIDLHG
NCLCCSNLQQDMRQNVWECLQTPDGEARAVDYLVIETSGVTDPETLIRAL
DEKFGKMTRARLDSVVTVVDADVLYSELTSSMNCATKAAPDDDISVVGRV
GVSAPPLMSTARRHQLECADIILLNKIDLLQDSSQLDIVEACLQTLNPLA
RIHRTRYAEVPLPCVLDVELPDVGIGQMTHETGTANFATRNASTLRSQAS
RNVTIRRKANCLLTGSTAACAADAPALTDKNPMATHLITDGLSALTFEST
CPFLLYKLQHFFSHVFPAEAVVRCKGFMHVRDLPGRRVALSMSGRRRFHV
SDEGPWQSAPKTQLVFIGHEPGFDKAVVEIALTEACAGWDGNVEKGGNDD
ASASVQLAAKVRALVAQDERMELVDLHTLLAPLLFPRMRDKAEESMSSLP
VWANCLVAFRLTGAPSLGVTSEHLRMTHGVDLNAMSRALQAKVNLAGVLE
MPLLHTLPFGGGEEDVALCFVVKDGEEAEGRGETYYTKAWEWMVSAAANT
VTSRFLGHLKLCKCGH*
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mRNA from alignment at chr12:712172..714161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at chr12:712172..714161- (Nannochloropsis oceanica)
CAGGTTGCGCTGGCCGTCACCATGGTCGAGCCCATCAATTTGTGTCTGGG GTACGAACAGCGCGTGTTGGATTCCTTGACGCGACCTTTCATCTTGCCCG TCACACTCATCACGGGTTTCCTCGGCTCAGGGAAGACAACCCTGCTGCGC AGCCTCCTAGCGCAAAAGCAGAACCTTCGTATCGCCACTCTGGTCAACGA CCTCGGAGAATTCAACCACGACGTGCAGTTGTTGGAGCTGGTTACGACTT CCTCCCTCAAGCCCATGCATCACCCTCTCTCCCACCAGCCTGCCTCAGAT CGCGTAATCGACCTGCACGGCAACTGTCTCTGCTGCTCAAATCTCCAGCA AGACATGCGACAGAATGTATGGGAATGCTTGCAAACGCCGGACGGAGAAG CCCGGGCTGTGGATTACCTGGTGATTGAAACGAGTGGTGTCACTGACCCG GAGACCCTTATTCGCGCCTTGGACGAGAAATTCGGAAAGATGACTCGCGC GCGCCTGGACAGTGTCGTGACTGTGGTGGATGCGGATGTATTGTACTCCG AGCTGACTTCGTCTATGAATTGTGCGACAAAAGCCGCTCCTGATGATGAT ATTTCGGTGGTGGGAAGAGTAGGAGTATCTGCTCCACCACTTATGTCCAC CGCACGGCGACACCAACTCGAATGCGCCGATATCATTCTCCTCAACAAGA TCGATCTCCTACAAGACTCTAGCCAACTAGATATTGTCGAAGCATGCTTG CAGACACTCAACCCACTTGCTCGTATTCATCGCACGCGCTATGCAGAGGT CCCTTTGCCCTGTGTCCTCGACGTGGAGCTCCCAGATGTTGGGATAGGCC AGATGACACACGAGACGGGCACTGCGAACTTCGCCACCCGCAATGCCTCT ACACTTCGATCTCAGGCCTCGCGCAACGTAACCATCAGAAGGAAGGCGAA TTGTTTGCTGACAGGATCCACAGCTGCCTGTGCTGCTGATGCTCCGGCTT TGACGGACAAGAACCCGATGGCTACCCACCTCATCACTGATGGCCTCTCT GCTCTTACGTTTGAAAGCACCTGTCCATTCCTCCTGTACAAGCTCCAACA TTTCTTCTCTCATGTTTTCCCTGCTGAGGCCGTGGTTCGCTGCAAAGGGT TTATGCACGTCAGGGACCTGCCCGGGAGGCGCGTGGCTCTAAGCATGAGC GGGCGTCGGCGTTTTCACGTCTCGGACGAAGGTCCATGGCAGTCGGCCCC GAAGACGCAACTGGTCTTTATCGGCCACGAGCCCGGCTTTGATAAAGCAG TGGTCGAGATTGCATTGACAGAAGCTTGTGCAGGTTGGGATGGGAACGTG GAGAAAGGAGGAAATGATGATGCCTCAGCCTCAGTTCAATTGGCGGCCAA AGTACGGGCCCTCGTCGCCCAGGATGAACGGATGGAATTGGTGGACCTCC ACACACTCCTCGCACCTCTACTGTTCCCGCGTATGCGAGACAAGGCCGAG GAGTCTATGTCCAGTCTGCCCGTGTGGGCGAACTGTTTGGTGGCATTTCG CTTGACCGGGGCGCCGTCCTTGGGCGTGACATCGGAGCACCTACGAATGA CACACGGAGTGGATCTAAATGCAATGAGTCGGGCCTTGCAAGCGAAGGTT AATTTGGCCGGTGTGCTAGAAATGCCACTCCTACATACGTTGCCATTCGG GGGGGGGGAAGAGGACGTGGCCTTGTGTTTTGTTGTGAAGGATGGGGAGG AAGCGGAGGGACGAGGGGAAACGTACTATACCAAGGCGTGGGAGTGGATG GTGTCAGCGGCGGCCAACACTGTGACTTCTCGCTTCTTGGGTCACTTGAA GTTGTGCAAGTGCGGCCACTAAATTGTACAAATACCGCACATTATAACAG AATGAAAGAAAACTTGTTGAACTATGTATCGGGGGACCATGTGAAGTCCG CTCGCCAAACCATAAGCTCGCCGAGAATTGAAAAGTCATA
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Coding sequence (CDS) from alignment at chr12:712172..714161-

>NO12G02490.1 ID=NO12G02490.1|Name=NO12G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr12:712172..714161- (Nannochloropsis oceanica)
ATGGTCGAGCCCATCAATTTGTGTCTGGGGTACGAACAGCGCGTGTTGGA
TTCCTTGACGCGACCTTTCATCTTGCCCGTCACACTCATCACGGGTTTCC
TCGGCTCAGGGAAGACAACCCTGCTGCGCAGCCTCCTAGCGCAAAAGCAG
AACCTTCGTATCGCCACTCTGGTCAACGACCTCGGAGAATTCAACCACGA
CGTGCAGTTGTTGGAGCTGGTTACGACTTCCTCCCTCAAGCCCATGCATC
ACCCTCTCTCCCACCAGCCTGCCTCAGATCGCGTAATCGACCTGCACGGC
AACTGTCTCTGCTGCTCAAATCTCCAGCAAGACATGCGACAGAATGTATG
GGAATGCTTGCAAACGCCGGACGGAGAAGCCCGGGCTGTGGATTACCTGG
TGATTGAAACGAGTGGTGTCACTGACCCGGAGACCCTTATTCGCGCCTTG
GACGAGAAATTCGGAAAGATGACTCGCGCGCGCCTGGACAGTGTCGTGAC
TGTGGTGGATGCGGATGTATTGTACTCCGAGCTGACTTCGTCTATGAATT
GTGCGACAAAAGCCGCTCCTGATGATGATATTTCGGTGGTGGGAAGAGTA
GGAGTATCTGCTCCACCACTTATGTCCACCGCACGGCGACACCAACTCGA
ATGCGCCGATATCATTCTCCTCAACAAGATCGATCTCCTACAAGACTCTA
GCCAACTAGATATTGTCGAAGCATGCTTGCAGACACTCAACCCACTTGCT
CGTATTCATCGCACGCGCTATGCAGAGGTCCCTTTGCCCTGTGTCCTCGA
CGTGGAGCTCCCAGATGTTGGGATAGGCCAGATGACACACGAGACGGGCA
CTGCGAACTTCGCCACCCGCAATGCCTCTACACTTCGATCTCAGGCCTCG
CGCAACGTAACCATCAGAAGGAAGGCGAATTGTTTGCTGACAGGATCCAC
AGCTGCCTGTGCTGCTGATGCTCCGGCTTTGACGGACAAGAACCCGATGG
CTACCCACCTCATCACTGATGGCCTCTCTGCTCTTACGTTTGAAAGCACC
TGTCCATTCCTCCTGTACAAGCTCCAACATTTCTTCTCTCATGTTTTCCC
TGCTGAGGCCGTGGTTCGCTGCAAAGGGTTTATGCACGTCAGGGACCTGC
CCGGGAGGCGCGTGGCTCTAAGCATGAGCGGGCGTCGGCGTTTTCACGTC
TCGGACGAAGGTCCATGGCAGTCGGCCCCGAAGACGCAACTGGTCTTTAT
CGGCCACGAGCCCGGCTTTGATAAAGCAGTGGTCGAGATTGCATTGACAG
AAGCTTGTGCAGGTTGGGATGGGAACGTGGAGAAAGGAGGAAATGATGAT
GCCTCAGCCTCAGTTCAATTGGCGGCCAAAGTACGGGCCCTCGTCGCCCA
GGATGAACGGATGGAATTGGTGGACCTCCACACACTCCTCGCACCTCTAC
TGTTCCCGCGTATGCGAGACAAGGCCGAGGAGTCTATGTCCAGTCTGCCC
GTGTGGGCGAACTGTTTGGTGGCATTTCGCTTGACCGGGGCGCCGTCCTT
GGGCGTGACATCGGAGCACCTACGAATGACACACGGAGTGGATCTAAATG
CAATGAGTCGGGCCTTGCAAGCGAAGGTTAATTTGGCCGGTGTGCTAGAA
ATGCCACTCCTACATACGTTGCCATTCGGGGGGGGGGAAGAGGACGTGGC
CTTGTGTTTTGTTGTGAAGGATGGGGAGGAAGCGGAGGGACGAGGGGAAA
CGTACTATACCAAGGCGTGGGAGTGGATGGTGTCAGCGGCGGCCAACACT
GTGACTTCTCGCTTCTTGGGTCACTTGAAGTTGTGCAAGTGCGGCCACTA
A
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Synonyms
Publications