NO12G02470.1, NO12G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02470.1
Unique NameNO12G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr12:703394..704269 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:703394..704269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02470.1 vs.
Match: EWM25775.1 (hypothetical protein Naga_100176g14 [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 4.300e-28
Identity = 110/307 (35.83%), Postives = 161/307 (52.44%), Query Frame = 0
Query:    1 MSQNWHLRQQRQRLLNSLPAAPARLFIKLLHSLPLEKGEREQEVKGGESGSSIDPAKATCRTVLGSRHMEEIRCLGTVVKHDEVNAGLWLDDGTGVVYVQLDKQA---LLPAVGELCEVMGPMKLVG----LSIDRGNQQQQPQISEV--------HRIIAAQRVFIPQDPNFETAFTLSTIDLFRTVYLAHTPPLS-LHETPCHVAANRPSPSPPSPPSPPPPQASSAPPSPSLPLSSSLSSSSASIDGMILSHILHLQSNGKAFNGVGVQALQGLVPSLPELEASLSRLQMEGLVYCMQGRFYPL 292
            M +N H +++ +  L SLPAAPAR+F+ L++SLP  + E  +EV+     S  D        +   RH+E IRC G V K +E  AG WLDDG+G+V V L ++    L+P +G+LCEV+G ++  G    +    G Q QQ +  E          R++ A  VF P+D N ETAF LS I   +    AH+   S   +T C  +A            P   +A+S+ P P+ P +S  S   + I   IL H     ++ +   G+  QAL+  + +  E++ASLSRLQ+EG VY M G F+PL
Sbjct:    1 MKRNRHQQEEWESFLQSLPAAPARIFVSLIYSLPRVQEEGREEVQRENRYSGTD----RLLLLWHGRHLENIRCHGIVTKREE-GAGFWLDDGSGLVQVLLGERVGKDLIPPLGQLCEVVGALRYAGKDTAIDASTGKQGQQMRNQEEDRRLTCARQRVVVAGHVFQPRDANAETAFMLSIISWLKKHSAAHSSSTSKALKTACLQSA-----------PPRLREAASSFPRPNPPSTSGPSDVDSRIMDAILRH-----TDRETKRGMTPQALEA-IAAPREVQASLSRLQVEGSVYEMHGAFFPL 285          
The following BLAST results are available for this feature:
BLAST of NO12G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25775.14.300e-2835.83hypothetical protein Naga_100176g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02470NO12G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02470.1NO12G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02470.1.cds1NO12G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02470.1 ID=NO12G02470.1|Name=NO12G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGAGTCAGAATTGGCACCTAAGACAACAGCGACAGCGCCTTCTTAATTC
TTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACTGCTCCACTCCCTCC
CTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGGGAGGGGAAAGTGGC
AGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACCGTCCTCGGCAGCCG
ACACATGGAAGAGATTCGATGCTTGGGGACGGTTGTGAAGCACGACGAGG
TGAATGCAGGGTTATGGCTTGATGATGGGACGGGAGTCGTCTATGTGCAG
CTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAGCTGTGTGAGGTGAT
GGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCGTGGAAATCAACAGC
AGCAGCCGCAGATATCTGAAGTCCACCGCATCATCGCGGCTCAGCGCGTG
TTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTCACCTTGTCGACCAT
AGACCTCTTCCGCACCGTTTATCTGGCCCACACCCCGCCTCTGTCTTTGC
ATGAGACCCCGTGTCATGTCGCAGCAAATAGACCATCTCCTTCTCCTCCT
TCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCTGCACCGCCCTCCCC
CTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATCCGCATCGATCGATG
GCATGATCCTAAGCCACATTTTGCACTTACAATCTAACGGGAAAGCCTTT
AACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTTCCCTCCCTGCCTGA
ATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGGGCTGGTCTATTGCA
TGCAAGGGCGTTTTTACCCGCTTTGA
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protein sequence of NO12G02470.1

>NO12G02470.1-protein ID=NO12G02470.1-protein|Name=NO12G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSQNWHLRQQRQRLLNSLPAAPARLFIKLLHSLPLEKGEREQEVKGGESG
SSIDPAKATCRTVLGSRHMEEIRCLGTVVKHDEVNAGLWLDDGTGVVYVQ
LDKQALLPAVGELCEVMGPMKLVGLSIDRGNQQQQPQISEVHRIIAAQRV
FIPQDPNFETAFTLSTIDLFRTVYLAHTPPLSLHETPCHVAANRPSPSPP
SPPSPPPPQASSAPPSPSLPLSSSLSSSSASIDGMILSHILHLQSNGKAF
NGVGVQALQGLVPSLPELEASLSRLQMEGLVYCMQGRFYPL*
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mRNA from alignment at chr12:703394..704269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02470.1 ID=NO12G02470.1|Name=NO12G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr12:703394..704269- (Nannochloropsis oceanica)
ATGAGTCAGAATTGGCACCTAAGACAACAGCGACAGCGCCTTCTTAATTC TTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACTGCTCCACTCCCTCC CTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGGGAGGGGAAAGTGGC AGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACCGTCCTCGGCAGCCG ACACATGGAAGAGATTCGATGCTTGGGGACGGTTGTGAAGCACGACGAGG TGAATGCAGGGTTATGGCTTGATGATGGGACGGGAGTCGTCTATGTGCAG CTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAGCTGTGTGAGGTGAT GGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCGTGGAAATCAACAGC AGCAGCCGCAGATATCTGAAGTCCACCGCATCATCGCGGCTCAGCGCGTG TTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTCACCTTGTCGACCAT AGACCTCTTCCGCACCGTTTATCTGGCCCACACCCCGCCTCTGTCTTTGC ATGAGACCCCGTGTCATGTCGCAGCAAATAGACCATCTCCTTCTCCTCCT TCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCTGCACCGCCCTCCCC CTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATCCGCATCGATCGATG GCATGATCCTAAGCCACATTTTGCACTTACAATCTAACGGGAAAGCCTTT AACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTTCCCTCCCTGCCTGA ATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGGGCTGGTCTATTGCA TGCAAGGGCGTTTTTACCCGCTTTGA
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Coding sequence (CDS) from alignment at chr12:703394..704269-

>NO12G02470.1 ID=NO12G02470.1|Name=NO12G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr12:703394..704269- (Nannochloropsis oceanica)
ATGAGTCAGAATTGGCACCTAAGACAACAGCGACAGCGCCTTCTTAATTC
TTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACTGCTCCACTCCCTCC
CTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGGGAGGGGAAAGTGGC
AGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACCGTCCTCGGCAGCCG
ACACATGGAAGAGATTCGATGCTTGGGGACGGTTGTGAAGCACGACGAGG
TGAATGCAGGGTTATGGCTTGATGATGGGACGGGAGTCGTCTATGTGCAG
CTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAGCTGTGTGAGGTGAT
GGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCGTGGAAATCAACAGC
AGCAGCCGCAGATATCTGAAGTCCACCGCATCATCGCGGCTCAGCGCGTG
TTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTCACCTTGTCGACCAT
AGACCTCTTCCGCACCGTTTATCTGGCCCACACCCCGCCTCTGTCTTTGC
ATGAGACCCCGTGTCATGTCGCAGCAAATAGACCATCTCCTTCTCCTCCT
TCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCTGCACCGCCCTCCCC
CTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATCCGCATCGATCGATG
GCATGATCCTAAGCCACATTTTGCACTTACAATCTAACGGGAAAGCCTTT
AACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTTCCCTCCCTGCCTGA
ATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGGGCTGGTCTATTGCA
TGCAAGGGCGTTTTTACCCGCTTTGA
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Synonyms
Publications