NO12G02430.1, NO12G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02430.1
Unique NameNO12G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr12:698127..699427 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:698127..699427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02430.1 vs.
Match: EWM25814.1 (rna terminal phosphate cyclase-like 1 [Nannochloropsis gaditana])

HSP 1 Score: 623.2 bits (1606), Expect = 4.900e-175
Identity = 299/356 (83.99%), Postives = 330/356 (92.70%), Query Frame = 0 
Query:    1 MSTIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGAEGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            MST+K KG ++FRQRLVCATLSGRPLLIT IR+++EEPGLRDFEG FLRLLERLTNGCQVEINETGTVLRYVPGII GGRH HDCG+ARSI WFLEGILPLAVF K+PL LSL+GLTND+ DVSVDN K  ILP+L++FGAEGA L VKKRGLPPSGGG V F+CPIVREL+PCNLVDAGLI+RVRGVAYCAK+SPQFANRVVTSARGLLNRLLPDV+VHTDHYKG AGG SPG+GL+LVAESTTGCL+A+DVHA+EG+LPE++G+RGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVS+VR+GQL+ H IQTLRL REAFGV FKIRAD ETGTVLLSCLG GV+N SKKVT
Sbjct:    1 MSTMKFKGCNNFRQRLVCATLSGRPLLITHIRSEEEEPGLRDFEGGFLRLLERLTNGCQVEINETGTVLRYVPGIIVGGRHEHDCGSARSISWFLEGILPLAVFAKQPLHLSLSGLTNDSFDVSVDNVKAVILPILAFFGAEGATLNVKKRGLPPSGGGHVEFSCPIVRELRPCNLVDAGLIKRVRGVAYCAKISPQFANRVVTSARGLLNRLLPDVYVHTDHYKGLAGGHSPGFGLTLVAESTTGCLLAVDVHAKEGALPEDVGERGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSKVRIGQLTMHGIQTLRLAREAFGVTFKIRADTETGTVLLSCLGSGVRNFSKKVT 356
The following BLAST results are available for this feature:
BLAST of NO12G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25814.14.900e-17583.99rna terminal phosphate cyclase-like 1 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02430NO12G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02430.1NO12G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02430.1.cds1NO12G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02430.1 ID=NO12G02430.1|Name=NO12G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
GAACGCCATACAAATACAGGCAACAACAAGCAGAGAGAGACGTATCCCCC
TACTCCACTGGCCACGCTCCACCCCCCATCTCCCACCCAACAACTCTTCC
GAATCGTCTCAAAGCCAACCCATAATGTCGACGATAAAACTTAAGGGGTC
CAGCCACTTCCGACAGCGTCTCGTATGTGCCACGCTGAGTGGACGGCCCT
TGCTTATCACCCAGATACGGGCCGACGACGAGGAGCCCGGCTTGCGGGAC
TTCGAAGGAAGCTTCTTGCGGCTGCTGGAGCGTCTTACAAACGGGTGCCA
GGTGGAGATCAATGAGACCGGCACGGTACTACGCTATGTCCCAGGCATTA
TTACGGGCGGACGGCACGCCCATGATTGCGGGACAGCTCGGTCGATCGGC
TGGTTTTTGGAGGGCATTTTGCCCTTGGCCGTGTTTGGGAAGGAGCCGTT
GGCTTTGTCCTTGACAGGACTGACCAACGATACTCTCGATGTCTCTGTGG
ATAACTTTAAAGGGGCAATACTTCCCCTGCTATCGTACTTTGGTGCGGAA
GGTGCGGACCTCAAGGTCAAAAAGCGGGGCTTGCCCCCATCTGGAGGAGG
GTTGGTAGTGTTTACATGTCCAATCGTGCGGGAGCTGCAGCCATGCAATT
TAGTGGACGCGGGATTGATAAGACGTGTTAGAGGGGTGGCATATTGTGCC
AAAGTTTCTCCTCAATTCGCCAATCGCGTCGTGACCTCTGCAAGGGGGCT
GCTAAATCGATTATTGCCTGATGTGTTTGTGCACACGGATCATTACAAGG
GAGCGGCGGGGGGTGAGAGTCCCGGGTATGGTTTAAGTTTAGTAGCAGAG
AGCACAACGGGTTGTCTGGTGGCGATCGATGTTCACGCAGAGGAAGGGTC
ATTGCCGGAGGAGATTGGGCAGCGAGGGAGTGCGTTGTTGCTTGAGGAAG
TGAGAAGGGGTGGCTGTGTGGATTCGGTCGGGCAGGCGTTAGTGTTGTTG
TTAATGGCGCTCGGACCCGAGGATGTGTCAAGGGTACGAGTTGGTCAACT
GTCATCGCATGCGATTCAAACGTTACGCTTGGTGAGGGAGGCATTTGGGG
TAATCTTCAAGATTCGCGCAGACAGGGAGACAGGGACTGTGCTGCTGTCG
TGTTTGGGGAGGGGGGTGAAGAATATCAGTAAAAAGGTTACGTAAATTTA
AGGAGGAAATTAACAAGAGGAGATCGAGGTCTATAAAACTTTTTCAAAGC
CCAAAAGGCAGAAGGAGAAAGAAGGTCAGCAAATTATTGGCGAAAAGCGG
A
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protein sequence of NO12G02430.1

>NO12G02430.1-protein ID=NO12G02430.1-protein|Name=NO12G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSTIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRL
LERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILP
LAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGAEGADLKVKK
RGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFAN
RVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVA
IDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPED
VSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKN
ISKKVT*
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mRNA from alignment at chr12:698127..699427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02430.1 ID=NO12G02430.1|Name=NO12G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at chr12:698127..699427+ (Nannochloropsis oceanica)
GAACGCCATACAAATACAGGCAACAACAAGCAGAGAGAGACGTATCCCCC
TACTCCACTGGCCACGCTCCACCCCCCATCTCCCACCCAACAACTCTTCC
GAATCGTCTCAAAGCCAACCCATAATGTCGACGATAAAACTTAAGGGGTC
CAGCCACTTCCGACAGCGTCTCGTATGTGCCACGCTGAGTGGACGGCCCT
TGCTTATCACCCAGATACGGGCCGACGACGAGGAGCCCGGCTTGCGGGAC
TTCGAAGGAAGCTTCTTGCGGCTGCTGGAGCGTCTTACAAACGGGTGCCA
GGTGGAGATCAATGAGACCGGCACGGTACTACGCTATGTCCCAGGCATTA
TTACGGGCGGACGGCACGCCCATGATTGCGGGACAGCTCGGTCGATCGGC
TGGTTTTTGGAGGGCATTTTGCCCTTGGCCGTGTTTGGGAAGGAGCCGTT
GGCTTTGTCCTTGACAGGACTGACCAACGATACTCTCGATGTCTCTGTGG
ATAACTTTAAAGGGGCAATACTTCCCCTGCTATCGTACTTTGGTGCGGAA
GGTGCGGACCTCAAGGTCAAAAAGCGGGGCTTGCCCCCATCTGGAGGAGG
GTTGGTAGTGTTTACATGTCCAATCGTGCGGGAGCTGCAGCCATGCAATT
TAGTGGACGCGGGATTGATAAGACGTGTTAGAGGGGTGGCATATTGTGCC
AAAGTTTCTCCTCAATTCGCCAATCGCGTCGTGACCTCTGCAAGGGGGCT
GCTAAATCGATTATTGCCTGATGTGTTTGTGCACACGGATCATTACAAGG
GAGCGGCGGGGGGTGAGAGTCCCGGGTATGGTTTAAGTTTAGTAGCAGAG
AGCACAACGGGTTGTCTGGTGGCGATCGATGTTCACGCAGAGGAAGGGTC
ATTGCCGGAGGAGATTGGGCAGCGAGGGAGTGCGTTGTTGCTTGAGGAAG
TGAGAAGGGGTGGCTGTGTGGATTCGGTCGGGCAGGCGTTAGTGTTGTTG
TTAATGGCGCTCGGACCCGAGGATGTGTCAAGGGTACGAGTTGGTCAACT
GTCATCGCATGCGATTCAAACGTTACGCTTGGTGAGGGAGGCATTTGGGG
TAATCTTCAAGATTCGCGCAGACAGGGAGACAGGGACTGTGCTGCTGTCG
TGTTTGGGGAGGGGGGTGAAGAATATCAGTAAAAAGGTTACGTAAATTTA
AGGAGGAAATTAACAAGAGGAGATCGAGGTCTATAAAACTTTTTCAAAGC
CCAAAAGGCAGAAGGAGAAAGAAGGTCAGCAAATTATTGGCGAAAAGCGG
A
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Coding sequence (CDS) from alignment at chr12:698127..699427+

>NO12G02430.1 ID=NO12G02430.1|Name=NO12G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr12:698127..699427+ (Nannochloropsis oceanica)
ATGTCGACGATAAAACTTAAGGGGTCCAGCCACTTCCGACAGCGTCTCGT
ATGTGCCACGCTGAGTGGACGGCCCTTGCTTATCACCCAGATACGGGCCG
ACGACGAGGAGCCCGGCTTGCGGGACTTCGAAGGAAGCTTCTTGCGGCTG
CTGGAGCGTCTTACAAACGGGTGCCAGGTGGAGATCAATGAGACCGGCAC
GGTACTACGCTATGTCCCAGGCATTATTACGGGCGGACGGCACGCCCATG
ATTGCGGGACAGCTCGGTCGATCGGCTGGTTTTTGGAGGGCATTTTGCCC
TTGGCCGTGTTTGGGAAGGAGCCGTTGGCTTTGTCCTTGACAGGACTGAC
CAACGATACTCTCGATGTCTCTGTGGATAACTTTAAAGGGGCAATACTTC
CCCTGCTATCGTACTTTGGTGCGGAAGGTGCGGACCTCAAGGTCAAAAAG
CGGGGCTTGCCCCCATCTGGAGGAGGGTTGGTAGTGTTTACATGTCCAAT
CGTGCGGGAGCTGCAGCCATGCAATTTAGTGGACGCGGGATTGATAAGAC
GTGTTAGAGGGGTGGCATATTGTGCCAAAGTTTCTCCTCAATTCGCCAAT
CGCGTCGTGACCTCTGCAAGGGGGCTGCTAAATCGATTATTGCCTGATGT
GTTTGTGCACACGGATCATTACAAGGGAGCGGCGGGGGGTGAGAGTCCCG
GGTATGGTTTAAGTTTAGTAGCAGAGAGCACAACGGGTTGTCTGGTGGCG
ATCGATGTTCACGCAGAGGAAGGGTCATTGCCGGAGGAGATTGGGCAGCG
AGGGAGTGCGTTGTTGCTTGAGGAAGTGAGAAGGGGTGGCTGTGTGGATT
CGGTCGGGCAGGCGTTAGTGTTGTTGTTAATGGCGCTCGGACCCGAGGAT
GTGTCAAGGGTACGAGTTGGTCAACTGTCATCGCATGCGATTCAAACGTT
ACGCTTGGTGAGGGAGGCATTTGGGGTAATCTTCAAGATTCGCGCAGACA
GGGAGACAGGGACTGTGCTGCTGTCGTGTTTGGGGAGGGGGGTGAAGAAT
ATCAGTAAAAAGGTTACGTAA
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Synonyms
Publications