NO12G02320.1, NO12G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02320.1
Unique NameNO12G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr12:666385..667904 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:666385..667904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02320.1 vs.
Match: OEU19849.1 (putative clathrin coat assembly protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 226.1 bits (575), Expect = 1.200e-55
Identity = 110/152 (72.37%), Postives = 131/152 (86.18%), Query Frame = 0 
Query:  103 IRFLLLQNRQGKTRLSKWYVPPPT----------EAEKFRLEAEVHKLIVSRDRKYTNFVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYE 245
            IRF LLQNRQGKTRLSKWY+PPPT          EAEK R+EAEVH+L+ +RD+KYTNF+E+ NYKLIYRRYAGL+F++ VDV DNEL+YLE+IHLFVELLD +F NVCELDIVFNFNKVYSILDEF+LAGE++ETSKREIL+R++ M+  E
Sbjct:   12 IRFFLLQNRQGKTRLSKWYIPPPTTTSTGTSTTAEAEKTRIEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLETIHLFVELLDAYFSNVCELDIVFNFNKVYSILDEFMLAGEMEETSKREILDRVKFMEKME 163
The following BLAST results are available for this feature:
BLAST of NO12G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU19849.11.200e-5572.37putative clathrin coat assembly protein [Fragilari... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02320NO12G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02320.1NO12G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02320.1.cds1NO12G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02320.1.cds2NO12G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02320.1.cds3NO12G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02320.1 ID=NO12G02320.1|Name=NO12G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
CCCCTGTAGCTCCTCCTTCACCCACCCCTCTCTTTTTCTAAGACTCACAT
CAAAAATACACACCCCTGGCTGCCCGCAGGGCGGGCATACCCGCTAATAT
GTTTATATGTTATGTCTTTCATGTTTATGTTGCGCGCCATCGAAAATTAT
TCTCTGGTTTTTTTTTATCACGGTCATCGTGGAGAAAGTAATGAATGGAA
GATGACAACCAAGTTGAAGGCGAGAAAAGTCATTCTTTCTGTCTGTCTTC
CCCTCGTGCATCCTGGTAACCAAATAATTTGATCTTGCGCGGTTTGAAGA
TTCGAATGAAGAATGCTGATGCCGAGTGTAAAAATATGCGACGATGAGAC
CTGCGCAGTCAAAACGCTATGGCCCACTGCCTTTGCCGTCTCAGGTACCC
AGTGTCAGCCACAAGCTTTCACTCGTCTTCTTCATGTGCCCTGTGTTCGG
CGGTGGTGGTCGTCCACATCCATGATGGAAATGGGCCGCGCGGACGCGAT
GCCATCAGTGATGGAAAGCAAACCACCGTCTGTCGCTCTGATCTCATCTC
GGGCCCAGGTTCCTTGCGTGCATGTCCTTATCTGCCCCGGCTCACCCATC
TTGCTCCATTCTCGTCAATCTTAACCACGAGAACAGACAGAAACGAGTGC
ACGGAGAGCGCACGTCAAGAGATGATCCGCTTCTTGCTTCTGCAGAATCG
GCAGGGCAAGACGCGACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGG
CGGAGAAGTTCCGTCTTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGG
GACCGCAAGTACACCAACTTTGTGGAGCACCAGAACTACAAGCTCATTTA
CCGGCGTTATGCGGGCTTGTACTTTTCCCTGGGTGTGGATGTGACGGACA
ACGAGCTTGCCTACCTCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGAC
GAATTCTTCCGCAACGTCTGCGAGCTCGACATCGTCTTCAATTTCAACAA
GGTGTACTCTATTTTGGACGAGTTCATCTTGGCGGGCGAGATTCAGGAGA
CAAGCAAGCGGGAAATTTTAGAACGGATCCGGGACATGCAGGCCTATGAG
AAAGCCTCGGAGAAGTGAAAGTCGAATCCGGAAAAATACAGCTAAACGTT
GGGGGGAAAGGAGGAAAGCATGATGCATGCGTGTAACCGCCCCATTTTTG
TAAAGAAGAATCAAAAAATGTCTGTAAAGCAGGAAA
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protein sequence of NO12G02320.1

>NO12G02320.1-protein ID=NO12G02320.1-protein|Name=NO12G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MAHCLCRLRYPVSATSFHSSSSCALCSAVVVVHIHDGNGPRGRDAISDGK
QTTVCRSDLISGPGSLRACPYLPRLTHLAPFSSILTTRTDRNECTESARQ
EMIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTN
FVEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNV
CELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYEKASEK*
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mRNA from alignment at chr12:666385..667904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02320.1 ID=NO12G02320.1|Name=NO12G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr12:666385..667904- (Nannochloropsis oceanica)
CCCCTGTAGCTCCTCCTTCACCCACCCCTCTCTTTTTCTAAGACTCACAT
CAAAAATACACACCCCTGGCTGCCCGCAGGGCGGGCATACCCGCTAATAT
GTTTATATGTTATGTCTTTCATGTTTATGTTGCGCGCCATCGAAAATTAT
TCTCTGGTTTTTTTTTATCACGGTCATCGTGGAGAAAGTAATGAATGGAA
GATGACAACCAAGTTGAAGGCGAGAAAAGTCATTCTTTCTGTCTGTCTTC
CCCTCGTGCATCCTGGTAACCAAATAATTTGATCTTGCGCGGTTTGAAGA
TTCGAATGAAGAATGCTGATGCCGAGTGTAAAAATATGCGACGATGAGAC
CTGCGCAGTCAAAACGCTATGGCCCACTGCCTTTGCCGTCTCAGGTACCC
AGTGTCAGCCACAAGCTTTCACTCGTCTTCTTCATGTGCCCTGTGTTCGG
CGGTGGTGGTCGTCCACATCCATGATGGAAATGGGCCGCGCGGACGCGAT
GCCATCAGTGATGGAAAGCAAACCACCGTCTGTCGCTCTGATCTCATCTC
GGGCCCAGGTTCCTTGCGTGCATGTCCTTATCTGCCCCGGCTCACCCATC
TTGCTCCATTCTCGTCAATCTTAACCACGAGAACAGACAGAAACGAGTGC
ACGGAGAGCGCACGTCAAGAGATGGTAAGTGTTGACTGCTTGCCGTGCCC
ATCATCGCCAAGGACTTTCAAGACGCCGGCTGCTTTCCATGTCTCACCAC
CTGTTCCACCCATGCTCATGATCATACCATCACACACGCCCTTAAACGCT
TTCCTTTAGATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGCAAGACGCG
ACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAAGTTCCGTC
TTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCAAGTACACC
AACTTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGTTATGCGGG
CTTGTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCTTGCCTACC
TCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCTTCCGCAAC
GTCTGCGAGCTCGACATCGTCTTCAATTTCAACAAGGTCAGTAAGAGAAG
GGGGGCAAGGTGACTGAGCAGGACGGTTTACGACTCAGTTTGGTTGTATC
GCCGACGTTCATCATTGCCTGCGTCCTTCGTTTCCCAGCTCGCTCTCACG
TACGTTCTTACTGACCCCTGCACTAACACTTACAGGTGTACTCTATTTTG
GACGAGTTCATCTTGGCGGGCGAGATTCAGGAGACAAGCAAGCGGGAAAT
TTTAGAACGGATCCGGGACATGCAGGCCTATGAGAAAGCCTCGGAGAAGT
GAAAGTCGAATCCGGAAAAATACAGCTAAACGTTGGGGGGAAAGGAGGAA
AGCATGATGCATGCGTGTAACCGCCCCATTTTTGTAAAGAAGAATCAAAA
AATGTCTGTAAAGCAGGAAA
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Coding sequence (CDS) from alignment at chr12:666385..667904-

>NO12G02320.1 ID=NO12G02320.1|Name=NO12G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr12:666385..667904- (Nannochloropsis oceanica)
ATGGCCCACTGCCTTTGCCGTCTCAGGTACCCAGTGTCAGCCACAAGCTT
TCACTCGTCTTCTTCATGTGCCCTGTGTTCGGCGGTGGTGGTCGTCCACA
TCCATGATGGAAATGGGCCGCGCGGACGCGATGCCATCAGTGATGGAAAG
CAAACCACCGTCTGTCGCTCTGATCTCATCTCGGGCCCAGGTTCCTTGCG
TGCATGTCCTTATCTGCCCCGGCTCACCCATCTTGCTCCATTCTCGTCAA
TCTTAACCACGAGAACAGACAGAAACGAGTGCACGGAGAGCGCACGTCAA
GAGATGATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGCAAGACGCGACT
GTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAAGTTCCGTCTTG
AGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCAAGTACACCAAC
TTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGTTATGCGGGCTT
GTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCTTGCCTACCTCG
AGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCTTCCGCAACGTC
TGCGAGCTCGACATCGTCTTCAATTTCAACAAGGTGTACTCTATTTTGGA
CGAGTTCATCTTGGCGGGCGAGATTCAGGAGACAAGCAAGCGGGAAATTT
TAGAACGGATCCGGGACATGCAGGCCTATGAGAAAGCCTCGGAGAAGTGA
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Synonyms
Publications