NO12G02290.1, NO12G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02290.1
Unique NameNO12G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr12:652531..653837 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:652531..653837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02290.1 vs.
Match: EWM25804.1 (NTP pyrophosphohydrolase MazG, putative catalytic core [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 4.300e-69
Identity = 141/249 (56.63%), Postives = 180/249 (72.29%), Query Frame = 0 
Query:   17 TLELFRQSVSCSFPPVSPISIPLLCLDVAQKTGLLAEVLQWKNEDIC--LENDENLRKKVQVTAGGLLVSVLRFSEECEIDLGAAAVAKIDLNGRKYPATLVKGQAHKYDHYSSQTGIKKQGQSIGESLSIFKSPPWEC-IRISRLQAILREFVAEREWGKYHAPRNLLLALVGEMGELCEIVK-TMSGPPASWPRAAKDELAQEVADVFIYLLRFGDVCNIDFREGLVETVAAEAARQIASRKQEKGD 262
            ++E  RQ+V  +   +S I I  LCLDVA K GLLAE+LQWK+E++   + +D     K+Q+ AG LLVS+LR S   EIDLGAAAVAKIDLN RKYPA   KG AHKYD+Y++QTGIKK+GQS+G    IF+ PPW+  + IS LQ  L+ FV ER W KYH PRNLLLAL+GE+GELCEIV+ T +G   SWP+A K+EL QE+ADVFIYLLRF DVC +D  +G+   +A+ A +Q+AS++    D
Sbjct:   13 SIEFLRQAVQDTLK-LSIIPITGLCLDVAHKAGLLAEILQWKSEEVTALVYDDIEFCHKMQIAAGELLVSILRLSAHSEIDLGAAAVAKIDLNARKYPAQFCKGLAHKYDYYTAQTGIKKEGQSLGPEDQIFRPPPWDARLTISDLQTSLQAFVLERNWEKYHTPRNLLLALIGEVGELCEIVQATPAGDSRSWPQAFKNELGQEIADVFIYLLRFADVCRLDLAKGMEIAIASGADKQLASKRHVIAD 260
The following BLAST results are available for this feature:
BLAST of NO12G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25804.14.300e-6956.63NTP pyrophosphohydrolase MazG, putative catalytic ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02290NO12G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02290.1NO12G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02290.1.cds1NO12G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02290.1.cds2NO12G02290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02290.1 ID=NO12G02290.1|Name=NO12G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
ATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGATTAACGGTAC
CTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCCCCGTTTCTC
CGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAGACGGGCTTG
CTGGCAGAAGTTTTGCAATGGAAGAACGAGGACATATGTTTGGAGAATGA
CGAGAATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGCTGTTGGTGA
GTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGGGCAGCGGCG
GTAGCCAAGATCGATTTGAACGGCCGCAAGTACCCCGCTACTCTCGTGAA
GGGTCAGGCGCACAAGTATGACCATTACAGTTCCCAAACAGGCATCAAAA
AGCAGGGCCAGAGTATTGGCGAGTCTCTTTCAATTTTCAAGTCTCCTCCC
TGGGAGTGTATCAGGATAAGCAGGCTCCAGGCCATCTTACGAGAATTCGT
GGCAGAGCGAGAATGGGGCAAGTACCACGCGCCTCGCAATCTGTTGCTGG
CCTTGGTAGGAGAGATGGGTGAACTTTGCGAGATTGTGAAGACCATGAGT
GGTCCACCGGCTTCATGGCCTCGGGCTGCCAAGGATGAGTTGGCCCAAGA
GGTGGCGGATGTTTTTATTTATCTACTGCGATTCGGGGACGTGTGCAATA
TCGACTTTAGGGAAGGCTTGGTAGAAACCGTCGCTGCCGAGGCCGCCCGA
CAAATTGCTTCGAGGAAGCAGGAAAAGGGAGACAGGGAGACGCATAGTGA
GCAAAAGAAAGAGAGGTGGTGGTTCGCTTCTTCCACTTGGGTAGTGAGTG
GCATGCGATGGCGGATGAGGAGGCCGTGGAGGGAGGGAGAAAAGGTTTCT
GAGGTCGCCGTGGAGCTTGTGCTGTCGCTACTCGCTGCTGCCACCGCCGC
GTGTGTGGGCGCAGCTATATTGAAGAAGCGATAG
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protein sequence of NO12G02290.1

>NO12G02290.1-protein ID=NO12G02290.1-protein|Name=NO12G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGRSQPNNGDDIGINGTLELFRQSVSCSFPPVSPISIPLLCLDVAQKTGL
LAEVLQWKNEDICLENDENLRKKVQVTAGGLLVSVLRFSEECEIDLGAAA
VAKIDLNGRKYPATLVKGQAHKYDHYSSQTGIKKQGQSIGESLSIFKSPP
WECIRISRLQAILREFVAEREWGKYHAPRNLLLALVGEMGELCEIVKTMS
GPPASWPRAAKDELAQEVADVFIYLLRFGDVCNIDFREGLVETVAAEAAR
QIASRKQEKGDRETHSEQKKERWWFASSTWVVSGMRWRMRRPWREGEKVS
EVAVELVLSLLAAATAACVGAAILKKR*
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mRNA from alignment at chr12:652531..653837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02290.1 ID=NO12G02290.1|Name=NO12G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp|location=Sequence derived from alignment at chr12:652531..653837- (Nannochloropsis oceanica)
ATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGATTAACGGTAC
CTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCCCCGTTTCTC
CGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAGACGGGCTTG
CTGGCAGAAGTTTTGCAATGGAAGAACGAGGACATATGTTTGGAGAATGA
CGAGAATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGCTGTTGGTGA
GTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGGGCAGCGGCG
GTAGCCAAGATCGATTTGAACGGCCGCAAGTAAGTGTGAGGAAAGATAAG
GGTCACAGTGCAGAAGTTTCTGAGATGTGTATGCGAGCACCTTTGTCCGA
GCAACTATGTCCGAAGATCGCCTGCACGTATGTCCGAAGATGGCCTGCAC
TTGCTTTCCCCTCCCAGTGAGCACAGGGTGTATGTTCTATTTTTATCACT
TTTAAGAGGAGGAATGTGGTGAAATGTGGCTTGGCACATTTTTCTAATGA
TTCAACTATGGTGCCCTGATCCACATCATTTACGGAATTATCTTCTTTAC
TGCTCTCCTTTTCATCACACCGTCTTCTCCCCCGCCTCCCCTTTTTTCTC
AGGTACCCCGCTACTCTCGTGAAGGGTCAGGCGCACAAGTATGACCATTA
CAGTTCCCAAACAGGCATCAAAAAGCAGGGCCAGAGTATTGGCGAGTCTC
TTTCAATTTTCAAGTCTCCTCCCTGGGAGTGTATCAGGATAAGCAGGCTC
CAGGCCATCTTACGAGAATTCGTGGCAGAGCGAGAATGGGGCAAGTACCA
CGCGCCTCGCAATCTGTTGCTGGCCTTGGTAGGAGAGATGGGTGAACTTT
GCGAGATTGTGAAGACCATGAGTGGTCCACCGGCTTCATGGCCTCGGGCT
GCCAAGGATGAGTTGGCCCAAGAGGTGGCGGATGTTTTTATTTATCTACT
GCGATTCGGGGACGTGTGCAATATCGACTTTAGGGAAGGCTTGGTAGAAA
CCGTCGCTGCCGAGGCCGCCCGACAAATTGCTTCGAGGAAGCAGGAAAAG
GGAGACAGGGAGACGCATAGTGAGCAAAAGAAAGAGAGGTGGTGGTTCGC
TTCTTCCACTTGGGTAGTGAGTGGCATGCGATGGCGGATGAGGAGGCCGT
GGAGGGAGGGAGAAAAGGTTTCTGAGGTCGCCGTGGAGCTTGTGCTGTCG
CTACTCGCTGCTGCCACCGCCGCGTGTGTGGGCGCAGCTATATTGAAGAA
GCGATAG
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Coding sequence (CDS) from alignment at chr12:652531..653837-

>NO12G02290.1 ID=NO12G02290.1|Name=NO12G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr12:652531..653837- (Nannochloropsis oceanica)
ATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGATTAACGGTAC
CTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCCCCGTTTCTC
CGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAGACGGGCTTG
CTGGCAGAAGTTTTGCAATGGAAGAACGAGGACATATGTTTGGAGAATGA
CGAGAATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGCTGTTGGTGA
GTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGGGCAGCGGCG
GTAGCCAAGATCGATTTGAACGGCCGCAAGTACCCCGCTACTCTCGTGAA
GGGTCAGGCGCACAAGTATGACCATTACAGTTCCCAAACAGGCATCAAAA
AGCAGGGCCAGAGTATTGGCGAGTCTCTTTCAATTTTCAAGTCTCCTCCC
TGGGAGTGTATCAGGATAAGCAGGCTCCAGGCCATCTTACGAGAATTCGT
GGCAGAGCGAGAATGGGGCAAGTACCACGCGCCTCGCAATCTGTTGCTGG
CCTTGGTAGGAGAGATGGGTGAACTTTGCGAGATTGTGAAGACCATGAGT
GGTCCACCGGCTTCATGGCCTCGGGCTGCCAAGGATGAGTTGGCCCAAGA
GGTGGCGGATGTTTTTATTTATCTACTGCGATTCGGGGACGTGTGCAATA
TCGACTTTAGGGAAGGCTTGGTAGAAACCGTCGCTGCCGAGGCCGCCCGA
CAAATTGCTTCGAGGAAGCAGGAAAAGGGAGACAGGGAGACGCATAGTGA
GCAAAAGAAAGAGAGGTGGTGGTTCGCTTCTTCCACTTGGGTAGTGAGTG
GCATGCGATGGCGGATGAGGAGGCCGTGGAGGGAGGGAGAAAAGGTTTCT
GAGGTCGCCGTGGAGCTTGTGCTGTCGCTACTCGCTGCTGCCACCGCCGC
GTGTGTGGGCGCAGCTATATTGAAGAAGCGATAG
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Synonyms
Publications