NO12G02210.1, NO12G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02210.1
Unique NameNO12G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr12:632338..634139 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:632338..634139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02210.1 vs.
Match: XP_005856114.1 (hypothetical protein NGA_0333410 [Nannochloropsis gaditana CCMP526]; EKU20250.1 hypothetical protein NGA_0333410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 757.7 bits (1955), Expect = 2.400e-215
Identity = 377/517 (72.92%), Postives = 429/517 (82.98%), Query Frame = 0 
Query:    5 STILLVVLTFLSVVSLYSFHLLGSGYARALDRHNSLLWLCRAPTLKRRGLSLSMS-TSTGSGSTSSSISNSGNSDKETGSRTMDPELRYFLTVKTHTNISQIAEEEWNSMLRFEDSPFLHHQWLNCMETSGCAIPATGWNPCHLTIRMVKGKDGEVTDPNDPGDLVAAAPVYIKTHSMGEFIFDNEWANAAYRSGIDYYPKVLCAVPFTPASGARLLLKQGLSQPMQQEIRRMVGVFLQELAKNNEFSSVHVNFCQEEEVAPLSATSPPYLHRTSMQFHWRNENKDKEGAPYDSFDEYLAAFRSKRRIKIKKERRTVYE-AGLTLDVYRGKEIPDSFFDDDTIFKLYVSTIDKLFYGRQYLNEEFFRMLKEKFRDPLCLVVAKDAKGEIVAGTFNVIGNDKRFYGRYWGCVLPEEIKNLHFETCYYKSIEYCIEKGLAAMEPGAGNSDFKFMRGFEPAQVHSMHHIVHPGLRQAVDDFLKYERREVAGTVDYLSGKSAVRA-RGGKGAEEGEEEGNG 519
            S  LL  L FL V++L++F      + +A+ + + L +   +  L RR  S SM  TSTG           G+S+KE    TM+ E +YFLTVKTHTNISQI  EEWNS+LRFEDSPFL H+W +C+E SGCA+PATGWNPCHLTIRMV G+ GEV + +DPG+LVAAAPVYIKTHSMGEFIFDNEWA+AAYRSG+DYYPKVL AVPFTPASGARLLLK+GLSQPMQ+EIRRMVG FLQ+LAK+N FSSVHVNFC+EEE+  L    PPYLHRTSMQFHW N NKDK+G PY SFDEYL+AFRSKRRIKIKKERR++YE AGLTL V RG++IPDS+FD D IFKLYVSTIDKLFYGRQYLNE FFR+LK+KFR+PLCLV+A+DA GE+VAGTFNVI NDKRFYGRYWGCV PE+IKNLHFETCYYKSIEYCIE GLAAMEPGAGNSDFKFMRGFEP  VHSMHH+VHPGLRQAVDDFL+YERREV+GTV+YLS KSAVR  R G+G E G+  G G
Sbjct:    4 SRCLLTTLGFLQVINLHAFFWHVCPHIQAVQQRH-LSFDPHSSMLSRRRDSFSMMVTSTG-----------GSSEKEAA--TMERETQYFLTVKTHTNISQIQAEEWNSLLRFEDSPFLQHEWFDCLEASGCAVPATGWNPCHLTIRMVTGRGGEVAESDDPGELVAAAPVYIKTHSMGEFIFDNEWASAAYRSGLDYYPKVLVAVPFTPASGARLLLKRGLSQPMQREIRRMVGGFLQDLAKSNGFSSVHVNFCEEEEIGALQEAQPPYLHRTSMQFHWVNRNKDKDGLPYSSFDEYLSAFRSKRRIKIKKERRSIYEDAGLTLQVLRGRDIPDSYFDSDLIFKLYVSTIDKLFYGRQYLNEAFFRLLKDKFREPLCLVLARDAGGEVVAGTFNVISNDKRFYGRYWGCVAPEDIKNLHFETCYYKSIEYCIEAGLAAMEPGAGNSDFKFMRGFEPVHVHSMHHLVHPGLRQAVDDFLQYERREVSGTVEYLSEKSAVRGRRDGQGGEGGQAPGEG 506
The following BLAST results are available for this feature:
BLAST of NO12G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856114.12.400e-21572.92hypothetical protein NGA_0333410 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02210NO12G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02210.1NO12G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02210.1.cds1NO12G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02210.1.cds2NO12G02210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02210.1 ID=NO12G02210.1|Name=NO12G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGCCGCGTCTGAGCACCATACTGCTCGTTGTGCTCACATTCCTTTCGGT
AGTAAGCCTCTATAGTTTTCACCTGCTCGGCAGCGGGTATGCTCGAGCTC
TTGATCGGCACAATAGTTTATTATGGTTATGCAGAGCACCAACATTGAAG
CGGCGCGGCTTATCCTTGTCCATGAGCACCAGCACTGGCAGTGGCAGTAC
CAGCAGCAGCATTAGCAACAGTGGGAACAGCGATAAAGAGACTGGGTCAA
GGACCATGGACCCTGAGTTGCGGTATTTTTTGACTGTCAAAACCCACACC
AATATATCCCAAATCGCGGAGGAAGAATGGAATTCCATGCTGCGTTTCGA
AGACTCACCCTTCTTGCACCACCAATGGCTGAATTGCATGGAGACTAGTG
GATGCGCCATTCCGGCCACAGGGTGGAACCCGTGTCATCTCACCATTCGC
ATGGTCAAGGGCAAGGATGGAGAAGTCACAGACCCCAATGATCCTGGAGA
TTTGGTGGCAGCTGCACCAGTATACATTAAGACACACAGCATGGGCGAGT
TTATTTTTGACAATGAATGGGCGAATGCCGCCTATCGCTCCGGCATCGAC
TATTACCCGAAAGTTCTATGTGCGGTACCTTTTACTCCGGCCTCCGGCGC
CCGGCTGCTGCTCAAGCAAGGCTTATCTCAACCGATGCAGCAGGAAATCA
GGCGGATGGTTGGAGTGTTTTTGCAAGAGCTGGCGAAGAACAACGAGTTT
TCATCGGTCCACGTGAATTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAG
TGCCACCTCCCCTCCCTACTTGCACCGGACCTCCATGCAATTTCACTGGA
GGAACGAGAATAAGGACAAGGAAGGGGCGCCGTATGACAGTTTCGACGAG
TACTTGGCGGCGTTTCGGAGCAAGCGGAGGATAAAGATCAAGAAGGAAAG
GAGGACTGTTTACGAGGCCGGTCTCACGTTAGACGTCTACAGGGGGAAGG
AGATACCAGATAGTTTCTTTGATGACGACACAATCTTCAAACTGTACGTG
AGCACGATTGACAAGCTGTTTTATGGGCGGCAATATTTGAATGAAGAATT
CTTCCGGATGCTCAAGGAGAAATTTCGGGACCCGTTATGCTTGGTGGTTG
CCAAGGATGCAAAGGGGGAGATCGTGGCTGGGACCTTCAATGTGATCGGT
AATGACAAGCGATTCTATGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGA
AATTAAAAACTTGCACTTTGAGACGTGTTACTACAAGTCGATTGAGTACT
GTATCGAGAAAGGCTTGGCCGCCATGGAGCCGGGAGCGGGAAATTCCGAC
TTCAAGTTTATGCGAGGCTTTGAGCCGGCCCAGGTGCACTCAATGCATCA
CATTGTCCACCCCGGATTACGGCAAGCGGTTGACGACTTTTTGAAGTACG
AAAGGAGGGAAGTAGCGGGCACGGTGGATTACTTGAGTGGGAAGAGCGCT
GTGCGGGCCAGGGGAGGGAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAA
TGGGAAGATGGAATTGTGA
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protein sequence of NO12G02210.1

>NO12G02210.1-protein ID=NO12G02210.1-protein|Name=NO12G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MPRLSTILLVVLTFLSVVSLYSFHLLGSGYARALDRHNSLLWLCRAPTLK
RRGLSLSMSTSTGSGSTSSSISNSGNSDKETGSRTMDPELRYFLTVKTHT
NISQIAEEEWNSMLRFEDSPFLHHQWLNCMETSGCAIPATGWNPCHLTIR
MVKGKDGEVTDPNDPGDLVAAAPVYIKTHSMGEFIFDNEWANAAYRSGID
YYPKVLCAVPFTPASGARLLLKQGLSQPMQQEIRRMVGVFLQELAKNNEF
SSVHVNFCQEEEVAPLSATSPPYLHRTSMQFHWRNENKDKEGAPYDSFDE
YLAAFRSKRRIKIKKERRTVYEAGLTLDVYRGKEIPDSFFDDDTIFKLYV
STIDKLFYGRQYLNEEFFRMLKEKFRDPLCLVVAKDAKGEIVAGTFNVIG
NDKRFYGRYWGCVLPEEIKNLHFETCYYKSIEYCIEKGLAAMEPGAGNSD
FKFMRGFEPAQVHSMHHIVHPGLRQAVDDFLKYERREVAGTVDYLSGKSA
VRARGGKGAEEGEEEGNGKMEL*
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mRNA from alignment at chr12:632338..634139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02210.1 ID=NO12G02210.1|Name=NO12G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1802bp|location=Sequence derived from alignment at chr12:632338..634139+ (Nannochloropsis oceanica)
ATGCCGCGTCTGAGCACCATACTGCTCGTTGTGCTCACATTCCTTTCGGT
GAGTCGGCACACCAGCATTTTTCTTCTCGCCTGCCCCTCCCCCCTCTTCA
TATGCGTGTCGGCACCCGTCCCATTGACCACGAGACACGCTGTCAAATGA
TGACCGCCACAGGACAAGCTATATGAATTCGCTATCTCACTGCTACCATT
CTCCAACTTTATTAGTCACATCCTCATTTCTCCCGCGTCTCCCTCAACCC
CCCTCCTCTTCTGCGTACCCTACTTCTTCAGGTAGTAAGCCTCTATAGTT
TTCACCTGCTCGGCAGCGGGTATGCTCGAGCTCTTGATCGGCACAATAGT
TTATTATGGTTATGCAGAGCACCAACATTGAAGCGGCGCGGCTTATCCTT
GTCCATGAGCACCAGCACTGGCAGTGGCAGTACCAGCAGCAGCATTAGCA
ACAGTGGGAACAGCGATAAAGAGACTGGGTCAAGGACCATGGACCCTGAG
TTGCGGTATTTTTTGACTGTCAAAACCCACACCAATATATCCCAAATCGC
GGAGGAAGAATGGAATTCCATGCTGCGTTTCGAAGACTCACCCTTCTTGC
ACCACCAATGGCTGAATTGCATGGAGACTAGTGGATGCGCCATTCCGGCC
ACAGGGTGGAACCCGTGTCATCTCACCATTCGCATGGTCAAGGGCAAGGA
TGGAGAAGTCACAGACCCCAATGATCCTGGAGATTTGGTGGCAGCTGCAC
CAGTATACATTAAGACACACAGCATGGGCGAGTTTATTTTTGACAATGAA
TGGGCGAATGCCGCCTATCGCTCCGGCATCGACTATTACCCGAAAGTTCT
ATGTGCGGTACCTTTTACTCCGGCCTCCGGCGCCCGGCTGCTGCTCAAGC
AAGGCTTATCTCAACCGATGCAGCAGGAAATCAGGCGGATGGTTGGAGTG
TTTTTGCAAGAGCTGGCGAAGAACAACGAGTTTTCATCGGTCCACGTGAA
TTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAGTGCCACCTCCCCTCCCT
ACTTGCACCGGACCTCCATGCAATTTCACTGGAGGAACGAGAATAAGGAC
AAGGAAGGGGCGCCGTATGACAGTTTCGACGAGTACTTGGCGGCGTTTCG
GAGCAAGCGGAGGATAAAGATCAAGAAGGAAAGGAGGACTGTTTACGAGG
CCGGTCTCACGTTAGACGTCTACAGGGGGAAGGAGATACCAGATAGTTTC
TTTGATGACGACACAATCTTCAAACTGTACGTGAGCACGATTGACAAGCT
GTTTTATGGGCGGCAATATTTGAATGAAGAATTCTTCCGGATGCTCAAGG
AGAAATTTCGGGACCCGTTATGCTTGGTGGTTGCCAAGGATGCAAAGGGG
GAGATCGTGGCTGGGACCTTCAATGTGATCGGTAATGACAAGCGATTCTA
TGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGAAATTAAAAACTTGCACT
TTGAGACGTGTTACTACAAGTCGATTGAGTACTGTATCGAGAAAGGCTTG
GCCGCCATGGAGCCGGGAGCGGGAAATTCCGACTTCAAGTTTATGCGAGG
CTTTGAGCCGGCCCAGGTGCACTCAATGCATCACATTGTCCACCCCGGAT
TACGGCAAGCGGTTGACGACTTTTTGAAGTACGAAAGGAGGGAAGTAGCG
GGCACGGTGGATTACTTGAGTGGGAAGAGCGCTGTGCGGGCCAGGGGAGG
GAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAATGGGAAGATGGAATTGT
GA
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Coding sequence (CDS) from alignment at chr12:632338..634139+

>NO12G02210.1 ID=NO12G02210.1|Name=NO12G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr12:632338..634139+ (Nannochloropsis oceanica)
ATGCCGCGTCTGAGCACCATACTGCTCGTTGTGCTCACATTCCTTTCGGT
AGTAAGCCTCTATAGTTTTCACCTGCTCGGCAGCGGGTATGCTCGAGCTC
TTGATCGGCACAATAGTTTATTATGGTTATGCAGAGCACCAACATTGAAG
CGGCGCGGCTTATCCTTGTCCATGAGCACCAGCACTGGCAGTGGCAGTAC
CAGCAGCAGCATTAGCAACAGTGGGAACAGCGATAAAGAGACTGGGTCAA
GGACCATGGACCCTGAGTTGCGGTATTTTTTGACTGTCAAAACCCACACC
AATATATCCCAAATCGCGGAGGAAGAATGGAATTCCATGCTGCGTTTCGA
AGACTCACCCTTCTTGCACCACCAATGGCTGAATTGCATGGAGACTAGTG
GATGCGCCATTCCGGCCACAGGGTGGAACCCGTGTCATCTCACCATTCGC
ATGGTCAAGGGCAAGGATGGAGAAGTCACAGACCCCAATGATCCTGGAGA
TTTGGTGGCAGCTGCACCAGTATACATTAAGACACACAGCATGGGCGAGT
TTATTTTTGACAATGAATGGGCGAATGCCGCCTATCGCTCCGGCATCGAC
TATTACCCGAAAGTTCTATGTGCGGTACCTTTTACTCCGGCCTCCGGCGC
CCGGCTGCTGCTCAAGCAAGGCTTATCTCAACCGATGCAGCAGGAAATCA
GGCGGATGGTTGGAGTGTTTTTGCAAGAGCTGGCGAAGAACAACGAGTTT
TCATCGGTCCACGTGAATTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAG
TGCCACCTCCCCTCCCTACTTGCACCGGACCTCCATGCAATTTCACTGGA
GGAACGAGAATAAGGACAAGGAAGGGGCGCCGTATGACAGTTTCGACGAG
TACTTGGCGGCGTTTCGGAGCAAGCGGAGGATAAAGATCAAGAAGGAAAG
GAGGACTGTTTACGAGGCCGGTCTCACGTTAGACGTCTACAGGGGGAAGG
AGATACCAGATAGTTTCTTTGATGACGACACAATCTTCAAACTGTACGTG
AGCACGATTGACAAGCTGTTTTATGGGCGGCAATATTTGAATGAAGAATT
CTTCCGGATGCTCAAGGAGAAATTTCGGGACCCGTTATGCTTGGTGGTTG
CCAAGGATGCAAAGGGGGAGATCGTGGCTGGGACCTTCAATGTGATCGGT
AATGACAAGCGATTCTATGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGA
AATTAAAAACTTGCACTTTGAGACGTGTTACTACAAGTCGATTGAGTACT
GTATCGAGAAAGGCTTGGCCGCCATGGAGCCGGGAGCGGGAAATTCCGAC
TTCAAGTTTATGCGAGGCTTTGAGCCGGCCCAGGTGCACTCAATGCATCA
CATTGTCCACCCCGGATTACGGCAAGCGGTTGACGACTTTTTGAAGTACG
AAAGGAGGGAAGTAGCGGGCACGGTGGATTACTTGAGTGGGAAGAGCGCT
GTGCGGGCCAGGGGAGGGAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAA
TGGGAAGATGGAATTGTGA
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Synonyms
Publications