NO12G02190.1, NO12G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02190.1
Unique NameNO12G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1710
Alignment locationchr12:629169..630878 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:629169..630878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02190.1 vs.
Match: EWM25838.1 (misato-like protein [Nannochloropsis gaditana])

HSP 1 Score: 420.6 bits (1080), Expect = 7.600e-114
Identity = 273/577 (47.31%), Postives = 330/577 (57.19%), Query Frame = 0 
Query:    1 MKEVLTIQAGHYANWVGTHFWNMQMEDLVVEEDKGEHKNGQEGARQPPQTRF--------RRRSKILTEAGNPRLLLFDVAQEIDPFRGPYHQHSRPQQPPSTGKLDKEKTTLPWDGAIEVHHLAPPATRPRQQPSTEAQGKPSPSFSSPNPSFWSTAWRGAPLDVTRNCVVVQEYEDDSVNKGSGSVGAGRGEDQLHRLLEECDAPQGLQLLLDLARPALGLGVSAAEEFMEEVGRGALACYAYNPPFNTGSRKQDATRVADTALGIKALLETGALLIPSAMDAVLPSSSPSKKFVGVVDVYGSSALQATALEAVSGVYRAVDEGGDVGSCHMREWVHGIRSGACSLAAVELGLPFPRAGAGIEEEMITSRGALDHVLRPKADEGTCSNNRNSNDSSGLPHTGFLDHLISLAPRTRITRTTKMEGSSSGAMESGSFIQRRRLTAITSMYGLPLPVHVVRDSLDEALKCYSWFQPHLNFVSSTRLPVHRLPSTLSFQCPGREQRVVDSTG---ASCFSLIGCTSAVAPFLEEIASTFAERGPVVRQRLLEERGLLSEDLGEVDAMLADLLESGIQRD 567
            MKEVLTIQ G YANWVG HFWN+Q+ D           +G + A   P   F         RRSK+ TEAG PRLLLFDV +EI+ F    ++ S  QQ   + +L KEK  L WDGA +VH +   A+  R +P     G  S   S P P+ WS AWRG  LD  R+CV   +  D ++  G+G+ G  RG DQLHRLLEECDA QGL LLLDLA PA  LGVSAA+EF EEV  G +ACYA+  P +  SR QD    AD ALG+KALLE G LLIPS+ D  LP         G  + Y +SA+QATALEAVSGVYR  +        HMREW  GIR GA  LAAVE+G                 RG        KA  G     R+ +  +  P   FL  L+SLAPR+ +  +  +             ++RRRL+ + S YG   P   VR SL+EALK   W QPHLNFVS   LP   LP  L    PG  Q   D+TG    S  SLIGCTSAV PF+E+I  +FA RGP +R+RL EERGLL EDLGEVDA+LAD+LE+G+ R+
Sbjct:   92 MKEVLTIQVGSYANWVGAHFWNLQLTD-----------SGLKEAPDTPVVSFDNHTCPFAHRRSKVYTEAGRPRLLLFDVREEINYFCSRQYE-SHDQQESYSAQLGKEKAALLWDGATQVHEMGR-ASVARDRPPRAVHGIGSLGQSPPIPASWSQAWRGETLDPERHCVEAGKAHDMAL--GAGAWGPDRGADQLHRLLEECDAVQGLHLLLDLAGPASSLGVSAAQEFAEEVRGGVVACYAFAAPDSPPSRGQDDWGKADAALGVKALLEAGCLLIPSSRDPGLPEG-----LAGSSEAYRTSAVQATALEAVSGVYREDER------VHMREWAQGIRVGAWDLAAVEIG-----------------RGDEAPDAWWKARPGP--EGRDKSQDTATPSAKFLSSLVSLAPRSHVRSSAFVADP----------VRRRRLSGLASAYGFRSPPWAVRTSLEEALKDCHWLQPHLNFVSPDPLP---LPPPL----PGLGQ-AEDATGLEKGSAVSLIGCTSAVGPFVEDITESFAGRGPGLRRRLREERGLLEEDLGEVDALLADVLETGVPRE 605
The following BLAST results are available for this feature:
BLAST of NO12G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25838.17.600e-11447.31misato-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02190NO12G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02190.1NO12G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02190.1.cds1NO12G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02190.1 ID=NO12G02190.1|Name=NO12G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp
ATGAAGGAGGTTCTGACCATCCAAGCAGGCCACTATGCCAATTGGGTCGG
GACACATTTTTGGAACATGCAGATGGAGGACCTGGTTGTGGAGGAGGATA
AGGGCGAGCACAAGAATGGCCAGGAAGGCGCCCGTCAGCCGCCGCAGACC
CGATTCCGGCGGCGCAGCAAAATCCTGACCGAGGCGGGCAACCCACGTCT
CCTCCTGTTTGACGTGGCTCAAGAAATCGACCCATTCCGAGGACCCTACC
ACCAGCACAGTCGGCCACAACAACCTCCGTCAACGGGGAAGCTAGACAAG
GAAAAGACGACCTTACCCTGGGACGGGGCGATTGAGGTCCATCACCTTGC
GCCGCCCGCGACACGACCACGGCAACAGCCGTCCACTGAAGCTCAGGGTA
AGCCATCACCGTCTTTCTCATCCCCAAACCCAAGCTTTTGGTCCACGGCG
TGGCGAGGAGCTCCCTTAGACGTGACGCGGAATTGCGTGGTGGTGCAAGA
GTACGAAGATGACAGTGTCAACAAGGGGAGCGGAAGCGTGGGGGCTGGCC
GGGGTGAAGACCAACTACACCGCTTGCTCGAAGAATGCGATGCTCCCCAA
GGTCTGCAACTTTTGCTGGACCTGGCGCGACCTGCCTTGGGGTTGGGGGT
GAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGGAAGGGGAGCCCTAGCAT
GCTACGCCTATAACCCCCCTTTCAACACCGGTTCCCGGAAGCAAGACGCC
ACCCGTGTTGCCGACACGGCACTTGGCATTAAGGCCTTGCTAGAGACAGG
AGCTTTGCTGATACCGTCTGCGATGGACGCTGTCCTACCCTCATCCTCTC
CTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCTACGGCAGCAGCGCTTTG
CAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTGTACCGAGCAGTCGACGA
AGGAGGCGATGTGGGTAGTTGTCATATGCGGGAGTGGGTGCATGGGATTC
GCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGCTAGGGTTGCCTTTCCCG
CGGGCGGGAGCGGGGATAGAGGAAGAGATGATTACGTCTCGAGGGGCGCT
GGACCACGTGCTTCGACCAAAAGCAGACGAAGGCACGTGTAGCAACAACA
GAAATAGCAATGATAGCTCTGGCCTCCCCCACACTGGATTTTTGGACCAC
TTGATCTCCTTGGCCCCGCGGACAAGGATCACAAGGACGACCAAAATGGA
AGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAGCTTCATCCAACGACGGC
GTCTCACAGCCATTACCAGCATGTATGGTCTTCCCCTTCCGGTGCATGTC
GTGCGCGATTCGCTCGACGAGGCTCTAAAATGCTATTCTTGGTTTCAACC
TCATCTCAACTTTGTCTCCTCCACCCGGCTACCTGTCCATCGACTCCCTT
CCACTCTCTCCTTTCAATGCCCGGGGCGAGAGCAGCGCGTGGTAGACTCT
ACAGGGGCTAGTTGCTTCTCACTCATTGGGTGTACGTCCGCCGTAGCTCC
GTTTTTGGAAGAAATCGCAAGTACGTTTGCGGAAAGGGGTCCCGTGGTGC
GCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGAGCGAGGATTTGGGAGAG
GTGGATGCCATGCTGGCCGATTTGCTAGAGAGTGGGATACAGCGAGATGT
AGAACTGTGA
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protein sequence of NO12G02190.1

>NO12G02190.1-protein ID=NO12G02190.1-protein|Name=NO12G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MKEVLTIQAGHYANWVGTHFWNMQMEDLVVEEDKGEHKNGQEGARQPPQT
RFRRRSKILTEAGNPRLLLFDVAQEIDPFRGPYHQHSRPQQPPSTGKLDK
EKTTLPWDGAIEVHHLAPPATRPRQQPSTEAQGKPSPSFSSPNPSFWSTA
WRGAPLDVTRNCVVVQEYEDDSVNKGSGSVGAGRGEDQLHRLLEECDAPQ
GLQLLLDLARPALGLGVSAAEEFMEEVGRGALACYAYNPPFNTGSRKQDA
TRVADTALGIKALLETGALLIPSAMDAVLPSSSPSKKFVGVVDVYGSSAL
QATALEAVSGVYRAVDEGGDVGSCHMREWVHGIRSGACSLAAVELGLPFP
RAGAGIEEEMITSRGALDHVLRPKADEGTCSNNRNSNDSSGLPHTGFLDH
LISLAPRTRITRTTKMEGSSSGAMESGSFIQRRRLTAITSMYGLPLPVHV
VRDSLDEALKCYSWFQPHLNFVSSTRLPVHRLPSTLSFQCPGREQRVVDS
TGASCFSLIGCTSAVAPFLEEIASTFAERGPVVRQRLLEERGLLSEDLGE
VDAMLADLLESGIQRDVEL*
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mRNA from alignment at chr12:629169..630878+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02190.1 ID=NO12G02190.1|Name=NO12G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp|location=Sequence derived from alignment at chr12:629169..630878+ (Nannochloropsis oceanica)
ATGAAGGAGGTTCTGACCATCCAAGCAGGCCACTATGCCAATTGGGTCGG
GACACATTTTTGGAACATGCAGATGGAGGACCTGGTTGTGGAGGAGGATA
AGGGCGAGCACAAGAATGGCCAGGAAGGCGCCCGTCAGCCGCCGCAGACC
CGATTCCGGCGGCGCAGCAAAATCCTGACCGAGGCGGGCAACCCACGTCT
CCTCCTGTTTGACGTGGCTCAAGAAATCGACCCATTCCGAGGACCCTACC
ACCAGCACAGTCGGCCACAACAACCTCCGTCAACGGGGAAGCTAGACAAG
GAAAAGACGACCTTACCCTGGGACGGGGCGATTGAGGTCCATCACCTTGC
GCCGCCCGCGACACGACCACGGCAACAGCCGTCCACTGAAGCTCAGGGTA
AGCCATCACCGTCTTTCTCATCCCCAAACCCAAGCTTTTGGTCCACGGCG
TGGCGAGGAGCTCCCTTAGACGTGACGCGGAATTGCGTGGTGGTGCAAGA
GTACGAAGATGACAGTGTCAACAAGGGGAGCGGAAGCGTGGGGGCTGGCC
GGGGTGAAGACCAACTACACCGCTTGCTCGAAGAATGCGATGCTCCCCAA
GGTCTGCAACTTTTGCTGGACCTGGCGCGACCTGCCTTGGGGTTGGGGGT
GAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGGAAGGGGAGCCCTAGCAT
GCTACGCCTATAACCCCCCTTTCAACACCGGTTCCCGGAAGCAAGACGCC
ACCCGTGTTGCCGACACGGCACTTGGCATTAAGGCCTTGCTAGAGACAGG
AGCTTTGCTGATACCGTCTGCGATGGACGCTGTCCTACCCTCATCCTCTC
CTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCTACGGCAGCAGCGCTTTG
CAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTGTACCGAGCAGTCGACGA
AGGAGGCGATGTGGGTAGTTGTCATATGCGGGAGTGGGTGCATGGGATTC
GCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGCTAGGGTTGCCTTTCCCG
CGGGCGGGAGCGGGGATAGAGGAAGAGATGATTACGTCTCGAGGGGCGCT
GGACCACGTGCTTCGACCAAAAGCAGACGAAGGCACGTGTAGCAACAACA
GAAATAGCAATGATAGCTCTGGCCTCCCCCACACTGGATTTTTGGACCAC
TTGATCTCCTTGGCCCCGCGGACAAGGATCACAAGGACGACCAAAATGGA
AGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAGCTTCATCCAACGACGGC
GTCTCACAGCCATTACCAGCATGTATGGTCTTCCCCTTCCGGTGCATGTC
GTGCGCGATTCGCTCGACGAGGCTCTAAAATGCTATTCTTGGTTTCAACC
TCATCTCAACTTTGTCTCCTCCACCCGGCTACCTGTCCATCGACTCCCTT
CCACTCTCTCCTTTCAATGCCCGGGGCGAGAGCAGCGCGTGGTAGACTCT
ACAGGGGCTAGTTGCTTCTCACTCATTGGGTGTACGTCCGCCGTAGCTCC
GTTTTTGGAAGAAATCGCAAGTACGTTTGCGGAAAGGGGTCCCGTGGTGC
GCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGAGCGAGGATTTGGGAGAG
GTGGATGCCATGCTGGCCGATTTGCTAGAGAGTGGGATACAGCGAGATGT
AGAACTGTGA
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Coding sequence (CDS) from alignment at chr12:629169..630878+

>NO12G02190.1 ID=NO12G02190.1|Name=NO12G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr12:629169..630878+ (Nannochloropsis oceanica)
ATGAAGGAGGTTCTGACCATCCAAGCAGGCCACTATGCCAATTGGGTCGG
GACACATTTTTGGAACATGCAGATGGAGGACCTGGTTGTGGAGGAGGATA
AGGGCGAGCACAAGAATGGCCAGGAAGGCGCCCGTCAGCCGCCGCAGACC
CGATTCCGGCGGCGCAGCAAAATCCTGACCGAGGCGGGCAACCCACGTCT
CCTCCTGTTTGACGTGGCTCAAGAAATCGACCCATTCCGAGGACCCTACC
ACCAGCACAGTCGGCCACAACAACCTCCGTCAACGGGGAAGCTAGACAAG
GAAAAGACGACCTTACCCTGGGACGGGGCGATTGAGGTCCATCACCTTGC
GCCGCCCGCGACACGACCACGGCAACAGCCGTCCACTGAAGCTCAGGGTA
AGCCATCACCGTCTTTCTCATCCCCAAACCCAAGCTTTTGGTCCACGGCG
TGGCGAGGAGCTCCCTTAGACGTGACGCGGAATTGCGTGGTGGTGCAAGA
GTACGAAGATGACAGTGTCAACAAGGGGAGCGGAAGCGTGGGGGCTGGCC
GGGGTGAAGACCAACTACACCGCTTGCTCGAAGAATGCGATGCTCCCCAA
GGTCTGCAACTTTTGCTGGACCTGGCGCGACCTGCCTTGGGGTTGGGGGT
GAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGGAAGGGGAGCCCTAGCAT
GCTACGCCTATAACCCCCCTTTCAACACCGGTTCCCGGAAGCAAGACGCC
ACCCGTGTTGCCGACACGGCACTTGGCATTAAGGCCTTGCTAGAGACAGG
AGCTTTGCTGATACCGTCTGCGATGGACGCTGTCCTACCCTCATCCTCTC
CTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCTACGGCAGCAGCGCTTTG
CAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTGTACCGAGCAGTCGACGA
AGGAGGCGATGTGGGTAGTTGTCATATGCGGGAGTGGGTGCATGGGATTC
GCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGCTAGGGTTGCCTTTCCCG
CGGGCGGGAGCGGGGATAGAGGAAGAGATGATTACGTCTCGAGGGGCGCT
GGACCACGTGCTTCGACCAAAAGCAGACGAAGGCACGTGTAGCAACAACA
GAAATAGCAATGATAGCTCTGGCCTCCCCCACACTGGATTTTTGGACCAC
TTGATCTCCTTGGCCCCGCGGACAAGGATCACAAGGACGACCAAAATGGA
AGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAGCTTCATCCAACGACGGC
GTCTCACAGCCATTACCAGCATGTATGGTCTTCCCCTTCCGGTGCATGTC
GTGCGCGATTCGCTCGACGAGGCTCTAAAATGCTATTCTTGGTTTCAACC
TCATCTCAACTTTGTCTCCTCCACCCGGCTACCTGTCCATCGACTCCCTT
CCACTCTCTCCTTTCAATGCCCGGGGCGAGAGCAGCGCGTGGTAGACTCT
ACAGGGGCTAGTTGCTTCTCACTCATTGGGTGTACGTCCGCCGTAGCTCC
GTTTTTGGAAGAAATCGCAAGTACGTTTGCGGAAAGGGGTCCCGTGGTGC
GCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGAGCGAGGATTTGGGAGAG
GTGGATGCCATGCTGGCCGATTTGCTAGAGAGTGGGATACAGCGAGATGT
AGAACTGTGA
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Synonyms
Publications