NO12G02180.1, NO12G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02180.1
Unique NameNO12G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1665
Alignment locationchr12:626969..628633 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:626969..628633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G02180.1 vs.
Match: EWM25824.1 (c2h2 zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 699.1 bits (1803), Expect = 1.100e-197
Identity = 366/534 (68.54%), Postives = 413/534 (77.34%), Query Frame = 0 
Query:    3 NPATRLPAAVATDNGQPTPPSSTSTTAGLEQSAWTAQEKRVLESARYKQLQSCAGNMAFELGCLERQIIAAVAPEKSLSYVIGRIQEIYDEIRKTKCDMIQGAPALRIGKQKCTNANCDNEDPNEFIPSRGGAVACRRCGDCQSDYVIHEGEMYRNFTGEEDRSHHGPVLNPLYSASYNLGTQFTGLRGQKRNTGRETDFSVSNIGRDAAAVGGTLATRVEYKDDQKSKAFRIMREQGANLALHGLVRKKSSELFAAYRDARDRLYDFDAVVAACLIAAHLEVLVEEGSDGSRATFSFACPACGVAGFTAKRDADKHCVVSMGPSYSSSGGSGGGASSCSGAELPGLSGMGSEGEGEGGVLGTRKASSNVAVDPEIHKLNLAETRRLLLWVSQGAPYQVTAVDGICKGLQAELKSLAAKGNDSDDEEEQGVEGEKLGWNTSGKMERESEYKAGQLLIMASLKVLTGWCGKDQEAGRLFHDYLQGVKKRKSERDALREEKEQDRKRRRQHEEKPIFQELAFPCKINGGNSSSSSS 537
            N + R P   A              TAGLEQSAWT QEKRV++S RY+QL    G+ +FE  CLERQI+AAVAP++ L  V+GRI EIYDEIR+ K DMI G PALR  KQKCTN NCDN+DPN+FIPSRGGAVAC RCGDCQSDYVIHEGEMYRNF GEEDRSHHGP LNPLYSASYNLGTQFTGLRGQKRNTGRETDFSVSNIGRD AAVGGT+ATRVEYKDDQKSKAFRIMREQGANLALHGLVRKK++ELFAAYRDARDRL+DF+AVVAACLIAAHLEVLVEEGSDGS  TF+FACP CG+ GFT KRDA+KHCVVS GP+ SS    G          L   +G G    G G     RKAS   A DP++ K+ LAETRRLLLWVS+GAPYQ  AVDG+C GLQAE++S + K + SD E     +    G   + ++ERES +KAGQLL+MASLKVLT WCG D EAGRLF DYLQGVKKRK ER AL EE+EQDRKRRRQ+EE+PIFQEL+   K  G +++S+ +
Sbjct:    7 NGSGRAPVTEAGGGPDAQDGLRRPVTAGLEQSAWTQQEKRVIKSTRYRQLCELGGSASFEPACLERQIVAAVAPDRELPAVVGRIHEIYDEIRRNKKDMIDGVPALRAVKQKCTNTNCDNDDPNDFIPSRGGAVACMRCGDCQSDYVIHEGEMYRNFAGEEDRSHHGPALNPLYSASYNLGTQFTGLRGQKRNTGRETDFSVSNIGRDGAAVGGTMATRVEYKDDQKSKAFRIMREQGANLALHGLVRKKAAELFAAYRDARDRLFDFEAVVAACLIAAHLEVLVEEGSDGSGVTFAFACPGCGLRGFTVKRDAEKHCVVSTGPAGSSDSMEG---------SLEHSAGAGGRSHGGGRPQSWRKASCEAAADPDVAKMGLAETRRLLLWVSEGAPYQQAAVDGVCAGLQAEMRSQSGKESGSDGEGSGDGQAPTEGEGDTREVERESAFKAGQLLVMASLKVLTRWCGDDSEAGRLFFDYLQGVKKRKMERGALLEEEEQDRKRRRQYEERPIFQELSVSLKSEGASNNSTDA 531
The following BLAST results are available for this feature:
BLAST of NO12G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25824.11.100e-19768.54c2h2 zinc finger protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02180NO12G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02180.1NO12G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02180.1.cds1NO12G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02180.1 ID=NO12G02180.1|Name=NO12G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
ATGGACAACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGG
GCAACCTACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGT
CGGCCTGGACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAG
CAACTGCAAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGA
GCGTCAAATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGA
TTGGCCGCATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGAC
ATGATTCAGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAA
CGCCAATTGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTG
GGGCAGTGGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATT
CATGAGGGCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCA
TCACGGCCCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGA
CGCAGTTTACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACA
GACTTCAGCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGAC
ATTGGCGACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCC
GGATAATGAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGA
AAGAAGTCCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTT
GTATGATTTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGG
AGGTGCTGGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTT
GCCTGCCCGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGA
TAAGCATTGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCA
GCGGTGGTGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCA
GGAATGGGATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAA
GGCGAGCAGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCG
CTGAGACGCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAA
GTGACGGCTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTC
TCTGGCCGCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCG
AGGGGGAAAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGT
GAGTACAAGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGAC
TGGGTGGTGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATC
TACAAGGTGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAA
AAAGAACAAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTT
TCAGGAGCTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCA
GCAGCAGCATTGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAG
CATGCCTCTCCGTGA
back to top

protein sequence of NO12G02180.1

>NO12G02180.1-protein ID=NO12G02180.1-protein|Name=NO12G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MDNPATRLPAAVATDNGQPTPPSSTSTTAGLEQSAWTAQEKRVLESARYK
QLQSCAGNMAFELGCLERQIIAAVAPEKSLSYVIGRIQEIYDEIRKTKCD
MIQGAPALRIGKQKCTNANCDNEDPNEFIPSRGGAVACRRCGDCQSDYVI
HEGEMYRNFTGEEDRSHHGPVLNPLYSASYNLGTQFTGLRGQKRNTGRET
DFSVSNIGRDAAAVGGTLATRVEYKDDQKSKAFRIMREQGANLALHGLVR
KKSSELFAAYRDARDRLYDFDAVVAACLIAAHLEVLVEEGSDGSRATFSF
ACPACGVAGFTAKRDADKHCVVSMGPSYSSSGGSGGGASSCSGAELPGLS
GMGSEGEGEGGVLGTRKASSNVAVDPEIHKLNLAETRRLLLWVSQGAPYQ
VTAVDGICKGLQAELKSLAAKGNDSDDEEEQGVEGEKLGWNTSGKMERES
EYKAGQLLIMASLKVLTGWCGKDQEAGRLFHDYLQGVKKRKSERDALREE
KEQDRKRRRQHEEKPIFQELAFPCKINGGNSSSSSSIGRSSNSNFGGEQQ
HASP*
back to top

mRNA from alignment at chr12:626969..628633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02180.1 ID=NO12G02180.1|Name=NO12G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at chr12:626969..628633- (Nannochloropsis oceanica)
ATGGACAACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGG
GCAACCTACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGT
CGGCCTGGACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAG
CAACTGCAAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGA
GCGTCAAATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGA
TTGGCCGCATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGAC
ATGATTCAGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAA
CGCCAATTGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTG
GGGCAGTGGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATT
CATGAGGGCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCA
TCACGGCCCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGA
CGCAGTTTACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACA
GACTTCAGCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGAC
ATTGGCGACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCC
GGATAATGAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGA
AAGAAGTCCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTT
GTATGATTTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGG
AGGTGCTGGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTT
GCCTGCCCGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGA
TAAGCATTGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCA
GCGGTGGTGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCA
GGAATGGGATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAA
GGCGAGCAGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCG
CTGAGACGCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAA
GTGACGGCTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTC
TCTGGCCGCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCG
AGGGGGAAAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGT
GAGTACAAGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGAC
TGGGTGGTGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATC
TACAAGGTGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAA
AAAGAACAAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTT
TCAGGAGCTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCA
GCAGCAGCATTGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAG
CATGCCTCTCCGTGA
back to top

Coding sequence (CDS) from alignment at chr12:626969..628633-

>NO12G02180.1 ID=NO12G02180.1|Name=NO12G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr12:626969..628633- (Nannochloropsis oceanica)
ATGGACAACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGG
GCAACCTACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGT
CGGCCTGGACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAG
CAACTGCAAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGA
GCGTCAAATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGA
TTGGCCGCATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGAC
ATGATTCAGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAA
CGCCAATTGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTG
GGGCAGTGGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATT
CATGAGGGCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCA
TCACGGCCCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGA
CGCAGTTTACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACA
GACTTCAGCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGAC
ATTGGCGACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCC
GGATAATGAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGA
AAGAAGTCCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTT
GTATGATTTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGG
AGGTGCTGGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTT
GCCTGCCCGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGA
TAAGCATTGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCA
GCGGTGGTGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCA
GGAATGGGATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAA
GGCGAGCAGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCG
CTGAGACGCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAA
GTGACGGCTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTC
TCTGGCCGCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCG
AGGGGGAAAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGT
GAGTACAAGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGAC
TGGGTGGTGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATC
TACAAGGTGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAA
AAAGAACAAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTT
TCAGGAGCTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCA
GCAGCAGCATTGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAG
CATGCCTCTCCGTGA
back to top
Synonyms
Publications