NO12G02140.1, NO12G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02140.1
Unique NameNO12G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2062
Alignment locationchr12:611490..613551 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:611490..613551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02140.1 vs.
Match: EWM25852.1 (dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Nannochloropsis gaditana])

HSP 1 Score: 619.8 bits (1597), Expect = 7.100e-174
Identity = 311/457 (68.05%), Postives = 374/457 (81.84%), Query Frame = 0 
Query:   18 TALLLFVLLQACAFFVQAQQNLDIVRKVDLTMAVVRSQATIRVSELQGSYVVSFPAALAPKLSFLQVVLGGNQVLLPTRLPDAGDGLAHYDVQVSGGISEATFQISATFVDALKPLPAEIAQGEDQLVQYFDSHTVPSLYPTTTQTSTFKIGISHIESFTKINPYAMAGQELSFGPFPDVAGGAE-SLSPLVIHYKNNAPFAKALQAIREIEVSHWGNVAFEDFLEVHHSGAVLKGGFSRLDYQVGGSPSAFQGLVAVLPPGARNIYYRDQIGNISSSLIRYRPHGVELDLQSRFPLFGGWKNQFYQGYSVPVEELLAC-EVEGDASQYALTVPFSVPFSELWVEELTVKVVLPEWATNIQVQLPFDVDEEYQTSRLTFLDTSMSGGRPVVVLKKRNVVAEHIQPMIITYSFPRRAMLLEPLYLVLAFFSFFLLCMLFARVDLRVTPDSEKGKKSKT 473
            +AL L +LL +C FF QAQ+N+++VRK+DL+ AVVR   TI  ++L G YVVSF   LAPKLSFLQ+ +G NQ L   RLPDAGDGLAH+  +V  G++EA   +  T   AL P+PAEI   E+QLVQY DSHT PSLYPT  QT+TF +G+SHIESFTK +PY+  G++L FGP  D+ GGA  SLSP+ IHY+NNAPF KALQAIREIEVSHWGNVAFEDF+EV H+GA LKGGFSRLD+Q  G+PSA +GLVAVLP GAR+IYYRDQIGNIS+S+I++ P GVEL+LQSRFPL GGWKNQFYQGYSVPV+ELL      G   ++ LTVPFSVPF E+WVE+LTVKVVLPEWA +++V++PF VDEE+QT RLTFLD+S+SGGRPV++LKKRNVVAEH+QPM+++YSFP RAMLLEPLYLVLAFFSFFL+CM+FARVDLR+  D  K KKSKT
Sbjct:   16 SALGLLLLLCSCTFFAQAQKNIEVVRKIDLSSAVVRIDMTILANDLNGKYVVSFAKHLAPKLSFLQIAMG-NQPLPWIRLPDAGDGLAHFQAEVPQGMTEAKLTVFGTLAGALVPVPAEIELTENQLVQYLDSHTFPSLYPTARQTTTFALGVSHIESFTKRDPYSRTGKDLVFGPITDIEGGAAASLSPITIHYQNNAPFVKALQAIREIEVSHWGNVAFEDFVEVKHAGAALKGGFSRLDFQARGAPSAVRGLVAVLPLGARSIYYRDQIGNISTSVIQHGPDGVELNLQSRFPLVGGWKNQFYQGYSVPVQELLTVGPSSGGVRRFTLTVPFSVPFPEVWVEDLTVKVVLPEWAADVRVEIPFSVDEEHQTHRLTFLDSSLSGGRPVLILKKRNVVAEHMQPMVLSYSFPTRAMLLEPLYLVLAFFSFFLVCMIFARVDLRINADGGK-KKSKT 470
The following BLAST results are available for this feature:
BLAST of NO12G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25852.17.100e-17468.05dolichyl-diphosphooligosaccharide-protein glycosyl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02140NO12G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02140.1NO12G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02140.1.cds1NO12G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02140.1 ID=NO12G02140.1|Name=NO12G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
AGACAAGGCACATTTTCCCACAGAGAGGATTAACAATGCAAGGGATGTCG
CAGCGGCCACCATTTGCTGCTGCTGGGGGACCCACGACAGCACTTCTCCT
GTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGCAGGCGCAACAAAACC
TGGACATTGTGCGTAAGGTGGATCTGACCATGGCAGTGGTACGCTCTCAA
GCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTACGTCGTCTCCTTTCC
CGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAGTGGTGTTGGGCGGCA
ACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCAGGGGATGGTCTCGCG
CACTACGATGTCCAAGTGTCCGGAGGCATATCTGAAGCTACGTTCCAGAT
ATCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGCCGGCTGAAATCGCCC
AAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGCCACACTGTGCCTTCC
CTGTACCCGACGACGACGCAGACCTCGACGTTCAAGATTGGTATATCGCA
CATCGAAAGCTTCACCAAGATAAATCCGTACGCAATGGCGGGTCAAGAAC
TTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGCGCCGAATCGCTCTCT
CCACTCGTGATTCACTACAAAAACAACGCCCCCTTCGCCAAGGCCCTGCA
GGCCATTCGAGAAATTGAGGTCTCACATTGGGGCAACGTGGCATTTGAGG
ACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTCAAAGGCGGCTTCTCA
CGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGCGTTTCAGGGGCTGGT
GGCGGTCTTACCTCCTGGCGCACGCAACATTTACTACCGCGACCAAATTG
GAAATATCTCCTCTTCTTTGATCCGATATCGGCCGCACGGGGTGGAGCTG
GACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATGGAAGAATCAGTTTTA
TCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGGCCTGTGAGGTGGAGG
GGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTTTCAGTGCCGTTCTCG
GAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGTGCTGCCAGAGTGGGC
GACGAACATCCAAGTTCAGTTGCCGTTTGACGTGGACGAGGAGTACCAAA
CCAGCCGGCTAACCTTTCTTGATACATCTATGAGTGGTGGCCGGCCTGTG
GTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCACATCCAGCCCATGAT
CATTACATATTCGTTCCCAAGGCGTGCCATGCTCTTGGAACCTTTGTATC
TGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGCATGCTATTTGCCCGG
GTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGGAAAGAAAAGCAAAAC
TCAGTAATTTTGTTAGGAAACGGAGATGAAGAAGGGGCAAAAAAAATATG
CTTGGGGCTTTTATGGTATGGAATGGAATAGAACAAAAATGGATGAGGCG
CTGACTGCAGACAAAGCCTAGTGGGGAAAAGTTGGGAAGTTTGCGGCGGT
GTATTCATACAAGGGCATGTCCTTTCTGCCAGCTGACGAACAGGCAAAAC
AACGTAGAAAATGCCATGGACATGTATTTCAATCAATCTACCTGCTCATT
TTTGTCGCGCTTGGCGTGGCGAAGGGAATGGTATTGCATCTTTCAATTCA
ACTTTTATAACAATTCAGCTTTAAATATCTAACTCTTTGAGCCATCACGT
ATGGATTGCTGCTCTCATGTCCAAGCTACCCCCACAAAGAAATTATATCG
GGGAGGGTGAGAAGTCGTGAGAAATGCGGCGGGGAACGTGCATTCGCGTT
CCTTGCTGACCAAAAGGATACCGTCTATACAGCCTGAAAAGGCCCATGTA
TGTGACTCCCCGGCTGGTGCTGGCGCAAAGCGCATGGGCACGTTCAACCG
CGTGCGAGTGGGAAAATCTGGCCCATTTTCTTGCAAAAACGAAGTTATAC
GTGTCATCACGT
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protein sequence of NO12G02140.1

>NO12G02140.1-protein ID=NO12G02140.1-protein|Name=NO12G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MQGMSQRPPFAAAGGPTTALLLFVLLQACAFFVQAQQNLDIVRKVDLTMA
VVRSQATIRVSELQGSYVVSFPAALAPKLSFLQVVLGGNQVLLPTRLPDA
GDGLAHYDVQVSGGISEATFQISATFVDALKPLPAEIAQGEDQLVQYFDS
HTVPSLYPTTTQTSTFKIGISHIESFTKINPYAMAGQELSFGPFPDVAGG
AESLSPLVIHYKNNAPFAKALQAIREIEVSHWGNVAFEDFLEVHHSGAVL
KGGFSRLDYQVGGSPSAFQGLVAVLPPGARNIYYRDQIGNISSSLIRYRP
HGVELDLQSRFPLFGGWKNQFYQGYSVPVEELLACEVEGDASQYALTVPF
SVPFSELWVEELTVKVVLPEWATNIQVQLPFDVDEEYQTSRLTFLDTSMS
GGRPVVVLKKRNVVAEHIQPMIITYSFPRRAMLLEPLYLVLAFFSFFLLC
MLFARVDLRVTPDSEKGKKSKTQ*
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mRNA from alignment at chr12:611490..613551+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02140.1 ID=NO12G02140.1|Name=NO12G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at chr12:611490..613551+ (Nannochloropsis oceanica)
AGACAAGGCACATTTTCCCACAGAGAGGATTAACAATGCAAGGGATGTCG
CAGCGGCCACCATTTGCTGCTGCTGGGGGACCCACGACAGCACTTCTCCT
GTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGCAGGCGCAACAAAACC
TGGACATTGTGCGTAAGGTGGATCTGACCATGGCAGTGGTACGCTCTCAA
GCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTACGTCGTCTCCTTTCC
CGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAGTGGTGTTGGGCGGCA
ACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCAGGGGATGGTCTCGCG
CACTACGATGTCCAAGTGTCCGGAGGCATATCTGAAGCTACGTTCCAGAT
ATCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGCCGGCTGAAATCGCCC
AAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGCCACACTGTGCCTTCC
CTGTACCCGACGACGACGCAGACCTCGACGTTCAAGATTGGTATATCGCA
CATCGAAAGCTTCACCAAGATAAATCCGTACGCAATGGCGGGTCAAGAAC
TTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGCGCCGAATCGCTCTCT
CCACTCGTGATTCACTACAAAAACAACGCCCCCTTCGCCAAGGCCCTGCA
GGCCATTCGAGAAATTGAGGTCTCACATTGGGGCAACGTGGCATTTGAGG
ACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTCAAAGGCGGCTTCTCA
CGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGCGTTTCAGGGGCTGGT
GGCGGTCTTACCTCCTGGCGCACGCAACATTTACTACCGCGACCAAATTG
GAAATATCTCCTCTTCTTTGATCCGATATCGGCCGCACGGGGTGGAGCTG
GACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATGGAAGAATCAGTTTTA
TCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGGCCTGTGAGGTGGAGG
GGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTTTCAGTGCCGTTCTCG
GAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGTGCTGCCAGAGTGGGC
GACGAACATCCAAGTTCAGTTGCCGTTTGACGTGGACGAGGAGTACCAAA
CCAGCCGGCTAACCTTTCTTGATACATCTATGAGTGGTGGCCGGCCTGTG
GTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCACATCCAGCCCATGAT
CATTACATATTCGTTCCCAAGGCGTGCCATGCTCTTGGAACCTTTGTATC
TGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGCATGCTATTTGCCCGG
GTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGGAAAGAAAAGCAAAAC
TCAGTAATTTTGTTAGGAAACGGAGATGAAGAAGGGGCAAAAAAAATATG
CTTGGGGCTTTTATGGTATGGAATGGAATAGAACAAAAATGGATGAGGCG
CTGACTGCAGACAAAGCCTAGTGGGGAAAAGTTGGGAAGTTTGCGGCGGT
GTATTCATACAAGGGCATGTCCTTTCTGCCAGCTGACGAACAGGCAAAAC
AACGTAGAAAATGCCATGGACATGTATTTCAATCAATCTACCTGCTCATT
TTTGTCGCGCTTGGCGTGGCGAAGGGAATGGTATTGCATCTTTCAATTCA
ACTTTTATAACAATTCAGCTTTAAATATCTAACTCTTTGAGCCATCACGT
ATGGATTGCTGCTCTCATGTCCAAGCTACCCCCACAAAGAAATTATATCG
GGGAGGGTGAGAAGTCGTGAGAAATGCGGCGGGGAACGTGCATTCGCGTT
CCTTGCTGACCAAAAGGATACCGTCTATACAGCCTGAAAAGGCCCATGTA
TGTGACTCCCCGGCTGGTGCTGGCGCAAAGCGCATGGGCACGTTCAACCG
CGTGCGAGTGGGAAAATCTGGCCCATTTTCTTGCAAAAACGAAGTTATAC
GTGTCATCACGT
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Coding sequence (CDS) from alignment at chr12:611490..613551+

>NO12G02140.1 ID=NO12G02140.1|Name=NO12G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr12:611490..613551+ (Nannochloropsis oceanica)
ATGCAAGGGATGTCGCAGCGGCCACCATTTGCTGCTGCTGGGGGACCCAC
GACAGCACTTCTCCTGTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGC
AGGCGCAACAAAACCTGGACATTGTGCGTAAGGTGGATCTGACCATGGCA
GTGGTACGCTCTCAAGCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTA
CGTCGTCTCCTTTCCCGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAG
TGGTGTTGGGCGGCAACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCA
GGGGATGGTCTCGCGCACTACGATGTCCAAGTGTCCGGAGGCATATCTGA
AGCTACGTTCCAGATATCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGC
CGGCTGAAATCGCCCAAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGC
CACACTGTGCCTTCCCTGTACCCGACGACGACGCAGACCTCGACGTTCAA
GATTGGTATATCGCACATCGAAAGCTTCACCAAGATAAATCCGTACGCAA
TGGCGGGTCAAGAACTTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGC
GCCGAATCGCTCTCTCCACTCGTGATTCACTACAAAAACAACGCCCCCTT
CGCCAAGGCCCTGCAGGCCATTCGAGAAATTGAGGTCTCACATTGGGGCA
ACGTGGCATTTGAGGACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTC
AAAGGCGGCTTCTCACGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGC
GTTTCAGGGGCTGGTGGCGGTCTTACCTCCTGGCGCACGCAACATTTACT
ACCGCGACCAAATTGGAAATATCTCCTCTTCTTTGATCCGATATCGGCCG
CACGGGGTGGAGCTGGACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATG
GAAGAATCAGTTTTATCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGG
CCTGTGAGGTGGAGGGGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTT
TCAGTGCCGTTCTCGGAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGT
GCTGCCAGAGTGGGCGACGAACATCCAAGTTCAGTTGCCGTTTGACGTGG
ACGAGGAGTACCAAACCAGCCGGCTAACCTTTCTTGATACATCTATGAGT
GGTGGCCGGCCTGTGGTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCA
CATCCAGCCCATGATCATTACATATTCGTTCCCAAGGCGTGCCATGCTCT
TGGAACCTTTGTATCTGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGC
ATGCTATTTGCCCGGGTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGG
AAAGAAAAGCAAAACTCAGTAA
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Synonyms
Publications