NO12G02130.1, NO12G02130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02130.1
Unique Name	NO12G02130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2401
Alignment location	chr12:608976..611376 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:608976..611376 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G02130.1 vs.
Match: EWM25837.1 (maleylacetate reductase [Nannochloropsis gaditana])

HSP 1 Score: 665.6 bits (1716), Expect = 1.400e-187
Identity = 357/621 (57.49%), Postives = 444/621 (71.50%), Query Frame = 0

Query:    1 MQEFVVEAPPARIFFGPGCIKCVGATEIRKLGLHRLLVLGSHRALTGTPALVELQAAIKDLVVGVIQDVEWYNSPEALVDKANEVSSVDADGLLVIGGGSPLGLAKALAQLMSQFS------PSRLAIVSIPTTYSGSEVTAYHGIHLSADGMPQ----------------KFAIRNRVVRPLLVLYDAQLLLGLPRALAISSSFNALAHAFEALWVSRTPSPQSQRAAKMSIETIFKYLPALDTTDQ--ESEEGLEVVNELLHAAYLGAHSLDTEDLGLQHQLAHVLIGTYNLPHAEAHMLLLPHVIHFYEETWAGAGKNTTPLTDIQLPLTSSPMLGMACHVFDFQRTLLRSQPPLNLKDLGLQESDLEGVIDTLIEYDGLSKDPEFPWAKPALLILLQHAWAGDRPLLERHAQSPQVSSVPKVPRVSYLSNDDFRGQDPEAAAKIVARRQGNLLNLDRVLMHAPAVAQGWNAMFGSLRSGLQLIDGRLRELVILRVAVLNRAYYEYFQHYPVLLAEGGTVAEAEALGDWQGEAARGIFGDRDKAVLAYVDEMTRHVQVQQATAETLRAVLPVGNSESYMVELTALCAGYNMVSRFLEALQLTPETTNLAELPHMPVDV 598
            M+EFVV+ PPARI FGPGC+  VGA EIR LG  RL+++GS R+L   PA+V LQ+ + DLVVG I  V+     + + +   EV  + AD L+V+GGG+ LGLAKALA L+   S      PS L I+SIPTTYSGSEVT+YHG+ +  +   Q                K A+RN+ VRP LVLYDA  L  LP  L ISS FNALAHAFEALWV+  PSPQ+  AA  S+  I +Y+  LD + +  ++ E L VVNELL+ AYL A+SLDTEDLGLQH+LAHVL GTY++PHA+AHMLLLPHV+ FYE+ WA  G+ TTPL+ ++L    S      C +FD QR+L+ S+PPL+L+D+GL + DLEGV+DTL+E+ G+    + P +KP LL LLQHA +G+ P  E    S       + PR+SYLS+ DFR +DPEAA+KI+ARR G LL+LDRVLMHAP VAQGWNAMFGSLRSGL+ IDGRLRELVILRVAV+N+AYYEYFQHYPV L EGG+V EAEALG+W+ EA++ +FG +D+AVLAYVDEMT  +QVQ  T + L A       ES++VELTALCAGYNMVSRFLEAL LT E+ N A LP MPVD+
Sbjct:    1 MREFVVKGPPARIIFGPGCVSRVGAAEIRTLGCKRLVMVGSVRSLKNIPAVVALQSELGDLVVGTIPRVKENVYGDLVEEAGKEVGRLRADALVVVGGGTALGLAKALANLLPLSSTGPSQMPSPLTIISIPTTYSGSEVTSYHGVSVVLNPAAQALIDKDANKPHGIKARKVAVRNQAVRPALVLYDAHFLQSLPYPLTISSLFNALAHAFEALWVNPMPSPQACWAASESVNIILRYIGNLDPSGRVADASESLVVVNELLYGAYLAAYSLDTEDLGLQHRLAHVLGGTYSVPHAQAHMLLLPHVLRFYEDAWADGGEKTTPLSHLKLGQAPSTQSLARC-IFDIQRSLVHSKPPLSLQDVGLGQPDLEGVVDTLLEHGGIPVRQDVPISKPLLLGLLQHAISGESPPWEGRPAS-------RTPRISYLSDQDFRAKDPEAASKIMARRHGQLLHLDRVLMHAPTVAQGWNAMFGSLRSGLRSIDGRLRELVILRVAVVNQAYYEYFQHYPVFLKEGGSVPEAEALGNWRSEASKHLFGAKDRAVLAYVDEMTGRIQVQDKTVKILFATASTEAPESFVVELTALCAGYNMVSRFLEALHLTAESENSAALPRMPVDI 613

The following BLAST results are available for this feature:

BLAST of NO12G02130.1 vs.

BLAST of NO12G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25837.1	1.400e-187	57.49	maleylacetate reductase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02130	NO12G02130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02130.1	NO12G02130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02130.1.cds1	NO12G02130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:608976..611376-
coding sequence from alignment at chr12:608976..611376-

mRNA sequence

>NO12G02130.1 ID=NO12G02130.1|Name=NO12G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
CTTCTTCCGATCGATGGCCGTCTCCCTACTCGCCAACCTCCTCCCTCGCC
TCGGCACGAACAAAGCTATAAGGATGTTATTGAAATGGACGGCGCTCGTG
CATTTATAGGAAAAAGACACGTCTACCACAAGCACGGCATAGTGCTATGG
GGGCCGGGGTACGTGGGTAAGCAAGGACCAGGAAGGCAGGGGACCACTTC
CCTCGCTGGCCTCGCTCACCTCTCTATCCGTCACTCTTGGTGCTGTGTAC
GGTGGACCGAGCCCAATCCCGACCTCTTATCTCAAAGATATCTGGATTGT
CACAGGCTCGCACTCTCTCTCATTCTTTAAGCGAGATTTGAGTCGCCTGC
ATATCAAACCTCCCACACCTCCCACACTACAAGTACACACACGTGACCCA
CAAGGCATCTCACAGTAGCACAGGCACATGCAAGAATTCGTGGTCGAGGC
ACCTCCGGCACGTATTTTCTTTGGACCGGGATGCATTAAATGTGTTGGAG
CGACAGAGATTCGGAAGTTGGGCCTTCACCGCTTGCTTGTCCTTGGATCT
CATCGTGCGTTGACTGGTACCCCTGCTCTGGTTGAGCTGCAGGCCGCGAT
CAAGGATCTTGTGGTAGGGGTGATTCAAGATGTTGAGTGGTATAATTCAC
CGGAAGCGCTTGTGGACAAAGCCAATGAGGTGTCGAGTGTGGATGCTGAT
GGGTTGCTCGTGATTGGAGGTGGGTCGCCTCTTGGGTTGGCCAAGGCACT
GGCCCAGCTCATGTCCCAGTTTTCACCATCGCGATTGGCTATCGTCAGCA
TTCCAACAACTTATTCGGGTAGTGAGGTGACTGCATATCATGGTATACAT
CTAAGTGCTGACGGCATGCCCCAGAAGTTCGCCATCCGCAACCGTGTGGT
CCGCCCTCTCCTCGTCTTGTATGACGCCCAGCTCCTCCTAGGGCTGCCCC
GTGCGTTGGCCATCTCTTCCTCGTTCAACGCCCTTGCCCATGCCTTTGAG
GCACTGTGGGTGAGTCGCACGCCCTCTCCGCAATCACAGCGGGCGGCCAA
GATGAGTATTGAAACTATTTTCAAGTATTTACCTGCCTTGGACACGACTG
ATCAAGAGAGCGAGGAAGGCCTCGAGGTGGTTAACGAGCTACTACATGCT
GCCTATCTGGGTGCCCATAGCTTGGACACGGAGGACCTTGGGCTGCAACA
TCAACTCGCACACGTCTTGATAGGGACGTACAACTTGCCTCACGCAGAGG
CTCATATGCTGCTTTTACCGCATGTCATTCACTTCTACGAAGAAACTTGG
GCCGGTGCTGGCAAGAATACTACCCCCCTGACCGACATTCAGTTACCTTT
GACGTCGTCTCCTATGCTAGGGATGGCCTGCCATGTCTTCGATTTTCAAC
GGACGCTGTTACGTTCTCAGCCGCCTTTGAACCTCAAGGACCTGGGTTTG
CAAGAGTCAGATTTGGAAGGCGTGATAGACACGCTGATAGAGTACGATGG
CCTGTCCAAGGATCCAGAATTTCCCTGGGCCAAACCAGCGCTTCTTATCT
TGCTGCAGCACGCTTGGGCGGGTGACCGACCATTGTTGGAGCGTCATGCG
CAAAGCCCTCAAGTCTCATCTGTGCCCAAGGTGCCGCGCGTATCTTATCT
GTCCAACGACGATTTCCGTGGCCAGGACCCCGAGGCAGCTGCCAAGATTG
TGGCACGGCGCCAAGGGAATCTTTTGAATTTGGATCGCGTCTTGATGCAT
GCTCCCGCAGTGGCTCAAGGCTGGAATGCCATGTTTGGCAGTTTGCGGTC
AGGTCTCCAACTTATAGATGGACGCCTAAGGGAGCTGGTCATTTTGCGTG
TTGCTGTCTTGAATCGAGCTTATTATGAGTACTTTCAGCATTATCCTGTT
CTTTTAGCCGAAGGTGGGACAGTCGCGGAGGCCGAAGCTTTGGGTGATTG
GCAAGGAGAAGCGGCAAGGGGAATTTTTGGGGATCGGGACAAGGCAGTGT
TAGCGTATGTAGACGAGATGACGCGACATGTACAGGTGCAGCAGGCGACG
GCGGAAACCTTGCGTGCCGTGTTGCCAGTGGGAAATTCAGAATCTTATAT
GGTGGAGTTGACGGCGTTGTGTGCAGGATACAACATGGTTTCTCGCTTTT
TGGAAGCCTTGCAGCTCACACCTGAGACAACAAACCTCGCGGAACTGCCG
CACATGCCAGTGGATGTGGGCGACAAGCGGTAGCAGTGTTGAAAGCAGGT
TTGTCGAGGGAAATGGCGACCAAAAATGGAGCGTGGATAATGAGTGAAGG
AGATTATCGGATACAGATGGCTCGAAATTAAATTGATTCAGATTCCAGAA
AGACAAAACCTGCTACATTTCCGCAATGAACATGACATAAGATGAGAGAA
A

protein sequence of NO12G02130.1

>NO12G02130.1-protein ID=NO12G02130.1-protein|Name=NO12G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MQEFVVEAPPARIFFGPGCIKCVGATEIRKLGLHRLLVLGSHRALTGTPA
LVELQAAIKDLVVGVIQDVEWYNSPEALVDKANEVSSVDADGLLVIGGGS
PLGLAKALAQLMSQFSPSRLAIVSIPTTYSGSEVTAYHGIHLSADGMPQK
FAIRNRVVRPLLVLYDAQLLLGLPRALAISSSFNALAHAFEALWVSRTPS
PQSQRAAKMSIETIFKYLPALDTTDQESEEGLEVVNELLHAAYLGAHSLD
TEDLGLQHQLAHVLIGTYNLPHAEAHMLLLPHVIHFYEETWAGAGKNTTP
LTDIQLPLTSSPMLGMACHVFDFQRTLLRSQPPLNLKDLGLQESDLEGVI
DTLIEYDGLSKDPEFPWAKPALLILLQHAWAGDRPLLERHAQSPQVSSVP
KVPRVSYLSNDDFRGQDPEAAAKIVARRQGNLLNLDRVLMHAPAVAQGWN
AMFGSLRSGLQLIDGRLRELVILRVAVLNRAYYEYFQHYPVLLAEGGTVA
EAEALGDWQGEAARGIFGDRDKAVLAYVDEMTRHVQVQQATAETLRAVLP
VGNSESYMVELTALCAGYNMVSRFLEALQLTPETTNLAELPHMPVDVGDK
R*

mRNA from alignment at chr12:608976..611376-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02130.1 ID=NO12G02130.1|Name=NO12G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at chr12:608976..611376- (Nannochloropsis oceanica)
CTTCTTCCGATCGATGGCCGTCTCCCTACTCGCCAACCTCCTCCCTCGCC
TCGGCACGAACAAAGCTATAAGGATGTTATTGAAATGGACGGCGCTCGTG
CATTTATAGGAAAAAGACACGTCTACCACAAGCACGGCATAGTGCTATGG
GGGCCGGGGTACGTGGGTAAGCAAGGACCAGGAAGGCAGGGGACCACTTC
CCTCGCTGGCCTCGCTCACCTCTCTATCCGTCACTCTTGGTGCTGTGTAC
GGTGGACCGAGCCCAATCCCGACCTCTTATCTCAAAGATATCTGGATTGT
CACAGGCTCGCACTCTCTCTCATTCTTTAAGCGAGATTTGAGTCGCCTGC
ATATCAAACCTCCCACACCTCCCACACTACAAGTACACACACGTGACCCA
CAAGGCATCTCACAGTAGCACAGGCACATGCAAGAATTCGTGGTCGAGGC
ACCTCCGGCACGTATTTTCTTTGGACCGGGATGCATTAAATGTGTTGGAG
CGACAGAGATTCGGAAGTTGGGCCTTCACCGCTTGCTTGTCCTTGGATCT
CATCGTGCGTTGACTGGTACCCCTGCTCTGGTTGAGCTGCAGGCCGCGAT
CAAGGATCTTGTGGTAGGGGTGATTCAAGATGTTGAGTGGTATAATTCAC
CGGAAGCGCTTGTGGACAAAGCCAATGAGGTGTCGAGTGTGGATGCTGAT
GGGTTGCTCGTGATTGGAGGTGGGTCGCCTCTTGGGTTGGCCAAGGCACT
GGCCCAGCTCATGTCCCAGTTTTCACCATCGCGATTGGCTATCGTCAGCA
TTCCAACAACTTATTCGGGTAGTGAGGTGACTGCATATCATGGTATACAT
CTAAGTGCTGACGGCATGCCCCAGAAGTTCGCCATCCGCAACCGTGTGGT
CCGCCCTCTCCTCGTCTTGTATGACGCCCAGCTCCTCCTAGGGCTGCCCC
GTGCGTTGGCCATCTCTTCCTCGTTCAACGCCCTTGCCCATGCCTTTGAG
GCACTGTGGGTGAGTCGCACGCCCTCTCCGCAATCACAGCGGGCGGCCAA
GATGAGTATTGAAACTATTTTCAAGTATTTACCTGCCTTGGACACGACTG
ATCAAGAGAGCGAGGAAGGCCTCGAGGTGGTTAACGAGCTACTACATGCT
GCCTATCTGGGTGCCCATAGCTTGGACACGGAGGACCTTGGGCTGCAACA
TCAACTCGCACACGTCTTGATAGGGACGTACAACTTGCCTCACGCAGAGG
CTCATATGCTGCTTTTACCGCATGTCATTCACTTCTACGAAGAAACTTGG
GCCGGTGCTGGCAAGAATACTACCCCCCTGACCGACATTCAGTTACCTTT
GACGTCGTCTCCTATGCTAGGGATGGCCTGCCATGTCTTCGATTTTCAAC
GGACGCTGTTACGTTCTCAGCCGCCTTTGAACCTCAAGGACCTGGGTTTG
CAAGAGTCAGATTTGGAAGGCGTGATAGACACGCTGATAGAGTACGATGG
CCTGTCCAAGGATCCAGAATTTCCCTGGGCCAAACCAGCGCTTCTTATCT
TGCTGCAGCACGCTTGGGCGGGTGACCGACCATTGTTGGAGCGTCATGCG
CAAAGCCCTCAAGTCTCATCTGTGCCCAAGGTGCCGCGCGTATCTTATCT
GTCCAACGACGATTTCCGTGGCCAGGACCCCGAGGCAGCTGCCAAGATTG
TGGCACGGCGCCAAGGGAATCTTTTGAATTTGGATCGCGTCTTGATGCAT
GCTCCCGCAGTGGCTCAAGGCTGGAATGCCATGTTTGGCAGTTTGCGGTC
AGGTCTCCAACTTATAGATGGACGCCTAAGGGAGCTGGTCATTTTGCGTG
TTGCTGTCTTGAATCGAGCTTATTATGAGTACTTTCAGCATTATCCTGTT
CTTTTAGCCGAAGGTGGGACAGTCGCGGAGGCCGAAGCTTTGGGTGATTG
GCAAGGAGAAGCGGCAAGGGGAATTTTTGGGGATCGGGACAAGGCAGTGT
TAGCGTATGTAGACGAGATGACGCGACATGTACAGGTGCAGCAGGCGACG
GCGGAAACCTTGCGTGCCGTGTTGCCAGTGGGAAATTCAGAATCTTATAT
GGTGGAGTTGACGGCGTTGTGTGCAGGATACAACATGGTTTCTCGCTTTT
TGGAAGCCTTGCAGCTCACACCTGAGACAACAAACCTCGCGGAACTGCCG
CACATGCCAGTGGATGTGGGCGACAAGCGGTAGCAGTGTTGAAAGCAGGT
TTGTCGAGGGAAATGGCGACCAAAAATGGAGCGTGGATAATGAGTGAAGG
AGATTATCGGATACAGATGGCTCGAAATTAAATTGATTCAGATTCCAGAA
AGACAAAACCTGCTACATTTCCGCAATGAACATGACATAAGATGAGAGAA
A

Coding sequence (CDS) from alignment at chr12:608976..611376-

>NO12G02130.1 ID=NO12G02130.1|Name=NO12G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr12:608976..611376- (Nannochloropsis oceanica)
ATGCAAGAATTCGTGGTCGAGGCACCTCCGGCACGTATTTTCTTTGGACC
GGGATGCATTAAATGTGTTGGAGCGACAGAGATTCGGAAGTTGGGCCTTC
ACCGCTTGCTTGTCCTTGGATCTCATCGTGCGTTGACTGGTACCCCTGCT
CTGGTTGAGCTGCAGGCCGCGATCAAGGATCTTGTGGTAGGGGTGATTCA
AGATGTTGAGTGGTATAATTCACCGGAAGCGCTTGTGGACAAAGCCAATG
AGGTGTCGAGTGTGGATGCTGATGGGTTGCTCGTGATTGGAGGTGGGTCG
CCTCTTGGGTTGGCCAAGGCACTGGCCCAGCTCATGTCCCAGTTTTCACC
ATCGCGATTGGCTATCGTCAGCATTCCAACAACTTATTCGGGTAGTGAGG
TGACTGCATATCATGGTATACATCTAAGTGCTGACGGCATGCCCCAGAAG
TTCGCCATCCGCAACCGTGTGGTCCGCCCTCTCCTCGTCTTGTATGACGC
CCAGCTCCTCCTAGGGCTGCCCCGTGCGTTGGCCATCTCTTCCTCGTTCA
ACGCCCTTGCCCATGCCTTTGAGGCACTGTGGGTGAGTCGCACGCCCTCT
CCGCAATCACAGCGGGCGGCCAAGATGAGTATTGAAACTATTTTCAAGTA
TTTACCTGCCTTGGACACGACTGATCAAGAGAGCGAGGAAGGCCTCGAGG
TGGTTAACGAGCTACTACATGCTGCCTATCTGGGTGCCCATAGCTTGGAC
ACGGAGGACCTTGGGCTGCAACATCAACTCGCACACGTCTTGATAGGGAC
GTACAACTTGCCTCACGCAGAGGCTCATATGCTGCTTTTACCGCATGTCA
TTCACTTCTACGAAGAAACTTGGGCCGGTGCTGGCAAGAATACTACCCCC
CTGACCGACATTCAGTTACCTTTGACGTCGTCTCCTATGCTAGGGATGGC
CTGCCATGTCTTCGATTTTCAACGGACGCTGTTACGTTCTCAGCCGCCTT
TGAACCTCAAGGACCTGGGTTTGCAAGAGTCAGATTTGGAAGGCGTGATA
GACACGCTGATAGAGTACGATGGCCTGTCCAAGGATCCAGAATTTCCCTG
GGCCAAACCAGCGCTTCTTATCTTGCTGCAGCACGCTTGGGCGGGTGACC
GACCATTGTTGGAGCGTCATGCGCAAAGCCCTCAAGTCTCATCTGTGCCC
AAGGTGCCGCGCGTATCTTATCTGTCCAACGACGATTTCCGTGGCCAGGA
CCCCGAGGCAGCTGCCAAGATTGTGGCACGGCGCCAAGGGAATCTTTTGA
ATTTGGATCGCGTCTTGATGCATGCTCCCGCAGTGGCTCAAGGCTGGAAT
GCCATGTTTGGCAGTTTGCGGTCAGGTCTCCAACTTATAGATGGACGCCT
AAGGGAGCTGGTCATTTTGCGTGTTGCTGTCTTGAATCGAGCTTATTATG
AGTACTTTCAGCATTATCCTGTTCTTTTAGCCGAAGGTGGGACAGTCGCG
GAGGCCGAAGCTTTGGGTGATTGGCAAGGAGAAGCGGCAAGGGGAATTTT
TGGGGATCGGGACAAGGCAGTGTTAGCGTATGTAGACGAGATGACGCGAC
ATGTACAGGTGCAGCAGGCGACGGCGGAAACCTTGCGTGCCGTGTTGCCA
GTGGGAAATTCAGAATCTTATATGGTGGAGTTGACGGCGTTGTGTGCAGG
ATACAACATGGTTTCTCGCTTTTTGGAAGCCTTGCAGCTCACACCTGAGA
CAACAAACCTCGCGGAACTGCCGCACATGCCAGTGGATGTGGGCGACAAG
CGGTAG

Synonyms

Publications