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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:593120..595690 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02100.1 vs.
Match: EWM25833.1 (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 1060.4 bits (2741), Expect = 2.500e-306 Identity = 572/746 (76.68%), Postives = 635/746 (85.12%), Query Frame = 0
Query: 18 MVKRMS-IALALLLLQASSVNAFL---CLPLPGAQQRHV-LSQLTAAIATRTGKSNKAAAAVTYTPTPNYGDTQGAELYLDGVAVAAGATSLVSGVSWKINKGERVGIVGGNGAGKSTMLSVIAGYNMPEEGTVTVHPRATLGYLVQTAVSGSTRTLKEEAMSQMTAFHDAEAAVARAEARANVDPSDSNLLALERAQALWVEAGGEDVTQRVENILSGLGFQRTDYTRPCTDFSGGWQMRIALARLLLGEPSLLLLDEPTNHLDSAAKDWLMHFLTSYTGTVLLVSHEEELLRAFQCTTVAELRFQALELYRCGYDQFLEQRKERAEALEAAAARQAKERARVQGFIDRFGAKATMASAANSRKLKLEKMSIIEGPQAAVKRPHLRFPVPPKVMPELLKLRNASFGYPPAAPLVEKVDFTLTRGTRMVLLGPNGCGKSTVLKALTGTLPPLETGSSDRILGEGLEMGVFTQDLAQDLPQDQVAVDYVLATVRQKDMSITDQQARGALGALGLMGEKAMRPISALSGGEKARVALSVFALLPHNLLVLDEPSNHLDIGTTETLSEALAEFRGTMVVISHNKAFVEKLKVTHVGLIRNRRLIVEERMLRPSDWAFDTQSGGSGGASKAIVKSCSGK-----------GGSKANDGKQDAAVADGGKANYKDQRARFKKMSAAPKRIAKLQVIIEEKEQKVEEYGKKMYHAGSDVAKVIEFSERKEALAVEVEALYAEWDELEAMLAE 748
MV R+ +AL L L +SV+AF+ C P + H+ L+ A+ TR A T PTPNYGDTQGAEL+LDG+AVAAGAT LVSGV+WKINKGERVGIVGGNGAGKST+LSVIAG+N+PEEG++ VHPRATLGYLVQTAVSGS R L EEAMSQMTAFH A+ AVA AEAR DPSD+NLL+LERAQA W+EAGGEDV +RV NIL+GLGFQR+DY RPCTDFSGGWQMRIALARLLLGEPSLLLLDEPTNHLDSAAK+WLMHFL+ YTGTVLLVSHEEELLRAFQCTTVAELRFQALELYRCGYDQFL QR+ERAEALEAAAARQAKERARVQ FIDRFGAKATMASAANSRK LEKM+IIE P AA KRPHLRFP PPKVMPEL+KL+NASFGYPPA PLV++VDFTLTRGTRMVLLGPNGCGKSTVLKALTG+LP L SS+RILGEGLEMGVFTQDLAQDLPQ+ +A+DYVL+TVRQKD+S++DQQARGALGALGL GEKAMRPISALSGGEKARVALSVFALLPHNLLVLDEPSNHLD+ T ETLSEALAE+RGT+VVISHNKAFVE+LKVTHVGLI+NRRL+VEERMLRPSDW+FD Q G AS + G+ G + NDG + + K Y++QRARFK++SAAPKRIAKLQ IIE+KE+K EEYGKKMYHAG DVAKV+E +ERKEALA EVE+LYAEWDELEA+LAE
Sbjct: 1 MVNRIHRLALLLSLAATTSVHAFMRVSCDPEQAWRISHISLADSKASTQTR--------AVTTNVPTPNYGDTQGAELFLDGIAVAAGATQLVSGVNWKINKGERVGIVGGNGAGKSTVLSVIAGHNLPEEGSIRVHPRATLGYLVQTAVSGSARPLIEEAMSQMTAFHAAQKAVAEAEARVTRDPSDANLLSLERAQAEWIEAGGEDVERRVGNILNGLGFQRSDYPRPCTDFSGGWQMRIALARLLLGEPSLLLLDEPTNHLDSAAKEWLMHFLSGYTGTVLLVSHEEELLRAFQCTTVAELRFQALELYRCGYDQFLAQREERAEALEAAAARQAKERARVQAFIDRFGAKATMASAANSRKKTLEKMAIIEAPLAAGKRPHLRFPPPPKVMPELVKLQNASFGYPPAQPLVKEVDFTLTRGTRMVLLGPNGCGKSTVLKALTGSLPALNGASSERILGEGLEMGVFTQDLAQDLPQEHIALDYVLSTVRQKDLSVSDQQARGALGALGLTGEKAMRPISALSGGEKARVALSVFALLPHNLLVLDEPSNHLDVATMETLSEALAEYRGTLVVISHNKAFVERLKVTHVGLIKNRRLVVEERMLRPSDWSFDAQGGSDARASPVVSTRAKGEESSTKSSRSTTSGREKNDG-----IPEKPKITYQEQRARFKRISAAPKRIAKLQQIIEDKEKKAEEYGKKMYHAGCDVAKVMELNERKEALASEVESLYAEWDELEALLAE 733
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02100.1 ID=NO12G02100.1|Name=NO12G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp CTTTCTGCACAAAGCTGCATTTAAACCTGCTGGCTTTGTCCCTCGACTTC CTCCCACCCGCAAGTGAACACGACACACGCCCCGCCGATTAATGCATCAT TCTCATACTGCCTCCGGCTACACTCACATCCAGAGCGCAGCCATGGTCAA GAGGATGTCGATAGCTCTTGCCTTGCTGCTGCTGCAAGCCAGCTCTGTCA ATGCATTTCTCTGCCTCCCCCTTCCCGGCGCCCAGCAGCGCCACGTACTA TCCCAGCTCACGGCCGCGATTGCAACCCGAACGGGTAAGTCAAATAAGGC GGCAGCAGCTGTCACCTACACGCCCACGCCCAACTATGGCGATACTCAAG GTGCCGAACTGTATTTGGATGGCGTCGCGGTTGCCGCGGGCGCCACATCC TTGGTAAGCGGTGTTTCCTGGAAGATCAACAAGGGGGAGCGCGTTGGTAT CGTGGGTGGGAACGGCGCGGGCAAGTCGACGATGCTCAGTGTCATTGCCG GGTACAACATGCCGGAGGAGGGGACAGTTACAGTGCACCCGCGGGCTACG CTGGGTTACCTGGTGCAGACGGCCGTCTCTGGCTCCACACGGACGCTGAA AGAGGAGGCCATGTCACAAATGACGGCTTTTCATGACGCCGAGGCCGCAG TGGCTCGGGCTGAGGCCCGGGCGAATGTTGACCCCAGTGATTCCAATCTC CTAGCCTTAGAAAGGGCCCAGGCTTTATGGGTTGAGGCTGGAGGGGAGGA TGTGACACAACGCGTCGAAAACATTTTGAGTGGGTTGGGATTTCAGCGCA CGGACTACACGCGGCCTTGCACGGACTTCAGCGGCGGATGGCAGATGCGC ATTGCCCTGGCCCGGCTGTTGCTAGGGGAACCTTCACTTTTGCTCCTGGA TGAGCCCACGAACCATTTGGACTCGGCCGCCAAGGACTGGCTAATGCACT TCTTGACTTCTTACACGGGCACCGTGCTCCTGGTCAGCCACGAAGAGGAG CTTCTGCGGGCATTTCAATGCACGACGGTGGCCGAGCTCCGCTTCCAGGC CTTGGAGTTGTACCGCTGTGGATACGATCAATTTCTGGAGCAGCGGAAGG AGCGTGCCGAGGCCCTCGAGGCTGCGGCCGCCCGGCAGGCGAAAGAGCGG GCACGTGTCCAGGGGTTTATCGACCGGTTTGGGGCGAAAGCGACCATGGC ATCGGCCGCTAACTCGAGGAAGTTGAAATTGGAGAAGATGAGCATCATTG AGGGCCCCCAGGCTGCTGTCAAGCGGCCTCATCTCCGTTTCCCCGTCCCG CCCAAGGTGATGCCCGAGCTTCTGAAATTGCGGAATGCCAGCTTTGGGTA CCCGCCCGCCGCGCCTTTGGTGGAGAAAGTGGATTTCACGCTCACCCGGG GCACGCGCATGGTTTTGCTGGGGCCGAACGGCTGCGGCAAGTCCACGGTT CTTAAAGCCTTGACGGGCACCTTGCCTCCTCTGGAGACTGGAAGCAGTGA CAGGATCCTGGGGGAGGGTCTGGAGATGGGCGTTTTTACCCAAGATCTGG CGCAGGACTTGCCTCAAGATCAGGTCGCGGTGGACTATGTCTTGGCCACG GTGAGGCAGAAGGACATGAGCATCACGGACCAGCAGGCCCGGGGGGCGTT GGGTGCCTTGGGACTGATGGGGGAGAAGGCGATGCGGCCCATCTCGGCGC TGTCTGGCGGGGAGAAAGCCCGCGTGGCTCTAAGTGTGTTTGCCCTTCTC CCACACAATCTATTGGTGTTGGACGAACCCAGTAACCACTTAGATATTGG CACAACCGAGACGCTGAGTGAGGCTCTTGCTGAATTCAGAGGTACAATGG TGGTCATAAGCCACAACAAGGCCTTCGTGGAGAAGCTCAAGGTTACCCAC GTCGGGCTGATCAGAAACCGGCGTCTCATTGTGGAGGAGCGCATGCTCCG CCCCAGTGACTGGGCATTCGATACACAGTCTGGAGGCAGCGGGGGGGCTT CCAAGGCTATTGTGAAGAGTTGTAGTGGCAAGGGCGGCAGCAAAGCCAAT GATGGCAAGCAAGATGCAGCTGTTGCAGACGGTGGGAAGGCGAATTATAA GGACCAACGGGCGCGCTTTAAGAAGATGTCAGCCGCGCCCAAGCGCATTG CGAAGCTGCAGGTGATTATCGAGGAGAAGGAGCAGAAGGTGGAGGAGTAT GGGAAAAAAATGTACCACGCGGGTAGCGACGTTGCCAAGGTTATTGAATT TTCTGAGCGAAAGGAAGCATTGGCCGTTGAAGTAGAGGCACTCTACGCCG AGTGGGACGAGCTGGAGGCCATGCTCGCGGAAAAGAATGGGCAATAAAGC ACCGAGAAAGGAAAGGGGGGGTAGGGGGCATGCTGGCAGAAAAGAATGGG CAATCAAGCACCGAGAGGGGAAATAGAAATTGTCGCCCGAAGAGGGTAGG AAATGCAGACAAAGTGTAAGAAAGTGGCAGGCATCGCAATGAATGGAATG TAAATGTAATGGTTTGATTTGAGAAACCGCAGAGTATGCACCTGGAAAAA AAATAACCAAATTTTGTCGTG back to topprotein sequence of NO12G02100.1 >NO12G02100.1-protein ID=NO12G02100.1-protein|Name=NO12G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=752bp MHHSHTASGYTHIQSAAMVKRMSIALALLLLQASSVNAFLCLPLPGAQQR HVLSQLTAAIATRTGKSNKAAAAVTYTPTPNYGDTQGAELYLDGVAVAAG ATSLVSGVSWKINKGERVGIVGGNGAGKSTMLSVIAGYNMPEEGTVTVHP RATLGYLVQTAVSGSTRTLKEEAMSQMTAFHDAEAAVARAEARANVDPSD SNLLALERAQALWVEAGGEDVTQRVENILSGLGFQRTDYTRPCTDFSGGW QMRIALARLLLGEPSLLLLDEPTNHLDSAAKDWLMHFLTSYTGTVLLVSH EEELLRAFQCTTVAELRFQALELYRCGYDQFLEQRKERAEALEAAAARQA KERARVQGFIDRFGAKATMASAANSRKLKLEKMSIIEGPQAAVKRPHLRF PVPPKVMPELLKLRNASFGYPPAAPLVEKVDFTLTRGTRMVLLGPNGCGK STVLKALTGTLPPLETGSSDRILGEGLEMGVFTQDLAQDLPQDQVAVDYV LATVRQKDMSITDQQARGALGALGLMGEKAMRPISALSGGEKARVALSVF ALLPHNLLVLDEPSNHLDIGTTETLSEALAEFRGTMVVISHNKAFVEKLK VTHVGLIRNRRLIVEERMLRPSDWAFDTQSGGSGGASKAIVKSCSGKGGS KANDGKQDAAVADGGKANYKDQRARFKKMSAAPKRIAKLQVIIEEKEQKV EEYGKKMYHAGSDVAKVIEFSERKEALAVEVEALYAEWDELEAMLAEKNG Q* back to topmRNA from alignment at chr12:593120..595690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02100.1 ID=NO12G02100.1|Name=NO12G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp|location=Sequence derived from alignment at chr12:593120..595690- (Nannochloropsis oceanica) CTTTCTGCACAAAGCTGCATTTAAACCTGCTGGCTTTGTCCCTCGACTTC
CTCCCACCCGCAAGTGAACACGACACACGCCCCGCCGATTAATGCATCAT
TCTCATACTGCCTCCGGCTACACTCACATCCAGAGCGCAGCCATGGTCAA
GAGGATGTCGATAGCTCTTGCCTTGCTGCTGCTGCAAGCCAGCTCTGTCA
ATGCATTTCTCTGCCTCCCCCTTCCCGGCGCCCAGCAGCGCCACGTACTA
TCCCAGCTCACGGCCGCGATTGCAACCCGAACGGGTAAGTCAAATAAGGC
GGCAGCAGCTGTCACCTACACGCCCACGCCCAACTATGGCGATACTCAAG
GTGCCGAACTGTATTTGGATGGCGTCGCGGTTGCCGCGGGCGCCACATCC
TTGGTAAGCGGTGTTTCCTGGAAGATCAACAAGGGGGAGCGCGTTGGTAT
CGTGGGTGGGAACGGCGCGGGCAAGTCGACGATGCTCAGTGTCATTGCCG
GGTACAACATGCCGGAGGAGGGGACAGTTACAGTGCACCCGCGGGCTACG
CTGGGTTACCTGGTGCAGACGGCCGTCTCTGGCTCCACACGGACGCTGAA
AGAGGAGGCCATGTCACAAATGACGGCTTTTCATGACGCCGAGGCCGCAG
TGGCTCGGGCTGAGGCCCGGGCGAATGTTGACCCCAGTGATTCCAATCTC
CTAGCCTTAGAAAGGGCCCAGGCTTTATGGGTTGAGGCTGGAGGGGAGGA
TGTGACACAACGCGTCGAAAACATTTTGAGTGGGTTGGGATTTCAGCGCA
CGGACTACACGCGGCCTTGCACGGACTTCAGCGGCGGATGGCAGATGCGC
ATTGCCCTGGCCCGGCTGTTGCTAGGGGAACCTTCACTTTTGCTCCTGGA
TGAGCCCACGAACCATTTGGACTCGGCCGCCAAGGACTGGCTAATGCACT
TCTTGACTTCTTACACGGGCACCGTGCTCCTGGTCAGCCACGAAGAGGAG
CTTCTGCGGGCATTTCAATGCACGACGGTGGCCGAGCTCCGCTTCCAGGC
CTTGGAGTTGTACCGCTGTGGATACGATCAATTTCTGGAGCAGCGGAAGG
AGCGTGCCGAGGCCCTCGAGGCTGCGGCCGCCCGGCAGGCGAAAGAGCGG
GCACGTGTCCAGGGGTTTATCGACCGGTTTGGGGCGAAAGCGACCATGGC
ATCGGCCGCTAACTCGAGGAAGTTGAAATTGGAGAAGATGAGCATCATTG
AGGGCCCCCAGGCTGCTGTCAAGCGGCCTCATCTCCGTTTCCCCGTCCCG
CCCAAGGTGATGCCCGAGCTTCTGAAATTGCGGAATGCCAGCTTTGGGTA
CCCGCCCGCCGCGCCTTTGGTGGAGAAAGTGGATTTCACGCTCACCCGGG
GCACGCGCATGGTTTTGCTGGGGCCGAACGGCTGCGGCAAGTCCACGGTT
CTTAAAGCCTTGACGGGCACCTTGCCTCCTCTGGAGACTGGAAGCAGTGA
CAGGATCCTGGGGGAGGGTCTGGAGATGGGCGTTTTTACCCAAGATCTGG
CGCAGGACTTGCCTCAAGATCAGGTCGCGGTGGACTATGTCTTGGCCACG
GTGAGGCAGAAGGACATGAGCATCACGGACCAGCAGGCCCGGGGGGCGTT
GGGTGCCTTGGGACTGATGGGGGAGAAGGCGATGCGGCCCATCTCGGCGC
TGTCTGGCGGGGAGAAAGCCCGCGTGGCTCTAAGTGTGTTTGCCCTTCTC
CCACACAATCTATTGGTGTTGGACGAACCCAGTAACCACTTAGATATTGG
CACAACCGAGACGCTGAGTGAGGCTCTTGCTGAATTCAGAGGTACAATGG
TGGTCATAAGCCACAACAAGGCCTTCGTGGAGAAGCTCAAGGTTACCCAC
GTCGGGCTGATCAGAAACCGGCGTCTCATTGTGGAGGAGCGCATGCTCCG
CCCCAGTGACTGGGCATTCGATACACAGTCTGGAGGCAGCGGGGGGGCTT
CCAAGGCTATTGTGAAGAGTTGTAGTGGCAAGGGCGGCAGCAAAGCCAAT
GATGGCAAGCAAGATGCAGCTGTTGCAGACGGTGGGAAGGCGAATTATAA
GGACCAACGGGCGCGCTTTAAGAAGATGTCAGCCGCGCCCAAGCGCATTG
CGAAGCTGCAGGTGATTATCGAGGAGAAGGAGCAGAAGGTGGAGGAGTAT
GGGAAAAAAATGTACCACGCGGGTAGCGACGTTGCCAAGGTTATTGAATT
TTCTGAGCGAAAGGAAGCATTGGCCGTTGAAGTAGAGGCACTCTACGCCG
AGTGGGACGAGCTGGAGGCCATGCTCGCGGAAAAGAATGGGCAATAAAGC
ACCGAGAAAGGAAAGGGGGGGTAGGGGGCATGCTGGCAGAAAAGAATGGG
CAATCAAGCACCGAGAGGGGAAATAGAAATTGTCGCCCGAAGAGGGTAGG
AAATGCAGACAAAGTGTAAGAAAGTGGCAGGCATCGCAATGAATGGAATG
TAAATGTAATGGTTTGATTTGAGAAACCGCAGAGTATGCACCTGGAAAAA
AAATAACCAAATTTTGTCGTG back to topCoding sequence (CDS) from alignment at chr12:593120..595690- >NO12G02100.1 ID=NO12G02100.1|Name=NO12G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at chr12:593120..595690- (Nannochloropsis oceanica) ATGCATCATTCTCATACTGCCTCCGGCTACACTCACATCCAGAGCGCAGC CATGGTCAAGAGGATGTCGATAGCTCTTGCCTTGCTGCTGCTGCAAGCCA GCTCTGTCAATGCATTTCTCTGCCTCCCCCTTCCCGGCGCCCAGCAGCGC CACGTACTATCCCAGCTCACGGCCGCGATTGCAACCCGAACGGGTAAGTC AAATAAGGCGGCAGCAGCTGTCACCTACACGCCCACGCCCAACTATGGCG ATACTCAAGGTGCCGAACTGTATTTGGATGGCGTCGCGGTTGCCGCGGGC GCCACATCCTTGGTAAGCGGTGTTTCCTGGAAGATCAACAAGGGGGAGCG CGTTGGTATCGTGGGTGGGAACGGCGCGGGCAAGTCGACGATGCTCAGTG TCATTGCCGGGTACAACATGCCGGAGGAGGGGACAGTTACAGTGCACCCG CGGGCTACGCTGGGTTACCTGGTGCAGACGGCCGTCTCTGGCTCCACACG GACGCTGAAAGAGGAGGCCATGTCACAAATGACGGCTTTTCATGACGCCG AGGCCGCAGTGGCTCGGGCTGAGGCCCGGGCGAATGTTGACCCCAGTGAT TCCAATCTCCTAGCCTTAGAAAGGGCCCAGGCTTTATGGGTTGAGGCTGG AGGGGAGGATGTGACACAACGCGTCGAAAACATTTTGAGTGGGTTGGGAT TTCAGCGCACGGACTACACGCGGCCTTGCACGGACTTCAGCGGCGGATGG CAGATGCGCATTGCCCTGGCCCGGCTGTTGCTAGGGGAACCTTCACTTTT GCTCCTGGATGAGCCCACGAACCATTTGGACTCGGCCGCCAAGGACTGGC TAATGCACTTCTTGACTTCTTACACGGGCACCGTGCTCCTGGTCAGCCAC GAAGAGGAGCTTCTGCGGGCATTTCAATGCACGACGGTGGCCGAGCTCCG CTTCCAGGCCTTGGAGTTGTACCGCTGTGGATACGATCAATTTCTGGAGC AGCGGAAGGAGCGTGCCGAGGCCCTCGAGGCTGCGGCCGCCCGGCAGGCG AAAGAGCGGGCACGTGTCCAGGGGTTTATCGACCGGTTTGGGGCGAAAGC GACCATGGCATCGGCCGCTAACTCGAGGAAGTTGAAATTGGAGAAGATGA GCATCATTGAGGGCCCCCAGGCTGCTGTCAAGCGGCCTCATCTCCGTTTC CCCGTCCCGCCCAAGGTGATGCCCGAGCTTCTGAAATTGCGGAATGCCAG CTTTGGGTACCCGCCCGCCGCGCCTTTGGTGGAGAAAGTGGATTTCACGC TCACCCGGGGCACGCGCATGGTTTTGCTGGGGCCGAACGGCTGCGGCAAG TCCACGGTTCTTAAAGCCTTGACGGGCACCTTGCCTCCTCTGGAGACTGG AAGCAGTGACAGGATCCTGGGGGAGGGTCTGGAGATGGGCGTTTTTACCC AAGATCTGGCGCAGGACTTGCCTCAAGATCAGGTCGCGGTGGACTATGTC TTGGCCACGGTGAGGCAGAAGGACATGAGCATCACGGACCAGCAGGCCCG GGGGGCGTTGGGTGCCTTGGGACTGATGGGGGAGAAGGCGATGCGGCCCA TCTCGGCGCTGTCTGGCGGGGAGAAAGCCCGCGTGGCTCTAAGTGTGTTT GCCCTTCTCCCACACAATCTATTGGTGTTGGACGAACCCAGTAACCACTT AGATATTGGCACAACCGAGACGCTGAGTGAGGCTCTTGCTGAATTCAGAG GTACAATGGTGGTCATAAGCCACAACAAGGCCTTCGTGGAGAAGCTCAAG GTTACCCACGTCGGGCTGATCAGAAACCGGCGTCTCATTGTGGAGGAGCG CATGCTCCGCCCCAGTGACTGGGCATTCGATACACAGTCTGGAGGCAGCG GGGGGGCTTCCAAGGCTATTGTGAAGAGTTGTAGTGGCAAGGGCGGCAGC AAAGCCAATGATGGCAAGCAAGATGCAGCTGTTGCAGACGGTGGGAAGGC GAATTATAAGGACCAACGGGCGCGCTTTAAGAAGATGTCAGCCGCGCCCA AGCGCATTGCGAAGCTGCAGGTGATTATCGAGGAGAAGGAGCAGAAGGTG GAGGAGTATGGGAAAAAAATGTACCACGCGGGTAGCGACGTTGCCAAGGT TATTGAATTTTCTGAGCGAAAGGAAGCATTGGCCGTTGAAGTAGAGGCAC TCTACGCCGAGTGGGACGAGCTGGAGGCCATGCTCGCGGAAAAGAATGGG CAATAA back to top
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