NO12G02090.1, NO12G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02090.1
Unique NameNO12G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr12:590417..591848 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:590417..591848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02090.1 vs.
Match: EWM25823.1 (pre-mrna splicing factor prp38 [Nannochloropsis gaditana])

HSP 1 Score: 370.2 bits (949), Expect = 9.300e-99
Identity = 255/431 (59.16%), Postives = 284/431 (65.89%), Query Frame = 0 
Query:    1 MANRTDPTVTTVHGTNPQFLVEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLSAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEYIEELLTGDYCCDVALPHLPKRHLLEDQKLLTPRVSALEDEDLDPPEDGNEGWKEKEDEEMRKARNGKSSRPRGGDEEEQEEDKDEQGREKWFKD-----SHLHRRGNRFASPSS-------RHERWRDRR--GRDEVEEDSMENR-------------------RRRNRSRTASRTPKRRRRRSMSQDRRRRNQSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSFSSSSSSSSFSPTNPSPSRKDSSDSEYERK-TKKIKSKKVRVIKGLKLHKI 398
            MANRTDPTVTTVHGTNPQFL+EKILRQKIYNSLYWKEHCFGLTAETLVDKAVGL AYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDE+IEELLT DYCCDVALPHLPKRHLLEDQKLL PR+SAL+DEDLD  E  NE   ++ ++E      G +   RGGD   + +   E G    F++          R +   SPSS         +RW +R+   R+E  E + E R                    RRNRS++ SR+PKRRRRRS S  + R    P      SS  S      S SSS  SS+SS+                           K  S SE  RK ++K+KS K  VIKGLKLHK+
Sbjct:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLDTFEKDNETVDKQSEDE------GNTQNGRGGDRCAESQGGGEHGPRSGFREEVDTRGQARHRRDISDSPSSDCRLRRRSLDRWEERKKIRREEDHEGTDEARHRRERGGGESSAGGRRGSYHRRNRSKSRSRSPKRRRRRSFSSSQSRSGSPPRARHLGSSGRSRRRHGRSRSSSGYSSASSAG--------------------------KGHSASERRRKRSRKVKSNKGLVIKGLKLHKL 399
The following BLAST results are available for this feature:
BLAST of NO12G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25823.19.300e-9959.16pre-mrna splicing factor prp38 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02090NO12G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02090.1NO12G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02090.1.cds1NO12G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02090.1.cds2NO12G02090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02090.1 ID=NO12G02090.1|Name=NO12G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGTACGAACCC
ACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAACAGCCTTT
ATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTGTAGACAAG
GCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATGCAGAAGCC
CACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGA
AGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGTACTTGCGC
GTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTA
CCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCGATTTCGGG
GCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAGAGGAGCTG
CTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCG
GCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGG
AGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGGGTGGAAGGAG
AAGGAGGATGAGGAGATGCGGAAAGCACGGAATGGTAAGAGCAGTCGACC
CCGGGGTGGCGATGAGGAGGAGCAGGAGGAGGATAAAGACGAGCAAGGGC
GGGAGAAATGGTTCAAGGATAGCCATCTGCACCGTCGAGGCAACCGCTTC
GCCTCGCCTTCCTCGCGTCATGAACGATGGCGGGACAGGCGGGGGAGGGA
CGAGGTGGAGGAGGATAGCATGGAAAATCGCCGCCGTCGAAACCGAAGTC
GGACTGCCAGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCCAA
GACCGCCGCCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCGTCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCTCCTCT
TCCTCCTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCTCGAAA
AGACAGCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAAGAGCA
AGAAGGTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGGGGGGT
CACCGGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGTGGAGTT
CAGGGAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAGGACGAA
GTTGGGTCTTAAGCCTTTGCGAGACATTTGCCGAGGAGACATAA
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protein sequence of NO12G02090.1

>NO12G02090.1-protein ID=NO12G02090.1-protein|Name=NO12G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MANRTDPTVTTVHGTNPQFLVEKILRQKIYNSLYWKEHCFGLTAETLVDK
AVGLSAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLR
VLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEYIEEL
LTGDYCCDVALPHLPKRHLLEDQKLLTPRVSALEDEDLDPPEDGNEGWKE
KEDEEMRKARNGKSSRPRGGDEEEQEEDKDEQGREKWFKDSHLHRRGNRF
ASPSSRHERWRDRRGRDEVEEDSMENRRRRNRSRTASRTPKRRRRRSMSQ
DRRRRNQSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSFSS
SSSSSSFSPTNPSPSRKDSSDSEYERKTKKIKSKKVRVIKGLKLHKIVGG
HRRRRRQRLPRGAVVEFREEGKHPWENGMILGRSWVLSLCETFAEET*
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mRNA from alignment at chr12:590417..591848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02090.1 ID=NO12G02090.1|Name=NO12G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at chr12:590417..591848- (Nannochloropsis oceanica)
ATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGTACGAACCC
ACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAACAGCCTTT
ATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTGTAGACAAG
GCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATGCAGAAGCC
CACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGA
AGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGTACTTGCGC
GTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTA
CCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCGATTTCGGG
GCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAGAGGAGCTG
CTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCG
GCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGG
AGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGGGTGGAAGGAG
AAGGAGGATGAGGAGATGCGGAAAGCACGGAATGGTAAGAGCAGTCGACC
CCGGGGTGGCGATGAGGAGGAGCAGGAGGAGGATAAAGACGAGCAAGGGC
GGGAGAAATGGTTCAAGGATAGCCATCTGCACCGTCGAGGCAACCGCTTC
GCCTCGCCTTCCTCGCGTCATGAACGATGGCGGGACAGGCGGGGGAGGGA
CGAGGTGGAGGAGGATAGCATGGAAAATCGCCGCCGTCGAAACCGAAGTC
GGACTGCCAGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCCAA
GACCGCCGCCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCGTCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCTCCTCT
TCCTCCTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCTCGAAA
AGACAGCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAAGAGCA
AGAAGGTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGGGGGGT
CACCGGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGTGGAGTT
CAGGGAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAGGACGAA
GTTGGGTCTTAAGCCTTTGCGAGAGTAAGACCAGAAGAAGTCAAAGCAAA
GGAGAAAGGAAAACATGCACTGAAGGTTGCCGAGGCGATGTCTTTGCCAC
CTCGACTTTCAGCATTTGCCGAGGAGACATAA
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Coding sequence (CDS) from alignment at chr12:590417..591848-

>NO12G02090.1 ID=NO12G02090.1|Name=NO12G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr12:590417..591848- (Nannochloropsis oceanica)
ATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGTACGAACCC
ACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAACAGCCTTT
ATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTGTAGACAAG
GCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATGCAGAAGCC
CACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGA
AGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGTACTTGCGC
GTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTA
CCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCGATTTCGGG
GCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAGAGGAGCTG
CTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCG
GCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGG
AGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGGGTGGAAGGAG
AAGGAGGATGAGGAGATGCGGAAAGCACGGAATGGTAAGAGCAGTCGACC
CCGGGGTGGCGATGAGGAGGAGCAGGAGGAGGATAAAGACGAGCAAGGGC
GGGAGAAATGGTTCAAGGATAGCCATCTGCACCGTCGAGGCAACCGCTTC
GCCTCGCCTTCCTCGCGTCATGAACGATGGCGGGACAGGCGGGGGAGGGA
CGAGGTGGAGGAGGATAGCATGGAAAATCGCCGCCGTCGAAACCGAAGTC
GGACTGCCAGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCCAA
GACCGCCGCCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCGTCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCTCCTCT
TCCTCCTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCTCGAAA
AGACAGCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAAGAGCA
AGAAGGTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGGGGGGT
CACCGGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGTGGAGTT
CAGGGAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAGGACGAA
GTTGGGTCTTAAGCCTTTGCGAGACATTTGCCGAGGAGACATAA
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Synonyms
Publications