NO12G02050.1, NO12G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02050.1
Unique NameNO12G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2209
Alignment locationchr12:578753..580961 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:578753..580961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02050.1 vs.
Match: EWM25800.1 (acyl- synthetase family member mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 699.1 bits (1803), Expect = 1.100e-197
Identity = 359/569 (63.09%), Postives = 444/569 (78.03%), Query Frame = 0 
Query:    3 KKLSMPSLQLFRQLVKHGHRTAIVTSQTGYSLTYREILREATRVSAILEQTA-GLPSSSPTSSSLRPVALLAPRDHSFCVGHIAVLHAGAAVVPIHSHNSPAETEYILRDAGCRQILLHPQLRSAVETVLYSAKGLDIEIVELKVSESHAIDADTLPSYAIAQGKKHMEASRSASQDLEWFKMSESTDAMIVYTSGSTGRPKGVVKTHAQLAEMCRAVAEAWAYTPTDRVLEFLPLHHLHGLLNKFLAVLWAGGAVELLGSPAAAAIWRRLADQTKPPLTMFHAVPTIYSLMLEELESGRLDGASQANALKHLREMRLMVSGSAALPQSRFFEWEVLTGHRLLERYGTTEAGMILGNSLTPMSARFPGHVGAPFPGVEVRLVDPDTGADVTRKPGKQGEVRVRSPKGLFSRYLNQPEATCQAFDDDNWYKTGDMGEFDTEKGFKILGRLSTDILKSGGYKLSALEIEAAIGQHERVAEVCIVGKPHPLWGDEVVAVVRLKKGEGEGEEDSSSSNSLNSE---LTMEDLRTFLAGRLAPYKMPRVLHVVKSLPKNAMGKVNKKTLLKDLG 568
            K+L +PSLQ+FRQLV HG + A  +S+ G++LTY EIL+E+  ++A L +T    PS+SP  S+ RP+ALLAP+DH+FC+G + VL AG AVVPI+S +   E E+IL+D+GC Q+LLHP+ RS +  +L  +KGLDIE+V+L +  +   D + + +  + + K  M      S+ +EW + SE+ DA++VYTSG+TGRPKGVVKTHAQLAEMC+ V +AW Y PTDRVLEFLPLHHLHGLLNK LAVLWAGG VE LGS  A AIW RLAD TKP L+MFHAVPTIY+LMLEELESGR+D ASQ  AL+HLR+MRL+VSGSAALPQ RF +WE LTGHR+LERYGTTEAGMIL N LTP+S+RFPGHVGAPFPGV+VRLVDP+T ADVTR+PGKQGEVRVRS  GLFSRY N+ E T +AFD+DNWYKTGD+G++D EKGFKI+GRLS DIL SGGYK+SALEIEAAI +HE+VAEV ++G+ H  WGDEVVAVVR+K  E      + S N L      LT E L  FLA RLA + +PR +++V  +PKNAMGKV+K+ LL+ LG
Sbjct:    2 KQLPLPSLQIFRQLVDHGPKIATTSSKGGFNLTYSEILQESALIAARLGRTVISSPSTSP--STFRPIALLAPQDHTFCLGFMGVLQAGGAVVPIYSRSPQREIEFILQDSGCAQVLLHPEFRSNLTPLLRGSKGLDIEVVDL-IPGTDQSDLEKIAAMRMGKDKAAM-LGHQYSEIVEWIESSENADAVVVYTSGTTGRPKGVVKTHAQLAEMCKGVVKAWNYAPTDRVLEFLPLHHLHGLLNKCLAVLWAGGVVEFLGSANANAIWDRLADPTKPMLSMFHAVPTIYALMLEELESGRMDEASQKRALQHLRQMRLIVSGSAALPQCRFLKWEALTGHRILERYGTTEAGMILSNPLTPVSSRFPGHVGAPFPGVDVRLVDPETEADVTREPGKQGEVRVRSEHGLFSRYHNRSEVTRKAFDEDNWYKTGDLGKYDPEKGFKIVGRLSADILNSGGYKISALEIEAAIQEHEQVAEVVVLGRCHSKWGDEVVAVVRIK--ETAMRSANVSGNPLEKRTGLLTTEGLHDFLASRLASHMLPRTMYIVNLIPKNAMGKVDKRVLLEQLG 564
The following BLAST results are available for this feature:
BLAST of NO12G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25800.11.100e-19763.09acyl- synthetase family member mitochondrial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02050NO12G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02050.1NO12G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02050.1.cds1NO12G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02050.1 ID=NO12G02050.1|Name=NO12G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2209bp
CCCCCTTATCAGCAAGGGAAGTGTACGGACGTTTCGAAAATGAGAGAATT
GTCATGCGCAGCGTGAAAGCTGTATGAGTGCCAGCCCTTTTATGGTTCAT
GCGGATATGCGAATGTGAGGATATAACTCAGTTGCTCACTCGTAACACAA
CACACTCTCACAAAGCACAGGCATGGAAAAGAAACTCTCTATGCCCTCCC
TGCAACTCTTTAGGCAGCTCGTCAAGCATGGGCATCGCACCGCTATCGTG
ACATCTCAAACCGGCTACAGCCTGACGTACCGTGAGATACTGCGGGAGGC
CACCCGAGTCTCAGCCATTTTGGAACAAACAGCAGGTCTACCGTCATCAT
CACCCACTTCGTCATCCCTACGCCCTGTCGCTCTTCTAGCCCCACGGGAC
CACAGCTTTTGCGTCGGCCACATAGCCGTGTTACATGCTGGTGCCGCAGT
CGTACCGATACATTCGCACAATTCGCCGGCCGAGACGGAATACATTTTGC
GAGATGCCGGCTGTCGACAGATTTTGCTCCATCCCCAGCTCCGGTCCGCT
GTCGAAACTGTGCTTTATAGCGCCAAGGGCCTTGACATAGAGATCGTGGA
GCTGAAAGTGAGCGAGAGCCATGCGATAGATGCCGACACTCTTCCTTCGT
ACGCAATAGCTCAAGGGAAGAAGCACATGGAGGCATCAAGATCAGCCTCC
CAGGACCTGGAATGGTTTAAAATGTCAGAATCTACCGACGCGATGATTGT
TTATACCAGCGGAAGCACGGGCCGCCCAAAGGGAGTGGTCAAGACGCACG
CGCAGCTTGCGGAGATGTGCCGCGCTGTCGCGGAGGCATGGGCTTATACG
CCAACGGACCGCGTCCTGGAATTTTTGCCCTTGCATCACCTTCACGGGTT
GCTTAACAAATTCTTGGCAGTCCTGTGGGCGGGTGGAGCTGTCGAGCTCC
TGGGTTCCCCCGCGGCCGCCGCTATTTGGCGGCGACTCGCGGATCAAACC
AAACCGCCGCTCACCATGTTTCATGCAGTGCCCACCATATATTCACTCAT
GCTGGAAGAGCTAGAGTCCGGCCGCCTGGATGGAGCTTCGCAGGCAAACG
CGCTAAAACATCTGCGCGAAATGCGCCTCATGGTTAGCGGATCGGCTGCT
CTACCTCAATCCAGATTTTTCGAGTGGGAAGTACTGACTGGCCACCGCCT
TTTGGAAAGGTACGGAACCACGGAGGCTGGTATGATTCTTGGCAACTCCC
TGACACCAATGTCCGCGCGGTTTCCTGGGCATGTGGGGGCTCCGTTTCCG
GGTGTCGAAGTTCGGTTGGTGGACCCCGACACGGGTGCGGATGTGACGCG
GAAGCCCGGAAAACAGGGGGAGGTGCGTGTGCGATCACCAAAAGGCCTAT
TTAGTCGTTACCTTAATCAACCGGAGGCCACGTGCCAGGCCTTCGACGAC
GACAATTGGTATAAGACGGGAGATATGGGAGAGTTTGACACTGAGAAAGG
TTTCAAAATCCTTGGGCGCCTGTCTACCGATATCCTCAAATCCGGAGGAT
ATAAGCTAAGTGCTTTGGAAATTGAAGCCGCCATCGGGCAACACGAACGT
GTTGCCGAAGTGTGTATTGTGGGGAAGCCACATCCCCTGTGGGGGGATGA
GGTGGTGGCCGTCGTTCGGTTAAAAAAGGGAGAGGGTGAGGGAGAAGAGG
ACAGCAGCAGCAGCAATAGCCTGAACTCGGAGTTGACCATGGAAGATCTC
CGGACGTTCTTAGCCGGCCGTTTGGCACCCTACAAAATGCCACGGGTACT
ACATGTTGTCAAATCACTCCCCAAAAATGCCATGGGTAAGGTCAACAAAA
AGACGTTGTTGAAGGATCTGGGCATCATAGACGAGGTTTAAATGTGAATA
GTGCCAAAAATAAAAAAAGGTTGACGATCATTATGGGAAGAACTTGAGAT
GACACATTTCACTCGCCAGATATTTTTCTCAGGTGTTTGGTATCGCGACG
ACGTTAGAAGAAAAAAATAAAAGAAACGTAAGGGGAAAATGAAGGAAGAA
AGAATACCCGGCGGCAAGGATGTTCAGGAGGCTGGAAAGCTATACGACAA
CAGTGAGCCCGAAAAGCAAAGCAATATCGTTAAACGCAAGAGACATGACG
TCTGCTCAGTGAAATACGCTTGACCCGTGCATTCGATTGACAGCTTTGGC
AAAAACTTT
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protein sequence of NO12G02050.1

>NO12G02050.1-protein ID=NO12G02050.1-protein|Name=NO12G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MEKKLSMPSLQLFRQLVKHGHRTAIVTSQTGYSLTYREILREATRVSAIL
EQTAGLPSSSPTSSSLRPVALLAPRDHSFCVGHIAVLHAGAAVVPIHSHN
SPAETEYILRDAGCRQILLHPQLRSAVETVLYSAKGLDIEIVELKVSESH
AIDADTLPSYAIAQGKKHMEASRSASQDLEWFKMSESTDAMIVYTSGSTG
RPKGVVKTHAQLAEMCRAVAEAWAYTPTDRVLEFLPLHHLHGLLNKFLAV
LWAGGAVELLGSPAAAAIWRRLADQTKPPLTMFHAVPTIYSLMLEELESG
RLDGASQANALKHLREMRLMVSGSAALPQSRFFEWEVLTGHRLLERYGTT
EAGMILGNSLTPMSARFPGHVGAPFPGVEVRLVDPDTGADVTRKPGKQGE
VRVRSPKGLFSRYLNQPEATCQAFDDDNWYKTGDMGEFDTEKGFKILGRL
STDILKSGGYKLSALEIEAAIGQHERVAEVCIVGKPHPLWGDEVVAVVRL
KKGEGEGEEDSSSSNSLNSELTMEDLRTFLAGRLAPYKMPRVLHVVKSLP
KNAMGKVNKKTLLKDLGIIDEV*
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mRNA from alignment at chr12:578753..580961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02050.1 ID=NO12G02050.1|Name=NO12G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2209bp|location=Sequence derived from alignment at chr12:578753..580961- (Nannochloropsis oceanica)
CCCCCTTATCAGCAAGGGAAGTGTACGGACGTTTCGAAAATGAGAGAATT
GTCATGCGCAGCGTGAAAGCTGTATGAGTGCCAGCCCTTTTATGGTTCAT
GCGGATATGCGAATGTGAGGATATAACTCAGTTGCTCACTCGTAACACAA
CACACTCTCACAAAGCACAGGCATGGAAAAGAAACTCTCTATGCCCTCCC
TGCAACTCTTTAGGCAGCTCGTCAAGCATGGGCATCGCACCGCTATCGTG
ACATCTCAAACCGGCTACAGCCTGACGTACCGTGAGATACTGCGGGAGGC
CACCCGAGTCTCAGCCATTTTGGAACAAACAGCAGGTCTACCGTCATCAT
CACCCACTTCGTCATCCCTACGCCCTGTCGCTCTTCTAGCCCCACGGGAC
CACAGCTTTTGCGTCGGCCACATAGCCGTGTTACATGCTGGTGCCGCAGT
CGTACCGATACATTCGCACAATTCGCCGGCCGAGACGGAATACATTTTGC
GAGATGCCGGCTGTCGACAGATTTTGCTCCATCCCCAGCTCCGGTCCGCT
GTCGAAACTGTGCTTTATAGCGCCAAGGGCCTTGACATAGAGATCGTGGA
GCTGAAAGTGAGCGAGAGCCATGCGATAGATGCCGACACTCTTCCTTCGT
ACGCAATAGCTCAAGGGAAGAAGCACATGGAGGCATCAAGATCAGCCTCC
CAGGACCTGGAATGGTTTAAAATGTCAGAATCTACCGACGCGATGATTGT
TTATACCAGCGGAAGCACGGGCCGCCCAAAGGGAGTGGTCAAGACGCACG
CGCAGCTTGCGGAGATGTGCCGCGCTGTCGCGGAGGCATGGGCTTATACG
CCAACGGACCGCGTCCTGGAATTTTTGCCCTTGCATCACCTTCACGGGTT
GCTTAACAAATTCTTGGCAGTCCTGTGGGCGGGTGGAGCTGTCGAGCTCC
TGGGTTCCCCCGCGGCCGCCGCTATTTGGCGGCGACTCGCGGATCAAACC
AAACCGCCGCTCACCATGTTTCATGCAGTGCCCACCATATATTCACTCAT
GCTGGAAGAGCTAGAGTCCGGCCGCCTGGATGGAGCTTCGCAGGCAAACG
CGCTAAAACATCTGCGCGAAATGCGCCTCATGGTTAGCGGATCGGCTGCT
CTACCTCAATCCAGATTTTTCGAGTGGGAAGTACTGACTGGCCACCGCCT
TTTGGAAAGGTACGGAACCACGGAGGCTGGTATGATTCTTGGCAACTCCC
TGACACCAATGTCCGCGCGGTTTCCTGGGCATGTGGGGGCTCCGTTTCCG
GGTGTCGAAGTTCGGTTGGTGGACCCCGACACGGGTGCGGATGTGACGCG
GAAGCCCGGAAAACAGGGGGAGGTGCGTGTGCGATCACCAAAAGGCCTAT
TTAGTCGTTACCTTAATCAACCGGAGGCCACGTGCCAGGCCTTCGACGAC
GACAATTGGTATAAGACGGGAGATATGGGAGAGTTTGACACTGAGAAAGG
TTTCAAAATCCTTGGGCGCCTGTCTACCGATATCCTCAAATCCGGAGGAT
ATAAGCTAAGTGCTTTGGAAATTGAAGCCGCCATCGGGCAACACGAACGT
GTTGCCGAAGTGTGTATTGTGGGGAAGCCACATCCCCTGTGGGGGGATGA
GGTGGTGGCCGTCGTTCGGTTAAAAAAGGGAGAGGGTGAGGGAGAAGAGG
ACAGCAGCAGCAGCAATAGCCTGAACTCGGAGTTGACCATGGAAGATCTC
CGGACGTTCTTAGCCGGCCGTTTGGCACCCTACAAAATGCCACGGGTACT
ACATGTTGTCAAATCACTCCCCAAAAATGCCATGGGTAAGGTCAACAAAA
AGACGTTGTTGAAGGATCTGGGCATCATAGACGAGGTTTAAATGTGAATA
GTGCCAAAAATAAAAAAAGGTTGACGATCATTATGGGAAGAACTTGAGAT
GACACATTTCACTCGCCAGATATTTTTCTCAGGTGTTTGGTATCGCGACG
ACGTTAGAAGAAAAAAATAAAAGAAACGTAAGGGGAAAATGAAGGAAGAA
AGAATACCCGGCGGCAAGGATGTTCAGGAGGCTGGAAAGCTATACGACAA
CAGTGAGCCCGAAAAGCAAAGCAATATCGTTAAACGCAAGAGACATGACG
TCTGCTCAGTGAAATACGCTTGACCCGTGCATTCGATTGACAGCTTTGGC
AAAAACTTT
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Coding sequence (CDS) from alignment at chr12:578753..580961-

>NO12G02050.1 ID=NO12G02050.1|Name=NO12G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr12:578753..580961- (Nannochloropsis oceanica)
ATGGAAAAGAAACTCTCTATGCCCTCCCTGCAACTCTTTAGGCAGCTCGT
CAAGCATGGGCATCGCACCGCTATCGTGACATCTCAAACCGGCTACAGCC
TGACGTACCGTGAGATACTGCGGGAGGCCACCCGAGTCTCAGCCATTTTG
GAACAAACAGCAGGTCTACCGTCATCATCACCCACTTCGTCATCCCTACG
CCCTGTCGCTCTTCTAGCCCCACGGGACCACAGCTTTTGCGTCGGCCACA
TAGCCGTGTTACATGCTGGTGCCGCAGTCGTACCGATACATTCGCACAAT
TCGCCGGCCGAGACGGAATACATTTTGCGAGATGCCGGCTGTCGACAGAT
TTTGCTCCATCCCCAGCTCCGGTCCGCTGTCGAAACTGTGCTTTATAGCG
CCAAGGGCCTTGACATAGAGATCGTGGAGCTGAAAGTGAGCGAGAGCCAT
GCGATAGATGCCGACACTCTTCCTTCGTACGCAATAGCTCAAGGGAAGAA
GCACATGGAGGCATCAAGATCAGCCTCCCAGGACCTGGAATGGTTTAAAA
TGTCAGAATCTACCGACGCGATGATTGTTTATACCAGCGGAAGCACGGGC
CGCCCAAAGGGAGTGGTCAAGACGCACGCGCAGCTTGCGGAGATGTGCCG
CGCTGTCGCGGAGGCATGGGCTTATACGCCAACGGACCGCGTCCTGGAAT
TTTTGCCCTTGCATCACCTTCACGGGTTGCTTAACAAATTCTTGGCAGTC
CTGTGGGCGGGTGGAGCTGTCGAGCTCCTGGGTTCCCCCGCGGCCGCCGC
TATTTGGCGGCGACTCGCGGATCAAACCAAACCGCCGCTCACCATGTTTC
ATGCAGTGCCCACCATATATTCACTCATGCTGGAAGAGCTAGAGTCCGGC
CGCCTGGATGGAGCTTCGCAGGCAAACGCGCTAAAACATCTGCGCGAAAT
GCGCCTCATGGTTAGCGGATCGGCTGCTCTACCTCAATCCAGATTTTTCG
AGTGGGAAGTACTGACTGGCCACCGCCTTTTGGAAAGGTACGGAACCACG
GAGGCTGGTATGATTCTTGGCAACTCCCTGACACCAATGTCCGCGCGGTT
TCCTGGGCATGTGGGGGCTCCGTTTCCGGGTGTCGAAGTTCGGTTGGTGG
ACCCCGACACGGGTGCGGATGTGACGCGGAAGCCCGGAAAACAGGGGGAG
GTGCGTGTGCGATCACCAAAAGGCCTATTTAGTCGTTACCTTAATCAACC
GGAGGCCACGTGCCAGGCCTTCGACGACGACAATTGGTATAAGACGGGAG
ATATGGGAGAGTTTGACACTGAGAAAGGTTTCAAAATCCTTGGGCGCCTG
TCTACCGATATCCTCAAATCCGGAGGATATAAGCTAAGTGCTTTGGAAAT
TGAAGCCGCCATCGGGCAACACGAACGTGTTGCCGAAGTGTGTATTGTGG
GGAAGCCACATCCCCTGTGGGGGGATGAGGTGGTGGCCGTCGTTCGGTTA
AAAAAGGGAGAGGGTGAGGGAGAAGAGGACAGCAGCAGCAGCAATAGCCT
GAACTCGGAGTTGACCATGGAAGATCTCCGGACGTTCTTAGCCGGCCGTT
TGGCACCCTACAAAATGCCACGGGTACTACATGTTGTCAAATCACTCCCC
AAAAATGCCATGGGTAAGGTCAACAAAAAGACGTTGTTGAAGGATCTGGG
CATCATAGACGAGGTTTAA
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Synonyms
Publications